Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19700 and IAI47_19705 are separated by 609 nucleotides IAI47_19705 and IAI47_19710 are separated by 185 nucleotides IAI47_19710 and IAI47_19715 overlap by 4 nucleotides
IAI47_19700: IAI47_19700 - EAL domain-containing protein, at 167,656 to 168,828
_19700
IAI47_19705: IAI47_19705 - D-2-hydroxyacid dehydrogenase family protein, at 169,438 to 170,409
_19705
IAI47_19710: IAI47_19710 - helix-turn-helix transcriptional regulator, at 170,595 to 170,912
_19710
IAI47_19715: IAI47_19715 - rhodanese family protein, at 170,909 to 171,436
_19715
Position (kb) 169
170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 168.451 kb on + strand, within IAI47_19700 at 168.452 kb on - strand, within IAI47_19700 at 168.639 kb on + strand, within IAI47_19700 at 168.639 kb on + strand, within IAI47_19700 at 168.742 kb on - strand at 168.774 kb on + strand at 168.774 kb on + strand at 168.774 kb on + strand at 168.775 kb on - strand at 168.777 kb on + strand at 168.778 kb on - strand at 168.785 kb on - strand at 168.785 kb on - strand at 168.840 kb on - strand at 168.870 kb on + strand at 168.873 kb on - strand at 168.874 kb on + strand at 168.882 kb on - strand at 168.882 kb on - strand at 168.933 kb on + strand at 168.959 kb on + strand at 168.959 kb on + strand at 168.968 kb on + strand at 168.968 kb on + strand at 168.969 kb on - strand at 168.977 kb on + strand at 168.977 kb on + strand at 168.978 kb on - strand at 169.013 kb on + strand at 169.039 kb on - strand at 169.040 kb on + strand at 169.040 kb on + strand at 169.041 kb on - strand at 169.041 kb on - strand at 169.052 kb on + strand at 169.052 kb on + strand at 169.053 kb on - strand at 169.053 kb on - strand at 169.053 kb on - strand at 169.079 kb on + strand at 169.086 kb on + strand at 169.103 kb on + strand at 169.104 kb on - strand at 169.104 kb on - strand at 169.104 kb on - strand at 169.116 kb on + strand at 169.116 kb on + strand at 169.116 kb on + strand at 169.116 kb on + strand at 169.117 kb on - strand at 169.117 kb on - strand at 169.141 kb on + strand at 169.141 kb on + strand at 169.141 kb on + strand at 169.141 kb on + strand at 169.141 kb on + strand at 169.141 kb on + strand at 169.142 kb on - strand at 169.142 kb on - strand at 169.150 kb on + strand at 169.194 kb on + strand at 169.195 kb on - strand at 169.195 kb on - strand at 169.264 kb on + strand at 169.316 kb on - strand at 169.324 kb on + strand at 169.324 kb on + strand at 169.324 kb on + strand at 169.325 kb on - strand at 169.325 kb on - strand at 169.325 kb on - strand at 169.331 kb on + strand at 169.332 kb on - strand at 169.332 kb on - strand at 169.332 kb on - strand at 169.336 kb on - strand at 169.336 kb on - strand at 169.336 kb on - strand at 169.346 kb on + strand at 169.370 kb on + strand at 169.373 kb on + strand at 169.374 kb on - strand at 169.374 kb on - strand at 169.380 kb on + strand at 169.380 kb on + strand at 169.380 kb on + strand at 169.381 kb on - strand at 169.381 kb on - strand at 169.386 kb on + strand at 169.387 kb on - strand at 169.449 kb on + strand at 169.449 kb on + strand at 169.450 kb on - strand at 169.450 kb on - strand at 169.450 kb on - strand at 169.450 kb on - strand at 169.450 kb on - strand at 169.450 kb on - strand at 169.451 kb on + strand at 169.452 kb on - strand at 169.452 kb on - strand at 169.468 kb on + strand at 169.516 kb on + strand at 169.516 kb on + strand at 169.516 kb on + strand at 169.517 kb on - strand at 169.517 kb on - strand at 169.517 kb on - strand at 169.517 kb on - strand at 169.517 kb on - strand at 169.517 kb on - strand at 169.517 kb on - strand at 169.592 kb on + strand, within IAI47_19705 at 169.593 kb on - strand, within IAI47_19705 at 169.593 kb on - strand, within IAI47_19705 at 169.655 kb on + strand, within IAI47_19705 at 169.655 kb on + strand, within IAI47_19705 at 169.672 kb on - strand, within IAI47_19705 at 169.704 kb on + strand, within IAI47_19705 at 169.704 kb on + strand, within IAI47_19705 at 169.705 kb on - strand, within IAI47_19705 at 169.705 kb on - strand, within IAI47_19705 at 169.727 kb on + strand, within IAI47_19705 at 169.728 kb on - strand, within IAI47_19705 at 169.728 kb on - strand, within IAI47_19705 at 169.728 kb on - strand, within IAI47_19705 at 169.764 kb on - strand, within IAI47_19705 at 169.764 kb on - strand, within IAI47_19705 at 169.764 kb on - strand, within IAI47_19705 at 169.799 kb on + strand, within IAI47_19705 at 169.799 kb on + strand, within IAI47_19705 at 169.799 kb on + strand, within IAI47_19705 at 169.799 kb on + strand, within IAI47_19705 at 169.847 kb on + strand, within IAI47_19705 at 169.848 kb on - strand, within IAI47_19705 at 169.848 kb on - strand, within IAI47_19705 at 169.848 kb on - strand, within IAI47_19705 at 169.864 kb on - strand, within IAI47_19705 at 169.864 kb on - strand, within IAI47_19705 at 169.899 kb on - strand, within IAI47_19705 at 169.949 kb on + strand, within IAI47_19705 at 169.949 kb on + strand, within IAI47_19705 at 169.950 kb on - strand, within IAI47_19705 at 169.984 kb on - strand, within IAI47_19705 at 170.048 kb on + strand, within IAI47_19705 at 170.048 kb on + strand, within IAI47_19705 at 170.048 kb on + strand, within IAI47_19705 at 170.048 kb on + strand, within IAI47_19705 at 170.049 kb on - strand, within IAI47_19705 at 170.049 kb on - strand, within IAI47_19705 at 170.079 kb on + strand, within IAI47_19705 at 170.079 kb on + strand, within IAI47_19705 at 170.079 kb on + strand, within IAI47_19705 at 170.080 kb on - strand, within IAI47_19705 at 170.080 kb on - strand, within IAI47_19705 at 170.080 kb on - strand, within IAI47_19705 at 170.082 kb on + strand, within IAI47_19705 at 170.082 kb on + strand, within IAI47_19705 at 170.082 kb on + strand, within IAI47_19705 at 170.123 kb on + strand, within IAI47_19705 at 170.133 kb on + strand, within IAI47_19705 at 170.134 kb on - strand, within IAI47_19705 at 170.171 kb on + strand, within IAI47_19705 at 170.172 kb on - strand, within IAI47_19705 at 170.172 kb on - strand, within IAI47_19705 at 170.219 kb on - strand, within IAI47_19705 at 170.237 kb on - strand, within IAI47_19705 at 170.237 kb on - strand, within IAI47_19705 at 170.237 kb on - strand, within IAI47_19705 at 170.254 kb on + strand, within IAI47_19705 at 170.254 kb on + strand, within IAI47_19705 at 170.254 kb on + strand, within IAI47_19705 at 170.254 kb on + strand, within IAI47_19705 at 170.254 kb on + strand, within IAI47_19705 at 170.254 kb on + strand, within IAI47_19705 at 170.255 kb on - strand, within IAI47_19705 at 170.296 kb on + strand, within IAI47_19705 at 170.296 kb on + strand, within IAI47_19705 at 170.314 kb on + strand at 170.315 kb on - strand at 170.315 kb on - strand at 170.315 kb on - strand at 170.315 kb on - strand at 170.323 kb on + strand at 170.324 kb on - strand at 170.343 kb on + strand at 170.344 kb on - strand at 170.344 kb on - strand at 170.344 kb on - strand at 170.351 kb on + strand at 170.352 kb on - strand at 170.352 kb on - strand at 170.357 kb on - strand at 170.361 kb on + strand at 170.361 kb on + strand at 170.361 kb on + strand at 170.370 kb on + strand at 170.370 kb on + strand at 170.370 kb on + strand at 170.371 kb on - strand at 170.371 kb on - strand at 170.371 kb on - strand at 170.385 kb on + strand at 170.385 kb on + strand at 170.386 kb on - strand at 170.407 kb on + strand at 170.491 kb on + strand at 170.491 kb on + strand at 170.528 kb on - strand at 170.666 kb on + strand, within IAI47_19710 at 170.666 kb on + strand, within IAI47_19710 at 170.683 kb on + strand, within IAI47_19710 at 170.683 kb on + strand, within IAI47_19710 at 170.699 kb on + strand, within IAI47_19710 at 170.835 kb on + strand, within IAI47_19710 at 170.878 kb on + strand, within IAI47_19710 at 170.885 kb on + strand at 170.885 kb on + strand at 170.885 kb on + strand at 170.889 kb on + strand at 170.890 kb on - strand at 170.890 kb on - strand at 170.890 kb on - strand at 170.890 kb on - strand at 170.890 kb on - strand at 170.890 kb on - strand at 170.977 kb on + strand, within IAI47_19715 at 170.996 kb on + strand, within IAI47_19715 at 170.996 kb on + strand, within IAI47_19715 at 170.996 kb on + strand, within IAI47_19715 at 170.997 kb on - strand, within IAI47_19715 at 171.055 kb on + strand, within IAI47_19715 at 171.056 kb on - strand, within IAI47_19715 at 171.067 kb on + strand, within IAI47_19715 at 171.124 kb on + strand, within IAI47_19715 at 171.140 kb on - strand, within IAI47_19715 at 171.140 kb on - strand, within IAI47_19715 at 171.141 kb on + strand, within IAI47_19715 at 171.142 kb on - strand, within IAI47_19715 at 171.187 kb on + strand, within IAI47_19715 at 171.187 kb on + strand, within IAI47_19715 at 171.188 kb on - strand, within IAI47_19715 at 171.188 kb on - strand, within IAI47_19715 at 171.226 kb on + strand, within IAI47_19715 at 171.249 kb on + strand, within IAI47_19715 at 171.249 kb on + strand, within IAI47_19715 at 171.250 kb on - strand, within IAI47_19715 at 171.250 kb on - strand, within IAI47_19715 at 171.262 kb on + strand, within IAI47_19715 at 171.262 kb on + strand, within IAI47_19715 at 171.262 kb on + strand, within IAI47_19715 at 171.262 kb on + strand, within IAI47_19715 at 171.262 kb on + strand, within IAI47_19715 at 171.262 kb on + strand, within IAI47_19715 at 171.263 kb on - strand, within IAI47_19715 at 171.263 kb on - strand, within IAI47_19715 at 171.263 kb on - strand, within IAI47_19715 at 171.263 kb on - strand, within IAI47_19715 at 171.263 kb on - strand, within IAI47_19715 at 171.263 kb on - strand, within IAI47_19715 at 171.263 kb on - strand, within IAI47_19715 at 171.263 kb on - strand, within IAI47_19715 at 171.265 kb on + strand, within IAI47_19715 at 171.265 kb on + strand, within IAI47_19715 at 171.266 kb on - strand, within IAI47_19715 at 171.266 kb on - strand, within IAI47_19715 at 171.297 kb on + strand, within IAI47_19715 at 171.297 kb on + strand, within IAI47_19715 at 171.297 kb on + strand, within IAI47_19715 at 171.297 kb on + strand, within IAI47_19715 at 171.297 kb on + strand, within IAI47_19715 at 171.298 kb on - strand, within IAI47_19715 at 171.298 kb on - strand, within IAI47_19715 at 171.305 kb on + strand, within IAI47_19715 at 171.306 kb on - strand, within IAI47_19715 at 171.306 kb on - strand, within IAI47_19715 at 171.307 kb on + strand, within IAI47_19715 at 171.307 kb on + strand, within IAI47_19715 at 171.307 kb on + strand, within IAI47_19715 at 171.307 kb on + strand, within IAI47_19715 at 171.308 kb on - strand, within IAI47_19715 at 171.308 kb on - strand, within IAI47_19715 at 171.308 kb on - strand, within IAI47_19715 at 171.308 kb on - strand, within IAI47_19715 at 171.345 kb on + strand, within IAI47_19715 at 171.345 kb on + strand, within IAI47_19715 at 171.345 kb on + strand, within IAI47_19715 at 171.345 kb on + strand, within IAI47_19715 at 171.346 kb on - strand, within IAI47_19715 at 171.346 kb on - strand, within IAI47_19715
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 168,451 + IAI47_19700 0.68 -1.5 168,452 - IAI47_19700 0.68 +1.0 168,639 + IAI47_19700 0.84 -0.5 168,639 + IAI47_19700 0.84 -1.1 168,742 - +1.1 168,774 + +1.2 168,774 + -0.0 168,774 + -1.1 168,775 - -1.2 168,777 + -1.6 168,778 - -0.9 168,785 - -1.1 168,785 - -0.6 168,840 - -0.6 168,870 + -0.2 168,873 - -0.0 168,874 + -0.1 168,882 - -1.1 168,882 - +0.4 168,933 + +0.0 168,959 + -0.8 168,959 + -1.0 168,968 + -0.2 168,968 + +0.4 168,969 - -0.8 168,977 + +0.3 168,977 + +0.7 168,978 - -2.1 169,013 + -0.6 169,039 - +0.7 169,040 + -0.8 169,040 + +0.7 169,041 - -0.5 169,041 - -0.7 169,052 + +0.1 169,052 + -0.1 169,053 - +1.5 169,053 - +1.4 169,053 - -1.9 169,079 + +0.1 169,086 + -1.7 169,103 + -1.8 169,104 - +0.2 169,104 - +0.4 169,104 - -1.2 169,116 + +2.4 169,116 + -0.3 169,116 + -2.5 169,116 + +0.7 169,117 - +0.2 169,117 - +1.5 169,141 + +1.1 169,141 + -2.2 169,141 + -1.1 169,141 + +1.4 169,141 + +0.2 169,141 + -0.9 169,142 - -0.1 169,142 - -0.2 169,150 + -1.9 169,194 + +2.6 169,195 - +0.0 169,195 - +1.2 169,264 + -1.0 169,316 - -0.7 169,324 + -0.4 169,324 + -1.0 169,324 + +1.4 169,325 - +0.0 169,325 - +0.7 169,325 - +0.9 169,331 + +0.7 169,332 - -0.9 169,332 - +0.5 169,332 - -0.6 169,336 - +0.1 169,336 - +1.2 169,336 - -1.8 169,346 + +0.2 169,370 + +0.8 169,373 + +1.9 169,374 - -1.2 169,374 - +0.9 169,380 + +0.6 169,380 + +0.4 169,380 + +0.5 169,381 - +0.2 169,381 - -0.7 169,386 + -0.7 169,387 - +0.4 169,449 + +0.3 169,449 + +0.3 169,450 - -1.8 169,450 - +0.1 169,450 - +0.5 169,450 - -0.6 169,450 - +1.7 169,450 - +0.4 169,451 + +2.4 169,452 - +0.2 169,452 - -0.3 169,468 + +2.5 169,516 + +0.4 169,516 + -0.3 169,516 + +0.6 169,517 - +1.2 169,517 - +2.8 169,517 - +0.5 169,517 - -0.3 169,517 - -0.5 169,517 - +1.2 169,517 - -0.3 169,592 + IAI47_19705 0.16 +0.2 169,593 - IAI47_19705 0.16 -1.3 169,593 - IAI47_19705 0.16 -0.8 169,655 + IAI47_19705 0.22 -0.3 169,655 + IAI47_19705 0.22 +3.6 169,672 - IAI47_19705 0.24 +0.5 169,704 + IAI47_19705 0.27 +1.0 169,704 + IAI47_19705 0.27 +0.2 169,705 - IAI47_19705 0.27 +0.6 169,705 - IAI47_19705 0.27 +2.4 169,727 + IAI47_19705 0.30 -0.1 169,728 - IAI47_19705 0.30 +0.7 169,728 - IAI47_19705 0.30 -0.2 169,728 - IAI47_19705 0.30 -0.7 169,764 - IAI47_19705 0.34 +0.4 169,764 - IAI47_19705 0.34 -1.5 169,764 - IAI47_19705 0.34 -2.6 169,799 + IAI47_19705 0.37 +0.8 169,799 + IAI47_19705 0.37 +0.4 169,799 + IAI47_19705 0.37 +0.5 169,799 + IAI47_19705 0.37 +0.2 169,847 + IAI47_19705 0.42 +0.9 169,848 - IAI47_19705 0.42 +1.2 169,848 - IAI47_19705 0.42 -0.3 169,848 - IAI47_19705 0.42 +0.8 169,864 - IAI47_19705 0.44 -2.1 169,864 - IAI47_19705 0.44 +2.5 169,899 - IAI47_19705 0.47 +0.7 169,949 + IAI47_19705 0.53 +1.4 169,949 + IAI47_19705 0.53 -0.5 169,950 - IAI47_19705 0.53 -1.8 169,984 - IAI47_19705 0.56 -0.7 170,048 + IAI47_19705 0.63 -2.3 170,048 + IAI47_19705 0.63 +0.8 170,048 + IAI47_19705 0.63 -1.0 170,048 + IAI47_19705 0.63 -0.1 170,049 - IAI47_19705 0.63 -1.4 170,049 - IAI47_19705 0.63 +0.4 170,079 + IAI47_19705 0.66 -0.7 170,079 + IAI47_19705 0.66 +1.4 170,079 + IAI47_19705 0.66 +1.9 170,080 - IAI47_19705 0.66 +0.8 170,080 - IAI47_19705 0.66 +0.9 170,080 - IAI47_19705 0.66 -0.6 170,082 + IAI47_19705 0.66 -0.3 170,082 + IAI47_19705 0.66 +0.0 170,082 + IAI47_19705 0.66 -0.3 170,123 + IAI47_19705 0.70 +1.1 170,133 + IAI47_19705 0.72 +1.1 170,134 - IAI47_19705 0.72 +0.1 170,171 + IAI47_19705 0.75 +0.1 170,172 - IAI47_19705 0.76 -0.0 170,172 - IAI47_19705 0.76 -0.7 170,219 - IAI47_19705 0.80 -1.3 170,237 - IAI47_19705 0.82 -0.6 170,237 - IAI47_19705 0.82 -0.4 170,237 - IAI47_19705 0.82 -2.2 170,254 + IAI47_19705 0.84 -0.1 170,254 + IAI47_19705 0.84 -2.1 170,254 + IAI47_19705 0.84 -0.3 170,254 + IAI47_19705 0.84 +0.3 170,254 + IAI47_19705 0.84 +1.4 170,254 + IAI47_19705 0.84 -2.5 170,255 - IAI47_19705 0.84 +0.9 170,296 + IAI47_19705 0.88 +1.2 170,296 + IAI47_19705 0.88 +1.2 170,314 + -0.8 170,315 - +0.2 170,315 - +0.2 170,315 - -0.1 170,315 - -0.6 170,323 + -1.1 170,324 - +2.1 170,343 + -0.6 170,344 - +0.8 170,344 - -2.0 170,344 - +0.2 170,351 + +0.7 170,352 - -2.5 170,352 - +0.4 170,357 - -0.3 170,361 + +3.0 170,361 + +1.1 170,361 + +1.4 170,370 + +1.5 170,370 + +0.6 170,370 + +1.0 170,371 - +0.4 170,371 - -1.9 170,371 - -1.8 170,385 + -1.1 170,385 + +0.4 170,386 - -0.8 170,407 + +1.8 170,491 + -0.3 170,491 + +1.1 170,528 - -1.2 170,666 + IAI47_19710 0.22 +0.2 170,666 + IAI47_19710 0.22 +0.9 170,683 + IAI47_19710 0.28 -0.8 170,683 + IAI47_19710 0.28 +2.8 170,699 + IAI47_19710 0.33 +1.4 170,835 + IAI47_19710 0.75 +0.2 170,878 + IAI47_19710 0.89 -3.0 170,885 + -0.2 170,885 + +1.7 170,885 + +1.6 170,889 + +1.5 170,890 - +1.0 170,890 - +0.5 170,890 - +0.1 170,890 - +1.1 170,890 - +1.1 170,890 - +1.7 170,977 + IAI47_19715 0.13 +0.4 170,996 + IAI47_19715 0.16 -0.3 170,996 + IAI47_19715 0.16 -0.6 170,996 + IAI47_19715 0.16 +0.9 170,997 - IAI47_19715 0.17 -0.5 171,055 + IAI47_19715 0.28 -1.0 171,056 - IAI47_19715 0.28 +3.2 171,067 + IAI47_19715 0.30 +1.8 171,124 + IAI47_19715 0.41 +0.5 171,140 - IAI47_19715 0.44 -1.0 171,140 - IAI47_19715 0.44 -0.1 171,141 + IAI47_19715 0.44 +0.2 171,142 - IAI47_19715 0.44 -1.1 171,187 + IAI47_19715 0.53 +0.1 171,187 + IAI47_19715 0.53 -0.3 171,188 - IAI47_19715 0.53 -0.2 171,188 - IAI47_19715 0.53 -0.3 171,226 + IAI47_19715 0.60 -0.1 171,249 + IAI47_19715 0.64 -0.2 171,249 + IAI47_19715 0.64 -1.0 171,250 - IAI47_19715 0.65 +0.2 171,250 - IAI47_19715 0.65 -1.1 171,262 + IAI47_19715 0.67 +0.6 171,262 + IAI47_19715 0.67 +0.8 171,262 + IAI47_19715 0.67 -0.9 171,262 + IAI47_19715 0.67 +0.2 171,262 + IAI47_19715 0.67 -1.5 171,262 + IAI47_19715 0.67 +0.4 171,263 - IAI47_19715 0.67 +0.1 171,263 - IAI47_19715 0.67 -0.3 171,263 - IAI47_19715 0.67 -1.1 171,263 - IAI47_19715 0.67 +2.1 171,263 - IAI47_19715 0.67 +3.0 171,263 - IAI47_19715 0.67 +0.5 171,263 - IAI47_19715 0.67 +0.2 171,263 - IAI47_19715 0.67 -2.1 171,265 + IAI47_19715 0.67 +0.1 171,265 + IAI47_19715 0.67 -0.9 171,266 - IAI47_19715 0.68 -1.5 171,266 - IAI47_19715 0.68 +0.7 171,297 + IAI47_19715 0.73 -2.0 171,297 + IAI47_19715 0.73 -0.2 171,297 + IAI47_19715 0.73 +1.4 171,297 + IAI47_19715 0.73 +1.2 171,297 + IAI47_19715 0.73 +0.6 171,298 - IAI47_19715 0.74 -1.8 171,298 - IAI47_19715 0.74 +0.2 171,305 + IAI47_19715 0.75 +1.9 171,306 - IAI47_19715 0.75 +1.6 171,306 - IAI47_19715 0.75 -1.1 171,307 + IAI47_19715 0.75 +1.2 171,307 + IAI47_19715 0.75 -1.4 171,307 + IAI47_19715 0.75 +0.2 171,307 + IAI47_19715 0.75 +0.2 171,308 - IAI47_19715 0.76 +0.5 171,308 - IAI47_19715 0.76 +0.0 171,308 - IAI47_19715 0.76 +0.7 171,308 - IAI47_19715 0.76 +0.5 171,345 + IAI47_19715 0.83 -2.2 171,345 + IAI47_19715 0.83 -0.6 171,345 + IAI47_19715 0.83 +0.0 171,345 + IAI47_19715 0.83 -2.2 171,346 - IAI47_19715 0.83 -0.7 171,346 - IAI47_19715 0.83 +0.3
Or see this region's nucleotide sequence