Experiment: McCas_formate_complete Irgasan 0.0125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00650 and MMJJ_RS00655 are separated by 8 nucleotides MMJJ_RS00655 and MMJJ_RS00660 are separated by 147 nucleotides MMJJ_RS00660 and MMJJ_RS00665 are separated by 0 nucleotides
MMJJ_RS00650: MMJJ_RS00650 - cation:proton antiporter, at 126,335 to 127,501
_RS00650
MMJJ_RS00655: MMJJ_RS00655 - CBS domain-containing protein, at 127,510 to 127,986
_RS00655
MMJJ_RS00660: MMJJ_RS00660 - putative beta-lysine N-acetyltransferase, at 128,134 to 128,958
_RS00660
MMJJ_RS00665: MMJJ_RS00665 - lysine 2,3-aminomutase, at 128,959 to 130,260
_RS00665
Position (kb) 128
129 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 127.141 kb on - strand, within MMJJ_RS00650 at 127.155 kb on - strand, within MMJJ_RS00650 at 127.155 kb on - strand, within MMJJ_RS00650 at 127.156 kb on + strand, within MMJJ_RS00650 at 127.169 kb on + strand, within MMJJ_RS00650 at 127.215 kb on + strand, within MMJJ_RS00650 at 127.215 kb on + strand, within MMJJ_RS00650 at 127.247 kb on - strand, within MMJJ_RS00650 at 127.248 kb on + strand, within MMJJ_RS00650 at 127.248 kb on + strand, within MMJJ_RS00650 at 127.248 kb on + strand, within MMJJ_RS00650 at 127.248 kb on + strand, within MMJJ_RS00650 at 127.254 kb on + strand, within MMJJ_RS00650 at 127.406 kb on - strand at 127.433 kb on - strand at 127.434 kb on + strand at 127.459 kb on - strand at 127.478 kb on + strand at 127.533 kb on - strand at 127.534 kb on + strand at 127.534 kb on + strand at 127.534 kb on + strand at 127.594 kb on - strand, within MMJJ_RS00655 at 127.681 kb on - strand, within MMJJ_RS00655 at 127.789 kb on - strand, within MMJJ_RS00655 at 127.789 kb on - strand, within MMJJ_RS00655 at 127.789 kb on - strand, within MMJJ_RS00655 at 127.802 kb on + strand, within MMJJ_RS00655 at 127.860 kb on - strand, within MMJJ_RS00655 at 127.860 kb on - strand, within MMJJ_RS00655 at 127.861 kb on + strand, within MMJJ_RS00655 at 127.864 kb on - strand, within MMJJ_RS00655 at 127.864 kb on - strand, within MMJJ_RS00655 at 127.864 kb on - strand, within MMJJ_RS00655 at 127.896 kb on - strand, within MMJJ_RS00655 at 127.896 kb on - strand, within MMJJ_RS00655 at 127.900 kb on - strand, within MMJJ_RS00655 at 127.900 kb on - strand, within MMJJ_RS00655 at 127.900 kb on - strand, within MMJJ_RS00655 at 127.901 kb on + strand, within MMJJ_RS00655 at 127.914 kb on - strand, within MMJJ_RS00655 at 127.915 kb on + strand, within MMJJ_RS00655 at 127.955 kb on - strand at 128.001 kb on - strand at 128.008 kb on + strand at 128.011 kb on + strand at 128.012 kb on - strand at 128.012 kb on - strand at 128.012 kb on - strand at 128.012 kb on - strand at 128.013 kb on + strand at 128.018 kb on + strand at 128.032 kb on - strand at 128.032 kb on - strand at 128.037 kb on + strand at 128.069 kb on + strand at 128.070 kb on - strand at 128.070 kb on - strand at 128.070 kb on - strand at 128.070 kb on - strand at 128.070 kb on - strand at 128.071 kb on + strand at 128.071 kb on + strand at 128.071 kb on + strand at 128.071 kb on + strand at 128.120 kb on + strand at 128.135 kb on - strand at 128.136 kb on + strand at 128.184 kb on - strand at 128.191 kb on + strand at 128.213 kb on - strand at 128.217 kb on - strand, within MMJJ_RS00660 at 128.217 kb on - strand, within MMJJ_RS00660 at 128.218 kb on + strand, within MMJJ_RS00660 at 128.253 kb on + strand, within MMJJ_RS00660 at 128.259 kb on - strand, within MMJJ_RS00660 at 128.277 kb on + strand, within MMJJ_RS00660 at 128.317 kb on - strand, within MMJJ_RS00660 at 128.317 kb on - strand, within MMJJ_RS00660 at 128.319 kb on - strand, within MMJJ_RS00660 at 128.319 kb on - strand, within MMJJ_RS00660 at 128.319 kb on - strand, within MMJJ_RS00660 at 128.320 kb on + strand, within MMJJ_RS00660 at 128.321 kb on - strand, within MMJJ_RS00660 at 128.321 kb on - strand, within MMJJ_RS00660 at 128.322 kb on + strand, within MMJJ_RS00660 at 128.322 kb on + strand, within MMJJ_RS00660 at 128.322 kb on + strand, within MMJJ_RS00660 at 128.322 kb on + strand, within MMJJ_RS00660 at 128.322 kb on + strand, within MMJJ_RS00660 at 128.323 kb on - strand, within MMJJ_RS00660 at 128.324 kb on + strand, within MMJJ_RS00660 at 128.324 kb on + strand, within MMJJ_RS00660 at 128.324 kb on + strand, within MMJJ_RS00660 at 128.326 kb on - strand, within MMJJ_RS00660 at 128.327 kb on + strand, within MMJJ_RS00660 at 128.331 kb on + strand, within MMJJ_RS00660 at 128.394 kb on - strand, within MMJJ_RS00660 at 128.395 kb on + strand, within MMJJ_RS00660 at 128.395 kb on + strand, within MMJJ_RS00660 at 128.400 kb on - strand, within MMJJ_RS00660 at 128.442 kb on - strand, within MMJJ_RS00660 at 128.452 kb on - strand, within MMJJ_RS00660 at 128.454 kb on - strand, within MMJJ_RS00660 at 128.459 kb on - strand, within MMJJ_RS00660 at 128.486 kb on + strand, within MMJJ_RS00660 at 128.488 kb on - strand, within MMJJ_RS00660 at 128.489 kb on + strand, within MMJJ_RS00660 at 128.490 kb on - strand, within MMJJ_RS00660 at 128.492 kb on - strand, within MMJJ_RS00660 at 128.493 kb on + strand, within MMJJ_RS00660 at 128.527 kb on + strand, within MMJJ_RS00660 at 128.621 kb on + strand, within MMJJ_RS00660 at 128.621 kb on + strand, within MMJJ_RS00660 at 128.639 kb on - strand at 128.710 kb on + strand, within MMJJ_RS00660 at 128.714 kb on - strand, within MMJJ_RS00660 at 128.714 kb on - strand, within MMJJ_RS00660 at 128.715 kb on + strand, within MMJJ_RS00660 at 128.715 kb on + strand, within MMJJ_RS00660 at 128.735 kb on - strand, within MMJJ_RS00660 at 128.760 kb on - strand, within MMJJ_RS00660 at 128.761 kb on + strand, within MMJJ_RS00660 at 128.761 kb on + strand, within MMJJ_RS00660 at 128.839 kb on - strand, within MMJJ_RS00660 at 128.839 kb on - strand, within MMJJ_RS00660 at 128.856 kb on - strand, within MMJJ_RS00660 at 128.894 kb on - strand at 128.939 kb on + strand at 128.960 kb on - strand at 129.019 kb on - strand at 129.019 kb on - strand at 129.019 kb on - strand at 129.073 kb on + strand at 129.091 kb on + strand, within MMJJ_RS00665 at 129.134 kb on - strand, within MMJJ_RS00665 at 129.134 kb on - strand, within MMJJ_RS00665 at 129.135 kb on + strand, within MMJJ_RS00665 at 129.135 kb on + strand, within MMJJ_RS00665 at 129.145 kb on + strand, within MMJJ_RS00665 at 129.198 kb on + strand, within MMJJ_RS00665 at 129.241 kb on - strand, within MMJJ_RS00665 at 129.241 kb on - strand, within MMJJ_RS00665 at 129.248 kb on - strand, within MMJJ_RS00665 at 129.249 kb on + strand, within MMJJ_RS00665 at 129.273 kb on - strand, within MMJJ_RS00665 at 129.273 kb on - strand, within MMJJ_RS00665 at 129.273 kb on - strand, within MMJJ_RS00665 at 129.324 kb on - strand, within MMJJ_RS00665 at 129.347 kb on + strand, within MMJJ_RS00665 at 129.365 kb on - strand, within MMJJ_RS00665 at 129.365 kb on - strand, within MMJJ_RS00665 at 129.365 kb on - strand, within MMJJ_RS00665 at 129.366 kb on + strand, within MMJJ_RS00665 at 129.366 kb on + strand, within MMJJ_RS00665 at 129.366 kb on + strand, within MMJJ_RS00665 at 129.369 kb on + strand, within MMJJ_RS00665 at 129.376 kb on - strand, within MMJJ_RS00665 at 129.377 kb on + strand, within MMJJ_RS00665 at 129.419 kb on - strand, within MMJJ_RS00665 at 129.419 kb on - strand, within MMJJ_RS00665 at 129.420 kb on + strand, within MMJJ_RS00665 at 129.420 kb on + strand, within MMJJ_RS00665 at 129.448 kb on - strand, within MMJJ_RS00665 at 129.504 kb on - strand, within MMJJ_RS00665 at 129.537 kb on + strand, within MMJJ_RS00665 at 129.543 kb on - strand, within MMJJ_RS00665 at 129.544 kb on + strand, within MMJJ_RS00665 at 129.547 kb on - strand, within MMJJ_RS00665 at 129.583 kb on - strand, within MMJJ_RS00665 at 129.637 kb on - strand, within MMJJ_RS00665 at 129.656 kb on + strand, within MMJJ_RS00665 at 129.656 kb on + strand, within MMJJ_RS00665 at 129.656 kb on + strand, within MMJJ_RS00665 at 129.664 kb on - strand, within MMJJ_RS00665 at 129.739 kb on - strand, within MMJJ_RS00665 at 129.740 kb on + strand, within MMJJ_RS00665 at 129.846 kb on + strand, within MMJJ_RS00665 at 129.846 kb on + strand, within MMJJ_RS00665 at 129.865 kb on - strand, within MMJJ_RS00665 at 129.865 kb on - strand, within MMJJ_RS00665 at 129.866 kb on + strand, within MMJJ_RS00665 at 129.867 kb on - strand, within MMJJ_RS00665 at 129.870 kb on + strand, within MMJJ_RS00665
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Irgasan 0.0125 mM remove 127,141 - MMJJ_RS00650 0.69 -1.4 127,155 - MMJJ_RS00650 0.70 +1.5 127,155 - MMJJ_RS00650 0.70 +1.1 127,156 + MMJJ_RS00650 0.70 +1.2 127,169 + MMJJ_RS00650 0.71 +0.6 127,215 + MMJJ_RS00650 0.75 +0.6 127,215 + MMJJ_RS00650 0.75 -2.4 127,247 - MMJJ_RS00650 0.78 +0.9 127,248 + MMJJ_RS00650 0.78 -1.4 127,248 + MMJJ_RS00650 0.78 +1.9 127,248 + MMJJ_RS00650 0.78 +0.8 127,248 + MMJJ_RS00650 0.78 -3.7 127,254 + MMJJ_RS00650 0.79 -1.1 127,406 - -0.3 127,433 - +1.2 127,434 + -1.7 127,459 - +1.4 127,478 + -0.1 127,533 - +3.4 127,534 + -0.2 127,534 + +0.4 127,534 + -3.7 127,594 - MMJJ_RS00655 0.18 +2.0 127,681 - MMJJ_RS00655 0.36 -3.5 127,789 - MMJJ_RS00655 0.58 +1.9 127,789 - MMJJ_RS00655 0.58 +1.0 127,789 - MMJJ_RS00655 0.58 -3.0 127,802 + MMJJ_RS00655 0.61 +1.3 127,860 - MMJJ_RS00655 0.73 -2.1 127,860 - MMJJ_RS00655 0.73 +1.3 127,861 + MMJJ_RS00655 0.74 -0.4 127,864 - MMJJ_RS00655 0.74 +2.0 127,864 - MMJJ_RS00655 0.74 +1.0 127,864 - MMJJ_RS00655 0.74 -2.2 127,896 - MMJJ_RS00655 0.81 +4.5 127,896 - MMJJ_RS00655 0.81 -2.1 127,900 - MMJJ_RS00655 0.82 +0.3 127,900 - MMJJ_RS00655 0.82 +2.7 127,900 - MMJJ_RS00655 0.82 -2.6 127,901 + MMJJ_RS00655 0.82 -2.9 127,914 - MMJJ_RS00655 0.85 -2.2 127,915 + MMJJ_RS00655 0.85 -3.2 127,955 - -2.0 128,001 - -1.1 128,008 + -1.7 128,011 + -0.6 128,012 - -1.9 128,012 - -0.9 128,012 - -2.5 128,012 - +2.3 128,013 + +4.0 128,018 + +1.1 128,032 - +0.7 128,032 - -2.8 128,037 + -2.1 128,069 + +0.6 128,070 - -1.5 128,070 - +0.9 128,070 - -1.8 128,070 - +2.5 128,070 - -1.5 128,071 + +1.1 128,071 + +2.3 128,071 + -0.7 128,071 + +0.3 128,120 + -3.5 128,135 - +4.5 128,136 + +2.8 128,184 - +1.6 128,191 + +3.2 128,213 - -2.8 128,217 - MMJJ_RS00660 0.10 +2.8 128,217 - MMJJ_RS00660 0.10 -1.1 128,218 + MMJJ_RS00660 0.10 +0.0 128,253 + MMJJ_RS00660 0.14 +1.4 128,259 - MMJJ_RS00660 0.15 -1.1 128,277 + MMJJ_RS00660 0.17 -1.7 128,317 - MMJJ_RS00660 0.22 +2.6 128,317 - MMJJ_RS00660 0.22 -1.1 128,319 - MMJJ_RS00660 0.22 -2.7 128,319 - MMJJ_RS00660 0.22 -1.8 128,319 - MMJJ_RS00660 0.22 -2.5 128,320 + MMJJ_RS00660 0.23 -0.7 128,321 - MMJJ_RS00660 0.23 +1.2 128,321 - MMJJ_RS00660 0.23 -0.7 128,322 + MMJJ_RS00660 0.23 +1.1 128,322 + MMJJ_RS00660 0.23 -1.1 128,322 + MMJJ_RS00660 0.23 +0.7 128,322 + MMJJ_RS00660 0.23 +1.4 128,322 + MMJJ_RS00660 0.23 +1.1 128,323 - MMJJ_RS00660 0.23 +2.4 128,324 + MMJJ_RS00660 0.23 -3.0 128,324 + MMJJ_RS00660 0.23 +2.6 128,324 + MMJJ_RS00660 0.23 +2.4 128,326 - MMJJ_RS00660 0.23 +2.4 128,327 + MMJJ_RS00660 0.23 -1.6 128,331 + MMJJ_RS00660 0.24 -2.4 128,394 - MMJJ_RS00660 0.32 +4.0 128,395 + MMJJ_RS00660 0.32 +4.0 128,395 + MMJJ_RS00660 0.32 -3.0 128,400 - MMJJ_RS00660 0.32 -1.2 128,442 - MMJJ_RS00660 0.37 +1.1 128,452 - MMJJ_RS00660 0.39 +3.5 128,454 - MMJJ_RS00660 0.39 +1.9 128,459 - MMJJ_RS00660 0.39 +0.9 128,486 + MMJJ_RS00660 0.43 -0.3 128,488 - MMJJ_RS00660 0.43 -1.4 128,489 + MMJJ_RS00660 0.43 -2.1 128,490 - MMJJ_RS00660 0.43 +2.6 128,492 - MMJJ_RS00660 0.43 -1.4 128,493 + MMJJ_RS00660 0.44 -1.7 128,527 + MMJJ_RS00660 0.48 +1.2 128,621 + MMJJ_RS00660 0.59 +3.0 128,621 + MMJJ_RS00660 0.59 +0.2 128,639 - +0.9 128,710 + MMJJ_RS00660 0.70 -1.5 128,714 - MMJJ_RS00660 0.70 -0.7 128,714 - MMJJ_RS00660 0.70 -1.1 128,715 + MMJJ_RS00660 0.70 +0.2 128,715 + MMJJ_RS00660 0.70 +4.6 128,735 - MMJJ_RS00660 0.73 -3.2 128,760 - MMJJ_RS00660 0.76 -0.7 128,761 + MMJJ_RS00660 0.76 +1.3 128,761 + MMJJ_RS00660 0.76 +3.9 128,839 - MMJJ_RS00660 0.85 +1.5 128,839 - MMJJ_RS00660 0.85 +1.4 128,856 - MMJJ_RS00660 0.88 -1.0 128,894 - +2.3 128,939 + +1.3 128,960 - +1.2 129,019 - -1.9 129,019 - +1.7 129,019 - +3.8 129,073 + +1.9 129,091 + MMJJ_RS00665 0.10 +3.5 129,134 - MMJJ_RS00665 0.13 +2.8 129,134 - MMJJ_RS00665 0.13 +1.0 129,135 + MMJJ_RS00665 0.14 -2.9 129,135 + MMJJ_RS00665 0.14 +3.5 129,145 + MMJJ_RS00665 0.14 -3.4 129,198 + MMJJ_RS00665 0.18 +4.0 129,241 - MMJJ_RS00665 0.22 -0.6 129,241 - MMJJ_RS00665 0.22 +3.3 129,248 - MMJJ_RS00665 0.22 +0.8 129,249 + MMJJ_RS00665 0.22 +0.1 129,273 - MMJJ_RS00665 0.24 +3.8 129,273 - MMJJ_RS00665 0.24 -0.2 129,273 - MMJJ_RS00665 0.24 +0.8 129,324 - MMJJ_RS00665 0.28 +4.2 129,347 + MMJJ_RS00665 0.30 +0.3 129,365 - MMJJ_RS00665 0.31 +2.8 129,365 - MMJJ_RS00665 0.31 +3.8 129,365 - MMJJ_RS00665 0.31 -1.4 129,366 + MMJJ_RS00665 0.31 +2.7 129,366 + MMJJ_RS00665 0.31 +1.9 129,366 + MMJJ_RS00665 0.31 +1.1 129,369 + MMJJ_RS00665 0.31 +3.6 129,376 - MMJJ_RS00665 0.32 +3.2 129,377 + MMJJ_RS00665 0.32 +1.5 129,419 - MMJJ_RS00665 0.35 +3.6 129,419 - MMJJ_RS00665 0.35 +1.4 129,420 + MMJJ_RS00665 0.35 -2.8 129,420 + MMJJ_RS00665 0.35 +0.1 129,448 - MMJJ_RS00665 0.38 +4.3 129,504 - MMJJ_RS00665 0.42 +1.9 129,537 + MMJJ_RS00665 0.44 +2.9 129,543 - MMJJ_RS00665 0.45 -2.2 129,544 + MMJJ_RS00665 0.45 -1.1 129,547 - MMJJ_RS00665 0.45 +3.0 129,583 - MMJJ_RS00665 0.48 +3.3 129,637 - MMJJ_RS00665 0.52 +4.5 129,656 + MMJJ_RS00665 0.54 +1.8 129,656 + MMJJ_RS00665 0.54 -2.1 129,656 + MMJJ_RS00665 0.54 +5.5 129,664 - MMJJ_RS00665 0.54 -1.1 129,739 - MMJJ_RS00665 0.60 +3.0 129,740 + MMJJ_RS00665 0.60 -1.9 129,846 + MMJJ_RS00665 0.68 +3.1 129,846 + MMJJ_RS00665 0.68 -0.7 129,865 - MMJJ_RS00665 0.70 +3.3 129,865 - MMJJ_RS00665 0.70 -1.0 129,866 + MMJJ_RS00665 0.70 +3.2 129,867 - MMJJ_RS00665 0.70 -2.3 129,870 + MMJJ_RS00665 0.70 -1.1
Or see this region's nucleotide sequence