Strain Fitness in Pantoea sp. MT58 around IAI47_18475

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,929,090	+		IAI47_18470	0.27	-1.7
3,929,113	+		IAI47_18470	0.29	-2.9
3,929,113	+		IAI47_18470	0.29	-2.4
3,929,113	+		IAI47_18470	0.29	-3.7
3,929,113	+		IAI47_18470	0.29	-0.6
3,929,113	+		IAI47_18470	0.29	-3.2
3,929,113	+		IAI47_18470	0.29	-1.6
3,929,113	+		IAI47_18470	0.29	-3.7
3,929,113	+		IAI47_18470	0.29	-2.6
3,929,114	-		IAI47_18470	0.29	-2.7
3,929,114	-		IAI47_18470	0.29	-2.2
3,929,114	-		IAI47_18470	0.29	-4.1
3,929,128	-		IAI47_18470	0.30	-2.8
3,929,128	-		IAI47_18470	0.30	-1.1
3,929,128	-		IAI47_18470	0.30	-1.6
3,929,224	+		IAI47_18470	0.37	-3.7
3,929,224	+		IAI47_18470	0.37	-3.6
3,929,224	+		IAI47_18470	0.37	-3.1
3,929,224	+		IAI47_18470	0.37	-2.3
3,929,224	+		IAI47_18470	0.37	+0.2
3,929,224	+		IAI47_18470	0.37	-1.2
3,929,224	+		IAI47_18470	0.37	-0.9
3,929,225	-		IAI47_18470	0.37	-2.3
3,929,225	-		IAI47_18470	0.37	-3.7
3,929,225	-		IAI47_18470	0.37	-3.2
3,929,225	-		IAI47_18470	0.37	-2.1
3,929,267	+		IAI47_18470	0.41	-2.3
3,929,267	+		IAI47_18470	0.41	-2.6
3,929,267	+		IAI47_18470	0.41	-2.9
3,929,267	+		IAI47_18470	0.41	-3.2
3,929,268	-		IAI47_18470	0.41	-2.5
3,929,268	-		IAI47_18470	0.41	-3.5
3,929,268	-		IAI47_18470	0.41	-3.5
3,929,268	-		IAI47_18470	0.41	-3.6
3,929,268	-		IAI47_18470	0.41	+0.1
3,929,281	+		IAI47_18470	0.42	-0.5
3,929,281	+		IAI47_18470	0.42	-2.7
3,929,281	+		IAI47_18470	0.42	-3.4
3,929,281	+		IAI47_18470	0.42	-1.7
3,929,282	-		IAI47_18470	0.42	-2.5
3,929,282	-		IAI47_18470	0.42	-1.5
3,929,291	+		IAI47_18470	0.42	+0.3
3,929,291	+		IAI47_18470	0.42	-0.1
3,929,291	+		IAI47_18470	0.42	-1.4
3,929,291	+		IAI47_18470	0.42	+0.9
3,929,292	-		IAI47_18470	0.42	-3.2
3,929,313	+		IAI47_18470	0.44	-3.8
3,929,313	+		IAI47_18470	0.44	-2.4
3,929,313	+		IAI47_18470	0.44	-1.4
3,929,313	+		IAI47_18470	0.44	-1.6
3,929,314	-		IAI47_18470	0.44	-2.8
3,929,314	-		IAI47_18470	0.44	-2.0
3,929,326	+		IAI47_18470	0.45	-3.1
3,929,326	+		IAI47_18470	0.45	-3.3
3,929,327	-		IAI47_18470	0.45	-1.2
3,929,327	-		IAI47_18470	0.45	-5.0
3,929,327	-		IAI47_18470	0.45	-4.0
3,929,327	-		IAI47_18470	0.45	-2.5
3,929,368	-		IAI47_18470	0.48	-2.1
3,929,444	+		IAI47_18470	0.54	-1.9
3,929,444	+		IAI47_18470	0.54	-1.9
3,929,444	+		IAI47_18470	0.54	+0.1
3,929,444	+		IAI47_18470	0.54	-3.7
3,929,444	+		IAI47_18470	0.54	-1.6
3,929,445	-		IAI47_18470	0.54	-4.0
3,929,445	-		IAI47_18470	0.54	-2.9
3,929,445	-		IAI47_18470	0.54	-3.4
3,929,450	+		IAI47_18470	0.54	-3.5
3,929,451	-		IAI47_18470	0.54	-3.9
3,929,479	+		IAI47_18470	0.56	-1.9
3,929,479	+		IAI47_18470	0.56	-0.9
3,929,479	+		IAI47_18470	0.56	-1.5
3,929,479	+		IAI47_18470	0.56	-0.7
3,929,480	-		IAI47_18470	0.56	-3.0
3,929,480	-		IAI47_18470	0.56	-3.3
3,929,480	-		IAI47_18470	0.56	-2.3
3,929,480	-		IAI47_18470	0.56	-2.0
3,929,574	-		IAI47_18470	0.63	-1.8
3,929,578	-		IAI47_18470	0.64	-2.0
3,929,582	-		IAI47_18470	0.64	-0.2
3,929,582	-		IAI47_18470	0.64	-1.3
3,929,582	-		IAI47_18470	0.64	-2.4
3,929,582	-		IAI47_18470	0.64	-1.5
3,929,582	-		IAI47_18470	0.64	-2.3
3,929,634	-		IAI47_18470	0.68	-3.1
3,929,635	+		IAI47_18470	0.68	-1.3
3,929,635	+		IAI47_18470	0.68	+1.5
3,929,635	+		IAI47_18470	0.68	+0.4
3,929,635	+		IAI47_18470	0.68	-0.6
3,929,635	+		IAI47_18470	0.68	-1.7
3,929,636	-		IAI47_18470	0.68	-3.3
3,929,636	-		IAI47_18470	0.68	-1.2
3,929,636	-		IAI47_18470	0.68	-1.3
3,929,798	+		IAI47_18470	0.80	-0.3
3,929,798	+		IAI47_18470	0.80	-0.7
3,929,798	+		IAI47_18470	0.80	-0.6
3,929,800	+		IAI47_18470	0.80	-0.4
3,929,800	+		IAI47_18470	0.80	-1.3
3,929,800	+		IAI47_18470	0.80	-0.9
3,929,800	+		IAI47_18470	0.80	-2.8
3,929,801	-		IAI47_18470	0.80	-1.4
3,929,801	-		IAI47_18470	0.80	-2.1
3,929,801	-		IAI47_18470	0.80	-2.6
3,929,809	+		IAI47_18470	0.81	-1.7
3,929,810	-		IAI47_18470	0.81	-0.8
3,929,810	-		IAI47_18470	0.81	-2.3
3,929,812	+		IAI47_18470	0.81	-0.9
3,929,812	+		IAI47_18470	0.81	-0.7
3,929,812	+		IAI47_18470	0.81	-0.6
3,929,812	+		IAI47_18470	0.81	-1.6
3,929,813	-		IAI47_18470	0.81	-0.6
3,929,813	-		IAI47_18470	0.81	-3.5
3,929,882	+		IAI47_18470	0.86	-0.6
3,929,883	-		IAI47_18470	0.86	-2.1
3,929,923	+		IAI47_18470	0.89	-1.3
3,929,924	-		IAI47_18470	0.89	-3.3
3,929,924	-		IAI47_18470	0.89	-0.4
3,929,924	-		IAI47_18470	0.89	+0.3
3,929,934	+				-3.8
3,929,934	+				-2.7
3,929,934	+				+0.1
3,929,934	+				-0.9
3,929,934	+				+1.4
3,929,934	+				-2.9
3,929,948	+				-3.8
3,929,948	+				-2.1
3,929,948	+				-1.4
3,929,948	+				-2.2
3,929,949	-				-4.1
3,929,949	-				+0.2
3,930,028	+				+0.6
3,930,028	+				-1.1
3,930,029	-				-2.9
3,930,029	-				-2.9
3,930,029	-				-2.4
3,930,056	+				+0.1
3,930,056	+				-2.0
3,930,056	+				-1.5
3,930,056	+				+0.5
3,930,056	+				-0.8
3,930,056	+				-1.9
3,930,056	+				+1.8
3,930,057	-				-3.0
3,930,057	-				-1.3
3,930,057	-				-1.6
3,930,057	-				-2.1
3,930,089	+				-1.8
3,930,090	-				-0.1
3,930,115	-				-0.4
3,930,145	+				-0.9
3,930,146	-				-1.9
3,930,199	+		IAI47_18475	0.13	+0.7
3,930,199	+		IAI47_18475	0.13	-0.9
3,930,199	+		IAI47_18475	0.13	-1.5
3,930,200	-		IAI47_18475	0.13	-0.4
3,930,200	-		IAI47_18475	0.13	-1.3
3,930,216	-		IAI47_18475	0.14	+0.8
3,930,216	-		IAI47_18475	0.14	+1.7
3,930,271	+		IAI47_18475	0.20	-0.3
3,930,272	-		IAI47_18475	0.20	-1.0
3,930,272	-		IAI47_18475	0.20	-0.9
3,930,334	+		IAI47_18475	0.25	-0.7
3,930,334	+		IAI47_18475	0.25	+0.3
3,930,335	-		IAI47_18475	0.26	-3.0
3,930,339	+		IAI47_18475	0.26	-1.2
3,930,340	-		IAI47_18475	0.26	-1.7
3,930,368	+		IAI47_18475	0.29	-1.5
3,930,372	+		IAI47_18475	0.29	-1.2
3,930,372	+		IAI47_18475	0.29	-1.3
3,930,372	+		IAI47_18475	0.29	-0.9
3,930,372	+		IAI47_18475	0.29	+0.2
3,930,372	+		IAI47_18475	0.29	-1.4
3,930,373	-		IAI47_18475	0.29	-1.5
3,930,373	-		IAI47_18475	0.29	+0.7
3,930,459	+		IAI47_18475	0.37	-1.8
3,930,459	+		IAI47_18475	0.37	-2.7
3,930,459	+		IAI47_18475	0.37	-0.2
3,930,459	+		IAI47_18475	0.37	-0.0
3,930,459	+		IAI47_18475	0.37	-1.4
3,930,459	+		IAI47_18475	0.37	+0.5
3,930,460	-		IAI47_18475	0.37	-2.4
3,930,536	+		IAI47_18475	0.44	-1.0
3,930,537	-		IAI47_18475	0.44	+0.1
3,930,547	+		IAI47_18475	0.45	-1.0
3,930,547	+		IAI47_18475	0.45	-2.0
3,930,548	-		IAI47_18475	0.46	+0.3
3,930,548	-		IAI47_18475	0.46	-0.3
3,930,556	+		IAI47_18475	0.46	-0.8
3,930,556	+		IAI47_18475	0.46	-0.4
3,930,557	-		IAI47_18475	0.46	+3.2
3,930,557	-		IAI47_18475	0.46	-1.9
3,930,557	-		IAI47_18475	0.46	-1.9
3,930,589	+		IAI47_18475	0.49	-0.2
3,930,589	+		IAI47_18475	0.49	-1.2
3,930,589	+		IAI47_18475	0.49	-1.0
3,930,590	-		IAI47_18475	0.49	-1.4
3,930,590	-		IAI47_18475	0.49	-0.4
3,930,590	-		IAI47_18475	0.49	-1.7
3,930,645	+		IAI47_18475	0.55	+1.7
3,930,645	+		IAI47_18475	0.55	-0.9
3,930,645	+		IAI47_18475	0.55	+1.0
3,930,645	+		IAI47_18475	0.55	-1.6
3,930,646	-		IAI47_18475	0.55	-1.6
3,930,646	-		IAI47_18475	0.55	-2.2
3,930,646	-		IAI47_18475	0.55	-0.4
3,930,646	-		IAI47_18475	0.55	-0.2
3,930,646	-		IAI47_18475	0.55	-1.9
3,930,684	+		IAI47_18475	0.58	-1.6
3,930,685	-		IAI47_18475	0.58	-2.1
3,930,738	-		IAI47_18475	0.63	-1.9
3,930,753	+		IAI47_18475	0.65	+0.7
3,930,753	+		IAI47_18475	0.65	-1.3
3,930,753	+		IAI47_18475	0.65	-1.6
3,930,753	+		IAI47_18475	0.65	+0.8
3,930,753	+		IAI47_18475	0.65	-1.6
3,930,754	-		IAI47_18475	0.65	-0.6
3,930,789	+		IAI47_18475	0.68	-0.4
3,930,789	+		IAI47_18475	0.68	-0.7
3,930,952	+		IAI47_18475	0.83	-1.2
3,931,007	+		IAI47_18475	0.88	-1.9
3,931,008	-		IAI47_18475	0.89	-2.3
3,931,008	-		IAI47_18475	0.89	-1.4
3,931,008	-		IAI47_18475	0.89	-0.2
3,931,008	-		IAI47_18475	0.89	+0.8
3,931,008	-		IAI47_18475	0.89	+0.1
3,931,010	+		IAI47_18475	0.89	+0.8
3,931,010	+		IAI47_18475	0.89	-1.4
3,931,010	+		IAI47_18475	0.89	+2.0
3,931,010	+		IAI47_18475	0.89	+0.0
3,931,011	-		IAI47_18475	0.89	-0.2
3,931,011	-		IAI47_18475	0.89	+0.3
3,931,011	-		IAI47_18475	0.89	+1.4
3,931,055	+				+0.1
3,931,055	+				-1.3
3,931,055	+				-0.7
3,931,055	+				-1.0
3,931,055	+				+1.1
3,931,055	+				-2.2
3,931,055	+				+1.3
3,931,055	+				-1.2
3,931,055	+				-2.0
3,931,056	-				-1.0
3,931,056	-				+0.6
3,931,056	-				+0.2
3,931,120	-				-1.1
3,931,121	+				-0.2
3,931,122	-				+1.3
3,931,122	-				-0.2
3,931,122	-				-1.3
3,931,122	-				+2.4
3,931,143	-				-5.2
3,931,149	+				-1.2
3,931,150	-				+0.5
3,931,150	-				+0.1
3,931,150	-				-1.6
3,931,175	+				-3.7
3,931,175	+				-3.4
3,931,175	+				-3.1
3,931,175	+				-2.8
3,931,176	-				-3.4
3,931,176	-				-3.5
3,931,184	+				-2.8
3,931,184	+				-2.4
3,931,184	+				-0.1
3,931,184	+				-1.0
3,931,184	+				-4.0
3,931,184	+				-2.8
3,931,184	+				-2.0
3,931,185	-				-4.7
3,931,185	-				-1.3
3,931,185	-				-2.9
3,931,188	+				-4.1
3,931,189	-				-2.5
3,931,189	-				-2.1
3,931,194	+				-2.1
3,931,194	+				-2.9
3,931,194	+				-2.3
3,931,194	+				-0.6
3,931,194	+				-3.4
3,931,194	+				-1.6
3,931,194	+				-1.5
3,931,195	-				-2.2
3,931,195	-				-1.3
3,931,195	-				-3.1
3,931,195	-				-2.4
3,931,195	-				-4.2
3,931,195	-				-4.1
3,931,195	-				-3.6
3,931,195	-				-4.0
3,931,195	-				-3.5
3,931,196	+				-1.3
3,931,196	+				-2.3
3,931,197	-				-3.7
3,931,225	+				+0.1
3,931,225	+				-1.5
3,931,225	+				-3.0
3,931,226	-				-1.6
3,931,226	-				-2.4
3,931,289	+		IAI47_18480	0.13	-2.3
3,931,289	+		IAI47_18480	0.13	-1.9
3,931,289	+		IAI47_18480	0.13	-1.4
3,931,289	+		IAI47_18480	0.13	-2.8
3,931,290	-		IAI47_18480	0.13	-2.9
3,931,290	-		IAI47_18480	0.13	-3.3
3,931,290	-		IAI47_18480	0.13	-5.9
3,931,334	+		IAI47_18480	0.17	-0.9
3,931,334	+		IAI47_18480	0.17	-1.7
3,931,334	+		IAI47_18480	0.17	-0.9
3,931,560	+		IAI47_18480	0.35	-3.1
3,931,576	-		IAI47_18480	0.36	-3.1
3,931,582	+		IAI47_18480	0.36	-2.0
3,931,582	+		IAI47_18480	0.36	-1.0
3,931,582	+		IAI47_18480	0.36	-3.6
3,931,582	+		IAI47_18480	0.36	-1.3
3,931,583	-		IAI47_18480	0.37	-4.2
3,931,586	+		IAI47_18480	0.37	-2.3
3,931,586	+		IAI47_18480	0.37	-3.6
3,931,587	-		IAI47_18480	0.37	-5.1
3,931,587	-		IAI47_18480	0.37	-3.8
3,931,587	-		IAI47_18480	0.37	-1.7
3,931,599	+		IAI47_18480	0.38	-0.2
3,931,624	+		IAI47_18480	0.40	-2.2
3,931,625	-		IAI47_18480	0.40	-3.8
3,931,659	+		IAI47_18480	0.43	-2.5
3,931,716	+		IAI47_18480	0.47	-1.7
3,931,717	-		IAI47_18480	0.47	-4.0
3,931,717	-		IAI47_18480	0.47	-2.1
3,931,717	-		IAI47_18480	0.47	-4.1
3,931,718	+		IAI47_18480	0.47	-2.4
3,931,718	+		IAI47_18480	0.47	-1.1
3,931,718	+		IAI47_18480	0.47	-3.2
3,931,719	-		IAI47_18480	0.47	-2.4
3,931,719	-		IAI47_18480	0.47	-1.9
3,931,732	-		IAI47_18480	0.48	-2.7
3,931,862	+		IAI47_18480	0.59	-2.2
3,931,974	+		IAI47_18480	0.68	-2.2
3,931,974	+		IAI47_18480	0.68	-2.8
3,931,975	-		IAI47_18480	0.68	-2.3
3,932,033	+		IAI47_18480	0.73	-1.6
3,932,121	+		IAI47_18480	0.80	-1.9
3,932,122	-		IAI47_18480	0.80	-2.5