Strain Fitness in Pantoea sp. MT58 around IAI47_18465

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,926,965	-				-0.5
3,926,977	-				-0.2
3,926,979	+				-0.1
3,927,036	-				-0.2
3,927,152	+				-0.5
3,927,152	+				-0.1
3,927,152	+				-1.5
3,927,185	+				-1.8
3,927,185	+				+0.7
3,927,272	+				-0.9
3,927,272	+				-2.2
3,927,272	+				+3.5
3,927,272	+				-1.7
3,927,273	-				+1.1
3,927,273	-				-0.5
3,927,273	-				-1.1
3,927,273	-				-1.9
3,927,510	+		IAI47_18450	0.76	+0.1
3,927,879	-				-2.9
3,927,879	-				-0.2
3,927,905	-				+0.2
3,927,905	-				+0.3
3,927,905	-				+0.7
3,927,945	+				-0.4
3,927,945	+				+0.9
3,927,945	+				+1.0
3,927,946	-				+0.1
3,927,954	+				-0.2
3,927,954	+				-1.7
3,927,955	-				+0.6
3,927,955	-				-1.0
3,927,955	-				-2.8
3,927,955	-				-0.5
3,927,978	+				-0.1
3,927,987	+				+1.1
3,927,987	+				-0.6
3,927,987	+				+0.1
3,927,988	-				-1.9
3,927,992	-				-0.3
3,927,992	-				-2.2
3,928,001	+				-2.3
3,928,002	-				+0.4
3,928,041	+		IAI47_18465	0.11	+1.2
3,928,041	+		IAI47_18465	0.11	-2.7
3,928,042	-		IAI47_18465	0.12	-0.4
3,928,042	-		IAI47_18465	0.12	-1.4
3,928,110	+		IAI47_18465	0.21	-1.4
3,928,110	+		IAI47_18465	0.21	-1.4
3,928,110	+		IAI47_18465	0.21	-2.3
3,928,110	+		IAI47_18465	0.21	-1.9
3,928,110	+		IAI47_18465	0.21	-1.9
3,928,111	-		IAI47_18465	0.21	-1.5
3,928,111	-		IAI47_18465	0.21	-2.2
3,928,111	-		IAI47_18465	0.21	+2.0
3,928,111	-		IAI47_18465	0.21	-0.5
3,928,111	-		IAI47_18465	0.21	+0.3
3,928,111	-		IAI47_18465	0.21	+0.7
3,928,111	-		IAI47_18465	0.21	-2.6
3,928,111	-		IAI47_18465	0.21	+2.1
3,928,121	+		IAI47_18465	0.22	-0.1
3,928,131	+		IAI47_18465	0.24	+0.8
3,928,131	+		IAI47_18465	0.24	-0.7
3,928,131	+		IAI47_18465	0.24	+1.1
3,928,132	-		IAI47_18465	0.24	-1.4
3,928,132	-		IAI47_18465	0.24	+0.8
3,928,132	-		IAI47_18465	0.24	-0.2
3,928,132	-		IAI47_18465	0.24	-1.1
3,928,132	-		IAI47_18465	0.24	-2.5
3,928,132	-		IAI47_18465	0.24	+0.3
3,928,132	-		IAI47_18465	0.24	-0.2
3,928,132	-		IAI47_18465	0.24	+1.1
3,928,132	-		IAI47_18465	0.24	-0.2
3,928,199	+		IAI47_18465	0.33	+0.7
3,928,199	+		IAI47_18465	0.33	-0.1
3,928,199	+		IAI47_18465	0.33	-1.4
3,928,200	-		IAI47_18465	0.33	-1.9
3,928,200	-		IAI47_18465	0.33	-1.2
3,928,270	-		IAI47_18465	0.42	-1.2
3,928,270	-		IAI47_18465	0.42	+2.0
3,928,270	-		IAI47_18465	0.42	+0.7
3,928,270	-		IAI47_18465	0.42	-1.3
3,928,291	+		IAI47_18465	0.45	+1.2
3,928,291	+		IAI47_18465	0.45	+1.0
3,928,291	+		IAI47_18465	0.45	-1.9
3,928,292	-		IAI47_18465	0.45	+0.5
3,928,292	-		IAI47_18465	0.45	-0.2
3,928,292	-		IAI47_18465	0.45	-0.3
3,928,292	-		IAI47_18465	0.45	-2.2
3,928,292	-		IAI47_18465	0.45	-2.1
3,928,292	-		IAI47_18465	0.45	-0.1
3,928,292	-		IAI47_18465	0.45	-1.2
3,928,318	+		IAI47_18465	0.49	-0.0
3,928,318	+		IAI47_18465	0.49	+0.7
3,928,318	+		IAI47_18465	0.49	-1.0
3,928,318	+		IAI47_18465	0.49	-0.0
3,928,319	-		IAI47_18465	0.49	+0.7
3,928,319	-		IAI47_18465	0.49	-2.0
3,928,409	+		IAI47_18465	0.61	-0.5
3,928,410	-		IAI47_18465	0.61	-1.8
3,928,457	-		IAI47_18465	0.68	+1.5
3,928,474	+		IAI47_18465	0.70	+2.0
3,928,474	+		IAI47_18465	0.70	+0.3
3,928,474	+		IAI47_18465	0.70	-0.5
3,928,475	-		IAI47_18465	0.70	+2.2
3,928,475	-		IAI47_18465	0.70	-2.4
3,928,475	-		IAI47_18465	0.70	-1.0
3,928,475	-		IAI47_18465	0.70	-0.7
3,928,491	+		IAI47_18465	0.72	-0.6
3,928,491	+		IAI47_18465	0.72	+0.3
3,928,491	+		IAI47_18465	0.72	-0.2
3,928,491	+		IAI47_18465	0.72	+2.1
3,928,491	+		IAI47_18465	0.72	-2.5
3,928,491	+		IAI47_18465	0.72	-3.2
3,928,491	+		IAI47_18465	0.72	+0.3
3,928,492	-		IAI47_18465	0.72	-1.4
3,928,492	-		IAI47_18465	0.72	-0.5
3,928,492	-		IAI47_18465	0.72	-1.3
3,928,492	-		IAI47_18465	0.72	-1.3
3,928,498	-		IAI47_18465	0.73	+0.1
3,928,498	-		IAI47_18465	0.73	-1.7
3,928,512	-		IAI47_18465	0.75	+0.2
3,928,523	+		IAI47_18465	0.77	-1.8
3,928,523	+		IAI47_18465	0.77	-0.3
3,928,524	-		IAI47_18465	0.77	+0.6
3,928,579	+		IAI47_18465	0.84	+0.4
3,928,580	-		IAI47_18465	0.84	+0.3
3,928,644	+				-0.2
3,928,644	+				+0.2
3,928,644	+				-2.0
3,928,644	+				-0.0
3,928,645	-				+0.1
3,928,645	-				-0.0
3,928,645	-				-2.1
3,928,645	-				-0.3
3,928,685	+				+1.8
3,928,685	+				-1.4
3,928,686	-				-0.6
3,928,686	-				-0.2
3,928,686	-				-1.2
3,928,696	+				-0.4
3,928,696	+				-2.0
3,928,697	-				+1.1
3,928,697	-				-0.7
3,928,697	-				+0.9
3,928,697	-				+0.7
3,928,697	-				+1.0
3,928,697	-				+2.4
3,928,720	-				-0.3
3,928,782	+				-0.6
3,928,794	+				+0.5
3,928,794	+				+1.2
3,928,795	-				+1.3
3,928,795	-				-0.9
3,928,799	+				-0.7
3,928,799	+				-1.1
3,928,799	+				-0.1
3,928,799	+				-2.4
3,928,799	+				-0.9
3,928,799	+				-1.7
3,928,800	-				-1.5
3,928,800	-				-0.8
3,928,800	-				-2.6
3,928,800	-				-1.4
3,928,800	-				-3.8
3,928,800	-				+0.5
3,928,800	-				-0.7
3,928,800	-				-4.0
3,928,800	-				-4.2
3,928,800	-				-0.6
3,928,803	+				-4.4
3,928,803	+				-2.6
3,928,803	+				-2.5
3,928,803	+				+0.2
3,928,804	-				-1.7
3,928,892	+		IAI47_18470	0.13	-1.6
3,928,892	+		IAI47_18470	0.13	-2.6
3,928,892	+		IAI47_18470	0.13	+0.4
3,928,893	-		IAI47_18470	0.13	-2.1
3,928,896	+		IAI47_18470	0.13	-1.7
3,928,897	-		IAI47_18470	0.13	-3.0
3,928,966	+		IAI47_18470	0.18	-1.0
3,928,966	+		IAI47_18470	0.18	-4.2
3,928,967	-		IAI47_18470	0.18	-2.9
3,928,967	-		IAI47_18470	0.18	-4.4
3,928,989	-		IAI47_18470	0.20	-4.2
3,928,989	-		IAI47_18470	0.20	-4.3
3,929,058	+		IAI47_18470	0.25	-2.3
3,929,058	+		IAI47_18470	0.25	-2.2
3,929,058	+		IAI47_18470	0.25	-4.4
3,929,058	+		IAI47_18470	0.25	-2.3
3,929,059	-		IAI47_18470	0.25	-1.7
3,929,059	-		IAI47_18470	0.25	-2.8
3,929,059	-		IAI47_18470	0.25	-2.9
3,929,090	+		IAI47_18470	0.27	-1.7
3,929,113	+		IAI47_18470	0.29	-2.9
3,929,113	+		IAI47_18470	0.29	-2.4
3,929,113	+		IAI47_18470	0.29	-3.7
3,929,113	+		IAI47_18470	0.29	-0.6
3,929,113	+		IAI47_18470	0.29	-3.2
3,929,113	+		IAI47_18470	0.29	-1.6
3,929,113	+		IAI47_18470	0.29	-3.7
3,929,113	+		IAI47_18470	0.29	-2.6
3,929,114	-		IAI47_18470	0.29	-2.7
3,929,114	-		IAI47_18470	0.29	-2.2
3,929,114	-		IAI47_18470	0.29	-4.1
3,929,128	-		IAI47_18470	0.30	-2.8
3,929,128	-		IAI47_18470	0.30	-1.1
3,929,128	-		IAI47_18470	0.30	-1.6
3,929,224	+		IAI47_18470	0.37	-3.7
3,929,224	+		IAI47_18470	0.37	-3.6
3,929,224	+		IAI47_18470	0.37	-3.1
3,929,224	+		IAI47_18470	0.37	-2.3
3,929,224	+		IAI47_18470	0.37	+0.2
3,929,224	+		IAI47_18470	0.37	-1.2
3,929,224	+		IAI47_18470	0.37	-0.9
3,929,225	-		IAI47_18470	0.37	-2.3
3,929,225	-		IAI47_18470	0.37	-3.7
3,929,225	-		IAI47_18470	0.37	-3.2
3,929,225	-		IAI47_18470	0.37	-2.1
3,929,267	+		IAI47_18470	0.41	-2.3
3,929,267	+		IAI47_18470	0.41	-2.6
3,929,267	+		IAI47_18470	0.41	-2.9
3,929,267	+		IAI47_18470	0.41	-3.2
3,929,268	-		IAI47_18470	0.41	-2.5
3,929,268	-		IAI47_18470	0.41	-3.5
3,929,268	-		IAI47_18470	0.41	-3.5
3,929,268	-		IAI47_18470	0.41	-3.6
3,929,268	-		IAI47_18470	0.41	+0.1
3,929,281	+		IAI47_18470	0.42	-0.5
3,929,281	+		IAI47_18470	0.42	-2.7
3,929,281	+		IAI47_18470	0.42	-3.4
3,929,281	+		IAI47_18470	0.42	-1.7
3,929,282	-		IAI47_18470	0.42	-2.5
3,929,282	-		IAI47_18470	0.42	-1.5
3,929,291	+		IAI47_18470	0.42	+0.3
3,929,291	+		IAI47_18470	0.42	-0.1
3,929,291	+		IAI47_18470	0.42	-1.4
3,929,291	+		IAI47_18470	0.42	+0.9
3,929,292	-		IAI47_18470	0.42	-3.2
3,929,313	+		IAI47_18470	0.44	-3.8
3,929,313	+		IAI47_18470	0.44	-2.4
3,929,313	+		IAI47_18470	0.44	-1.4
3,929,313	+		IAI47_18470	0.44	-1.6
3,929,314	-		IAI47_18470	0.44	-2.8
3,929,314	-		IAI47_18470	0.44	-2.0
3,929,326	+		IAI47_18470	0.45	-3.1
3,929,326	+		IAI47_18470	0.45	-3.3
3,929,327	-		IAI47_18470	0.45	-1.2
3,929,327	-		IAI47_18470	0.45	-5.0
3,929,327	-		IAI47_18470	0.45	-4.0
3,929,327	-		IAI47_18470	0.45	-2.5
3,929,368	-		IAI47_18470	0.48	-2.1
3,929,444	+		IAI47_18470	0.54	-1.9
3,929,444	+		IAI47_18470	0.54	-1.9
3,929,444	+		IAI47_18470	0.54	+0.1
3,929,444	+		IAI47_18470	0.54	-3.7
3,929,444	+		IAI47_18470	0.54	-1.6
3,929,445	-		IAI47_18470	0.54	-4.0
3,929,445	-		IAI47_18470	0.54	-2.9
3,929,445	-		IAI47_18470	0.54	-3.4
3,929,450	+		IAI47_18470	0.54	-3.5
3,929,451	-		IAI47_18470	0.54	-3.9
3,929,479	+		IAI47_18470	0.56	-1.9
3,929,479	+		IAI47_18470	0.56	-0.9
3,929,479	+		IAI47_18470	0.56	-1.5
3,929,479	+		IAI47_18470	0.56	-0.7
3,929,480	-		IAI47_18470	0.56	-3.0
3,929,480	-		IAI47_18470	0.56	-3.3
3,929,480	-		IAI47_18470	0.56	-2.3
3,929,480	-		IAI47_18470	0.56	-2.0
3,929,574	-		IAI47_18470	0.63	-1.8
3,929,578	-		IAI47_18470	0.64	-2.0
3,929,582	-		IAI47_18470	0.64	-0.2
3,929,582	-		IAI47_18470	0.64	-1.3
3,929,582	-		IAI47_18470	0.64	-2.4
3,929,582	-		IAI47_18470	0.64	-1.5
3,929,582	-		IAI47_18470	0.64	-2.3
3,929,634	-		IAI47_18470	0.68	-3.1
3,929,635	+		IAI47_18470	0.68	-1.3
3,929,635	+		IAI47_18470	0.68	+1.5
3,929,635	+		IAI47_18470	0.68	+0.4
3,929,635	+		IAI47_18470	0.68	-0.6
3,929,635	+		IAI47_18470	0.68	-1.7
3,929,636	-		IAI47_18470	0.68	-3.3
3,929,636	-		IAI47_18470	0.68	-1.2
3,929,636	-		IAI47_18470	0.68	-1.3