Strain Fitness in Pantoea sp. MT58 around IAI47_18870

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
5,424	+				-1.8
5,438	+				-0.8
5,438	+				-1.6
5,438	+				-0.3
5,438	+				-1.3
5,439	-				-1.2
5,439	-				+2.2
5,439	-				+0.8
5,439	-				+0.7
5,439	-				-0.9
5,467	-				-0.3
5,472	+				-0.3
5,473	-				-0.2
5,486	+				+1.1
5,486	+				+0.8
5,547	+				-0.4
5,547	+				-2.8
5,548	-				+0.7
5,548	-				+0.6
5,548	-				+0.2
5,548	-				-1.3
5,556	+				-1.1
5,556	+				+1.2
5,557	-				-0.3
5,557	-				+1.1
5,557	-				+0.8
5,557	-				-0.5
5,561	+				+1.7
5,561	+				+0.9
5,561	+				+0.1
5,562	-				+1.1
5,579	+				-0.3
5,579	+				+1.2
5,580	-				+0.7
5,586	+				-2.3
5,586	+				-1.1
5,587	-				-0.1
5,600	+				+2.0
5,601	-				-0.3
5,601	-				-2.3
5,601	-				-1.2
5,601	-				+1.2
5,622	+				+2.2
5,624	+				-1.9
5,625	-				+1.3
5,639	+				+0.1
5,639	+				-0.8
5,639	+				-0.5
5,672	+				-0.6
5,672	+				-0.8
5,672	+				-1.0
5,673	-				+0.2
5,673	-				-2.3
5,673	-				+0.1
5,673	-				+1.6
5,673	-				+1.4
5,673	-				-1.1
5,685	+				+3.5
5,686	-				-0.1
5,686	-				-0.3
5,753	+				-2.8
5,753	+				-0.2
5,792	+				+1.1
5,805	+				-1.0
5,806	-				+0.2
5,806	-				-1.1
5,813	-				+1.1
5,813	-				-1.6
5,843	+				+1.2
5,875	+				+0.4
5,875	+				+1.2
5,875	+				-1.8
5,875	+				+1.7
5,875	+				-1.1
5,875	+				-0.5
5,875	+				+1.6
5,876	-				-0.1
5,876	-				+1.7
5,876	-				-0.0
5,876	-				-0.5
5,876	-				-1.0
5,878	-				+0.0
5,888	+				-0.9
5,888	+				+1.0
5,888	+				-1.5
5,888	+				-0.8
5,888	+				-3.1
5,889	-				+0.2
5,889	-				+0.6
5,889	-				-2.0
5,894	+				+0.5
5,894	+				+0.6
5,894	+				+0.4
5,894	+				+0.8
5,894	+				+0.5
5,895	-				-0.2
5,895	-				-1.3
5,931	-				+0.6
5,931	-				-0.5
5,949	+				+0.0
5,949	+				+0.5
5,949	+				-1.0
5,989	+				-1.8
5,990	-				-3.2
6,009	-				-1.3
6,043	-				-1.5
6,117	+				-0.2
6,117	+				+0.7
6,118	-				-1.0
6,118	-				-1.0
6,139	+				-0.9
6,140	-				-0.5
6,182	+				+0.5
6,182	+				+0.7
6,182	+				+0.7
6,229	-				+1.0
6,246	+				+0.8
6,246	+				-0.8
6,246	+				-2.3
6,247	-				+0.7
6,247	-				-0.8
6,251	-				+0.3
6,251	-				+1.0
6,254	+				-0.4
6,254	+				-0.3
6,255	-				+1.5
6,255	-				+1.5
6,273	+				+0.4
6,274	-				+0.7
6,279	+				-1.8
6,280	-				-1.0
6,280	-				+0.3
6,285	+				+1.7
6,296	+				+2.1
6,304	-				+2.0
6,325	-				+0.1
6,329	-				+0.5
6,373	+				+0.5
6,378	+				+0.6
6,378	+				-0.8
6,378	+				-1.1
6,379	-				-2.5
6,379	-				+0.3
6,379	-				+1.3
6,381	+				+0.2
6,381	+				-1.6
6,382	-				+0.4
6,393	+				+0.2
6,394	-				+0.2
6,394	-				+0.5
6,394	-				+1.9
6,396	+				+0.0
6,396	+				-1.7
6,396	+				-1.0
6,397	-				+0.2
6,402	+				+0.2
6,402	+				+1.1
6,402	+				-1.4
6,403	-				-1.6
6,408	+				-1.2
6,456	-				-0.7
6,492	+				+0.7
6,493	-				+0.7
6,514	+				-1.1
6,514	+				+2.2
6,515	-				-2.2
6,515	-				+1.4
6,542	+				+0.5
6,543	-		IAI47_18870	0.10	-2.0
6,543	-		IAI47_18870	0.10	-2.5
6,547	+		IAI47_18870	0.10	+0.2
6,547	+		IAI47_18870	0.10	+0.3
6,547	+		IAI47_18870	0.10	+0.9
6,547	+		IAI47_18870	0.10	+0.2
6,547	+		IAI47_18870	0.10	+0.4
6,547	+		IAI47_18870	0.10	+1.2
6,547	+		IAI47_18870	0.10	+0.1
6,547	+		IAI47_18870	0.10	+0.4
6,548	-		IAI47_18870	0.10	+0.1
6,548	-		IAI47_18870	0.10	-2.1
6,548	-		IAI47_18870	0.10	-0.5
6,548	-		IAI47_18870	0.10	-0.2
6,548	-		IAI47_18870	0.10	-2.6
6,548	-		IAI47_18870	0.10	+1.7
6,548	-		IAI47_18870	0.10	-0.1
6,549	+		IAI47_18870	0.10	+0.1
6,549	+		IAI47_18870	0.10	+1.5
6,549	+		IAI47_18870	0.10	+2.5
6,550	-		IAI47_18870	0.11	-2.1
6,550	-		IAI47_18870	0.11	-1.6
6,550	-		IAI47_18870	0.11	+1.0
6,550	-		IAI47_18870	0.11	-1.3
6,608	+		IAI47_18870	0.15	-1.6
6,609	-		IAI47_18870	0.15	+2.4
6,684	+		IAI47_18870	0.20	+0.3
6,685	-		IAI47_18870	0.20	+0.5
6,687	+		IAI47_18870	0.20	-0.5
6,688	-		IAI47_18870	0.20	-0.6
6,693	-		IAI47_18870	0.20	+0.9
6,756	+		IAI47_18870	0.25	+0.9
6,756	+		IAI47_18870	0.25	-0.8
6,756	+		IAI47_18870	0.25	-1.6
6,757	-		IAI47_18870	0.25	+0.7
6,757	-		IAI47_18870	0.25	+0.2
6,757	-		IAI47_18870	0.25	-2.2
6,757	-		IAI47_18870	0.25	+0.2
6,759	+		IAI47_18870	0.25	-0.2
6,759	+		IAI47_18870	0.25	-1.1
6,759	+		IAI47_18870	0.25	+2.1
6,759	+		IAI47_18870	0.25	-1.1
6,760	-		IAI47_18870	0.25	+0.2
6,760	-		IAI47_18870	0.25	+0.2
6,760	-		IAI47_18870	0.25	+0.4
6,760	-		IAI47_18870	0.25	-1.8
6,760	-		IAI47_18870	0.25	-2.3
6,760	-		IAI47_18870	0.25	-0.1
6,825	+		IAI47_18870	0.29	-0.2
6,867	-		IAI47_18870	0.32	-1.5
6,903	+		IAI47_18870	0.35	-0.8
6,903	+		IAI47_18870	0.35	+0.3
6,903	+		IAI47_18870	0.35	-0.8
6,903	+		IAI47_18870	0.35	+0.0
6,904	-		IAI47_18870	0.35	+1.9
6,904	-		IAI47_18870	0.35	+0.5
6,904	-		IAI47_18870	0.35	+1.1
6,904	-		IAI47_18870	0.35	-1.5
6,910	+		IAI47_18870	0.35	+1.3
6,910	+		IAI47_18870	0.35	-1.5
6,911	-		IAI47_18870	0.35	+0.7
6,922	-		IAI47_18870	0.36	+1.1
6,934	+		IAI47_18870	0.37	+2.2
6,964	+		IAI47_18870	0.39	+2.2
6,964	+		IAI47_18870	0.39	-0.2
6,964	+		IAI47_18870	0.39	+1.8
6,964	+		IAI47_18870	0.39	+1.4
6,965	-		IAI47_18870	0.39	-0.8
6,965	-		IAI47_18870	0.39	+0.0
6,965	-		IAI47_18870	0.39	+0.9
6,965	-		IAI47_18870	0.39	+0.5
7,061	+		IAI47_18870	0.46	-1.1
7,087	+		IAI47_18870	0.48	+0.2
7,087	+		IAI47_18870	0.48	-0.3
7,216	-		IAI47_18870	0.56	-2.4
7,223	+		IAI47_18870	0.57	-0.8
7,223	+		IAI47_18870	0.57	+0.4
7,223	+		IAI47_18870	0.57	-0.1
7,224	-		IAI47_18870	0.57	-1.3
7,249	-		IAI47_18870	0.59	-2.5
7,249	-		IAI47_18870	0.59	-1.2
7,270	+		IAI47_18870	0.60	+0.5
7,270	+		IAI47_18870	0.60	-1.7
7,271	-		IAI47_18870	0.60	-2.8
7,271	-		IAI47_18870	0.60	-0.9
7,271	-		IAI47_18870	0.60	-0.1
7,271	-		IAI47_18870	0.60	-3.4
7,271	-		IAI47_18870	0.60	+0.2
7,273	+		IAI47_18870	0.60	+0.0
7,273	+		IAI47_18870	0.60	-1.3
7,273	+		IAI47_18870	0.60	-0.8
7,273	+		IAI47_18870	0.60	-2.2
7,274	-		IAI47_18870	0.60	-0.2
7,274	-		IAI47_18870	0.60	-1.7
7,274	-		IAI47_18870	0.60	-1.5
7,274	-		IAI47_18870	0.60	-0.6
7,338	+		IAI47_18870	0.65	-0.8
7,339	-		IAI47_18870	0.65	+1.0
7,387	-		IAI47_18870	0.68	-1.2
7,387	-		IAI47_18870	0.68	-1.4
7,424	+		IAI47_18870	0.71	-0.6
7,424	+		IAI47_18870	0.71	-0.8
7,424	+		IAI47_18870	0.71	+0.1
7,473	+		IAI47_18870	0.74	-0.9
7,473	+		IAI47_18870	0.74	-0.6
7,473	+		IAI47_18870	0.74	-0.0
7,474	-		IAI47_18870	0.74	+0.4
7,474	-		IAI47_18870	0.74	-0.8
7,498	+		IAI47_18870	0.76	+0.2
7,499	-		IAI47_18870	0.76	-1.1
7,536	+		IAI47_18870	0.78	-0.2
7,537	-		IAI47_18870	0.79	-2.2
7,537	-		IAI47_18870	0.79	-0.5
7,561	+		IAI47_18870	0.80	+2.4
7,561	+		IAI47_18870	0.80	+0.8
7,607	+		IAI47_18870	0.83	-0.6
7,607	+		IAI47_18870	0.83	+2.2
7,610	+		IAI47_18870	0.84	-1.0
7,610	+		IAI47_18870	0.84	-0.9
7,631	+		IAI47_18870	0.85	+1.2
7,631	+		IAI47_18870	0.85	-1.7
7,632	-		IAI47_18870	0.85	+1.5
7,640	+		IAI47_18870	0.86	+1.7
7,640	+		IAI47_18870	0.86	+0.4
7,640	+		IAI47_18870	0.86	+0.7
7,640	+		IAI47_18870	0.86	+0.4
7,640	+		IAI47_18870	0.86	+1.4
7,641	-		IAI47_18870	0.86	+0.1
7,644	+		IAI47_18870	0.86	+2.4
7,644	+		IAI47_18870	0.86	-0.9
7,644	+		IAI47_18870	0.86	-0.3
7,644	+		IAI47_18870	0.86	-1.0
7,644	+		IAI47_18870	0.86	-0.4
7,645	-		IAI47_18870	0.86	-0.8
7,645	-		IAI47_18870	0.86	+2.5
7,645	-		IAI47_18870	0.86	-0.5
7,645	-		IAI47_18870	0.86	-1.3
7,645	-		IAI47_18870	0.86	-2.9
7,645	-		IAI47_18870	0.86	+0.1
7,645	-		IAI47_18870	0.86	-2.1
7,645	-		IAI47_18870	0.86	+1.6
7,677	+		IAI47_18870	0.88	-0.5
7,684	+		IAI47_18870	0.89	-2.7
7,684	+		IAI47_18870	0.89	+2.4
7,684	+		IAI47_18870	0.89	+0.6
7,684	+		IAI47_18870	0.89	+0.9
7,685	-		IAI47_18870	0.89	+1.4
7,707	+				-1.1
7,722	+				+0.4
7,723	-				-2.1
7,723	-				-0.0
7,736	+				-1.3
7,844	+				+1.2
7,844	+				-1.0
7,845	-				+0.2
7,846	+				-0.3
7,846	+				-1.6
7,846	+				+0.3
7,847	-				-0.8
7,847	-				+0.4
7,887	+				+0.1
7,895	+				-1.5
7,961	+				+0.3
7,962	-				-0.1
7,962	-				-0.7
7,962	-				-0.4
7,972	+				+1.0
7,983	-				-0.8
8,047	+				+0.2
8,048	-				-1.2
8,070	+				-1.1
8,070	+				+0.3
8,070	+				-0.8
8,071	-				-0.2
8,075	+				-1.5
8,075	+				+1.4
8,076	-				-0.7
8,076	-				-0.8
8,076	-				+0.2
8,076	-				-1.0
8,076	-				-0.8
8,076	-				-0.8
8,076	-				-1.9
8,084	+				+0.6
8,084	+				+0.7
8,115	-				-0.9
8,115	-				+1.2
8,117	-				+0.5
8,147	+				+0.9
8,147	+				+0.9
8,147	+				+1.0
8,147	+				+0.3
8,147	+				-1.2
8,147	+				-1.1
8,147	+				+0.2
8,148	-				-0.6
8,148	-				-0.6
8,148	-				-1.8
8,148	-				+0.4
8,148	-				-1.2
8,176	+				-1.3
8,176	+				-0.1
8,176	+				-1.5
8,176	+				+0.4
8,176	+				-0.1
8,176	+				+1.1
8,177	-				+0.0
8,177	-				-0.0
8,177	-				+1.3
8,201	-				-0.3
8,241	+				+1.0
8,241	+				-2.3
8,244	+				-1.8
8,244	+				-0.8
8,244	+				+1.1
8,245	-				+0.4
8,245	-				+3.5
8,250	+				+1.3
8,251	-				+0.5
8,251	-				+1.1
8,270	+				-1.2
8,270	+				-0.9
8,271	-				-1.8
8,271	-				-0.3
8,295	+				-0.1
8,357	+		IAI47_18875	0.12	-1.8
8,357	+		IAI47_18875	0.12	-2.2
8,357	+		IAI47_18875	0.12	-1.3
8,357	+		IAI47_18875	0.12	+0.2
8,357	+		IAI47_18875	0.12	+1.0
8,358	-		IAI47_18875	0.12	+0.2
8,358	-		IAI47_18875	0.12	+3.1
8,358	-		IAI47_18875	0.12	-1.8
8,358	-		IAI47_18875	0.12	+1.1
8,358	-		IAI47_18875	0.12	-1.1
8,358	-		IAI47_18875	0.12	-2.3
8,366	+		IAI47_18875	0.13	-0.8
8,367	-		IAI47_18875	0.13	+0.4
8,367	-		IAI47_18875	0.13	+0.9
8,393	-		IAI47_18875	0.14	+0.5
8,449	+		IAI47_18875	0.18	-1.1
8,456	+		IAI47_18875	0.19	-0.9
8,457	-		IAI47_18875	0.19	-1.2
8,457	-		IAI47_18875	0.19	-0.2
8,459	+		IAI47_18875	0.19	-1.4
8,460	-		IAI47_18875	0.19	-0.8
8,477	+		IAI47_18875	0.20	-0.6
8,477	+		IAI47_18875	0.20	-0.3
8,477	+		IAI47_18875	0.20	+0.2
8,477	+		IAI47_18875	0.20	+1.0
8,478	-		IAI47_18875	0.20	-1.2
8,478	-		IAI47_18875	0.20	-0.8
8,478	-		IAI47_18875	0.20	+0.2
8,478	-		IAI47_18875	0.20	-0.1
8,513	+		IAI47_18875	0.22	+1.2
8,514	-		IAI47_18875	0.22	+0.2
8,514	-		IAI47_18875	0.22	-1.5
8,514	-		IAI47_18875	0.22	-1.6
8,514	-		IAI47_18875	0.22	-0.3
8,514	-		IAI47_18875	0.22	-2.5
8,514	-		IAI47_18875	0.22	-0.5
8,515	+		IAI47_18875	0.23	+2.7
8,559	+		IAI47_18875	0.25	-1.3
8,560	-		IAI47_18875	0.26	+0.2
8,560	-		IAI47_18875	0.26	-0.4
8,560	-		IAI47_18875	0.26	+1.2
8,582	+		IAI47_18875	0.27	-1.5
8,582	+		IAI47_18875	0.27	+1.3
8,582	+		IAI47_18875	0.27	-1.9
8,582	+		IAI47_18875	0.27	-1.0
8,582	+		IAI47_18875	0.27	-1.0
8,583	-		IAI47_18875	0.27	-0.6
8,583	-		IAI47_18875	0.27	-0.6
8,585	-		IAI47_18875	0.27	-1.8
8,585	-		IAI47_18875	0.27	+1.0
8,590	-		IAI47_18875	0.28	-2.4
8,625	-		IAI47_18875	0.30	+1.2
8,641	-		IAI47_18875	0.31	+0.2
8,659	+		IAI47_18875	0.32	-2.0
8,659	+		IAI47_18875	0.32	+0.5
8,685	+		IAI47_18875	0.34	-1.1
8,685	+		IAI47_18875	0.34	-0.3
8,686	-		IAI47_18875	0.34	+0.8