Strain Fitness in Pantoea sp. MT58 around IAI47_08565

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,810,631	+		IAI47_08560	0.19	-0.3
1,810,631	+		IAI47_08560	0.19	-1.4
1,810,631	+		IAI47_08560	0.19	+0.1
1,810,631	+		IAI47_08560	0.19	+1.1
1,810,632	-		IAI47_08560	0.19	+1.7
1,810,632	-		IAI47_08560	0.19	-0.9
1,810,632	-		IAI47_08560	0.19	-0.3
1,810,632	-		IAI47_08560	0.19	-0.9
1,810,633	+		IAI47_08560	0.19	-1.3
1,810,633	+		IAI47_08560	0.19	+2.4
1,810,634	-		IAI47_08560	0.19	-0.4
1,810,634	-		IAI47_08560	0.19	-0.5
1,810,634	-		IAI47_08560	0.19	+0.0
1,810,634	-		IAI47_08560	0.19	+0.8
1,810,634	-		IAI47_08560	0.19	+0.4
1,810,637	+		IAI47_08560	0.20	-0.2
1,810,637	+		IAI47_08560	0.20	+2.0
1,810,638	-		IAI47_08560	0.20	-1.7
1,810,691	-		IAI47_08560	0.24	+0.7
1,810,691	-		IAI47_08560	0.24	+1.2
1,810,691	-		IAI47_08560	0.24	-0.2
1,810,691	-		IAI47_08560	0.24	+1.2
1,810,691	-		IAI47_08560	0.24	+1.1
1,810,691	-		IAI47_08560	0.24	+0.7
1,810,693	+		IAI47_08560	0.24	-0.8
1,810,693	+		IAI47_08560	0.24	-1.8
1,810,693	+		IAI47_08560	0.24	-0.2
1,810,693	+		IAI47_08560	0.24	+1.0
1,810,694	-		IAI47_08560	0.24	+1.2
1,810,694	-		IAI47_08560	0.24	+0.1
1,810,694	-		IAI47_08560	0.24	+1.9
1,810,694	-		IAI47_08560	0.24	-0.3
1,810,694	-		IAI47_08560	0.24	+0.3
1,810,694	-		IAI47_08560	0.24	-0.6
1,810,694	-		IAI47_08560	0.24	-0.6
1,810,694	-		IAI47_08560	0.24	+1.7
1,810,694	-		IAI47_08560	0.24	-1.9
1,810,694	-		IAI47_08560	0.24	+1.4
1,810,695	+		IAI47_08560	0.24	+0.3
1,810,695	+		IAI47_08560	0.24	-0.4
1,810,695	+		IAI47_08560	0.24	+0.2
1,810,695	+		IAI47_08560	0.24	-0.1
1,810,696	-		IAI47_08560	0.24	-1.5
1,810,696	-		IAI47_08560	0.24	+1.6
1,810,696	-		IAI47_08560	0.24	+4.0
1,810,729	+		IAI47_08560	0.27	+2.6
1,810,729	+		IAI47_08560	0.27	-2.5
1,810,730	-		IAI47_08560	0.27	+1.4
1,810,730	-		IAI47_08560	0.27	-1.6
1,810,735	+		IAI47_08560	0.28	+0.8
1,810,735	+		IAI47_08560	0.28	-1.1
1,810,735	+		IAI47_08560	0.28	+1.8
1,810,736	-		IAI47_08560	0.28	-0.5
1,810,766	-		IAI47_08560	0.30	-0.6
1,810,772	+		IAI47_08560	0.31	-1.5
1,810,783	-		IAI47_08560	0.32	-0.6
1,810,817	+		IAI47_08560	0.34	+1.6
1,810,857	+		IAI47_08560	0.38	+1.8
1,810,857	+		IAI47_08560	0.38	-0.7
1,810,857	+		IAI47_08560	0.38	-1.4
1,810,858	-		IAI47_08560	0.38	+0.2
1,810,858	-		IAI47_08560	0.38	-1.3
1,810,858	-		IAI47_08560	0.38	+1.8
1,810,858	-		IAI47_08560	0.38	+0.5
1,810,858	-		IAI47_08560	0.38	-2.2
1,810,858	-		IAI47_08560	0.38	-0.4
1,810,878	+		IAI47_08560	0.39	+2.7
1,810,878	+		IAI47_08560	0.39	-1.1
1,810,879	-		IAI47_08560	0.39	+0.1
1,810,879	-		IAI47_08560	0.39	+0.9
1,810,885	-		IAI47_08560	0.40	-0.9
1,810,947	+		IAI47_08560	0.45	+2.4
1,810,947	+		IAI47_08560	0.45	-2.1
1,810,948	-		IAI47_08560	0.45	-0.1
1,810,948	-		IAI47_08560	0.45	+1.3
1,810,948	-		IAI47_08560	0.45	-2.1
1,810,951	+		IAI47_08560	0.45	+0.3
1,810,951	+		IAI47_08560	0.45	+2.7
1,810,951	+		IAI47_08560	0.45	-0.0
1,810,952	-		IAI47_08560	0.45	-2.1
1,810,952	-		IAI47_08560	0.45	+0.6
1,810,952	-		IAI47_08560	0.45	+1.4
1,810,952	-		IAI47_08560	0.45	+0.7
1,811,066	+		IAI47_08560	0.55	-0.0
1,811,066	+		IAI47_08560	0.55	-0.6
1,811,081	+		IAI47_08560	0.56	-1.1
1,811,081	+		IAI47_08560	0.56	-1.1
1,811,142	+		IAI47_08560	0.61	+1.1
1,811,143	-		IAI47_08560	0.61	-0.4
1,811,143	-		IAI47_08560	0.61	-0.0
1,811,175	+		IAI47_08560	0.63	-2.2
1,811,175	+		IAI47_08560	0.63	+1.8
1,811,176	-		IAI47_08560	0.63	-1.1
1,811,176	-		IAI47_08560	0.63	+0.8
1,811,176	-		IAI47_08560	0.63	+0.8
1,811,176	-		IAI47_08560	0.63	-1.8
1,811,179	+		IAI47_08560	0.64	+0.4
1,811,179	+		IAI47_08560	0.64	+2.1
1,811,179	+		IAI47_08560	0.64	+0.1
1,811,179	+		IAI47_08560	0.64	+0.4
1,811,180	-		IAI47_08560	0.64	-0.4
1,811,180	-		IAI47_08560	0.64	-1.2
1,811,180	-		IAI47_08560	0.64	+1.4
1,811,180	-		IAI47_08560	0.64	+0.0
1,811,180	-		IAI47_08560	0.64	-1.5
1,811,180	-		IAI47_08560	0.64	+0.1
1,811,244	-		IAI47_08560	0.69	-1.7
1,811,298	+		IAI47_08560	0.73	+0.1
1,811,298	+		IAI47_08560	0.73	+0.8
1,811,298	+		IAI47_08560	0.73	+1.8
1,811,298	+		IAI47_08560	0.73	+0.4
1,811,298	+		IAI47_08560	0.73	-1.8
1,811,298	+		IAI47_08560	0.73	+0.2
1,811,298	+		IAI47_08560	0.73	+0.7
1,811,299	-		IAI47_08560	0.73	-0.9
1,811,299	-		IAI47_08560	0.73	-1.9
1,811,299	-		IAI47_08560	0.73	+0.5
1,811,299	-		IAI47_08560	0.73	+0.1
1,811,299	-		IAI47_08560	0.73	+1.6
1,811,315	-		IAI47_08560	0.75	-0.9
1,811,315	-		IAI47_08560	0.75	-0.8
1,811,315	-		IAI47_08560	0.75	+2.6
1,811,315	-		IAI47_08560	0.75	+0.9
1,811,346	+		IAI47_08560	0.77	-0.9
1,811,347	-		IAI47_08560	0.77	+0.9
1,811,347	-		IAI47_08560	0.77	-0.7
1,811,347	-		IAI47_08560	0.77	-0.6
1,811,582	-				-1.1
1,811,582	-				+0.5
1,811,582	-				+1.1
1,811,649	+				+1.9
1,811,649	+				+0.3
1,811,650	-				+4.1
1,811,650	-				+1.0
1,811,650	-				+0.6
1,811,650	-				+0.9
1,811,694	+		IAI47_08565	0.12	+0.5
1,811,694	+		IAI47_08565	0.12	-0.1
1,811,695	-		IAI47_08565	0.12	+1.9
1,811,695	-		IAI47_08565	0.12	+1.0
1,811,707	-		IAI47_08565	0.14	+1.2
1,811,708	+		IAI47_08565	0.14	+1.9
1,811,709	-		IAI47_08565	0.14	+1.3
1,811,709	-		IAI47_08565	0.14	+1.3
1,811,709	-		IAI47_08565	0.14	+0.2
1,811,709	-		IAI47_08565	0.14	-0.9
1,811,714	+		IAI47_08565	0.15	+1.4
1,811,739	-		IAI47_08565	0.19	-0.8
1,811,739	-		IAI47_08565	0.19	+0.1
1,811,785	-		IAI47_08565	0.27	+3.3
1,811,785	-		IAI47_08565	0.27	+0.2
1,811,785	-		IAI47_08565	0.27	-0.6
1,811,847	+		IAI47_08565	0.37	+1.6
1,811,849	+		IAI47_08565	0.37	+0.9
1,811,849	+		IAI47_08565	0.37	+0.7
1,811,849	+		IAI47_08565	0.37	+0.3
1,811,849	+		IAI47_08565	0.37	-0.7
1,811,949	-		IAI47_08565	0.54	+3.3
1,811,949	-		IAI47_08565	0.54	+0.4
1,811,949	-		IAI47_08565	0.54	-2.0
1,811,974	+		IAI47_08565	0.58	+0.1
1,811,975	-		IAI47_08565	0.58	-0.9
1,811,976	+		IAI47_08565	0.58	+0.1
1,811,977	-		IAI47_08565	0.58	+2.2
1,812,008	+		IAI47_08565	0.63	-0.3
1,812,008	+		IAI47_08565	0.63	+1.8
1,812,009	-		IAI47_08565	0.63	+1.3
1,812,009	-		IAI47_08565	0.63	+0.2
1,812,009	-		IAI47_08565	0.63	+0.8
1,812,092	+		IAI47_08565	0.77	-1.0
1,812,092	+		IAI47_08565	0.77	-1.0
1,812,130	+		IAI47_08565	0.83	-0.9
1,812,130	+		IAI47_08565	0.83	+1.5
1,812,157	-		IAI47_08565	0.88	+0.6
1,812,268	-				+1.4
1,812,313	+		IAI47_08570	0.20	+2.9
1,812,354	+		IAI47_08570	0.29	+2.6
1,812,355	-		IAI47_08570	0.29	+0.8
1,812,468	+		IAI47_08570	0.55	+0.8
1,812,468	+		IAI47_08570	0.55	-0.9
1,812,468	+		IAI47_08570	0.55	+2.3
1,812,468	+		IAI47_08570	0.55	-0.2
1,812,468	+		IAI47_08570	0.55	+0.6
1,812,468	+		IAI47_08570	0.55	+1.5
1,812,469	-		IAI47_08570	0.55	-0.3
1,812,469	-		IAI47_08570	0.55	-0.6
1,812,469	-		IAI47_08570	0.55	+1.3
1,812,469	-		IAI47_08570	0.55	+0.5
1,812,469	-		IAI47_08570	0.55	-0.3
1,812,489	+		IAI47_08570	0.59	+0.5
1,812,489	+		IAI47_08570	0.59	+2.2
1,812,490	-		IAI47_08570	0.60	+1.3
1,812,490	-		IAI47_08570	0.60	-0.4
1,812,493	+		IAI47_08570	0.60	-0.4
1,812,493	+		IAI47_08570	0.60	-1.5
1,812,493	+		IAI47_08570	0.60	-1.9
1,812,493	+		IAI47_08570	0.60	+0.6
1,812,493	+		IAI47_08570	0.60	-1.0
1,812,494	-		IAI47_08570	0.60	+0.8
1,812,494	-		IAI47_08570	0.60	+0.6
1,812,628	+				+1.2
1,812,629	-				-0.4
1,812,732	+				-0.4
1,812,732	+				-1.1
1,812,732	+				-0.9
1,812,732	+				+0.8
1,812,732	+				-0.8
1,812,732	+				-0.6
1,812,732	+				+1.7
1,812,733	-				+2.4
1,812,753	-		IAI47_08575	0.10	+0.6
1,812,756	+		IAI47_08575	0.10	+0.5
1,812,757	-		IAI47_08575	0.11	-0.5
1,812,836	+		IAI47_08575	0.19	+2.8
1,812,874	+		IAI47_08575	0.24	+3.4
1,812,874	+		IAI47_08575	0.24	+0.1
1,812,875	-		IAI47_08575	0.24	+1.5
1,812,951	-		IAI47_08575	0.32	+0.0
1,813,069	+		IAI47_08575	0.45	+3.1
1,813,070	-		IAI47_08575	0.45	-2.0
1,813,115	+		IAI47_08575	0.51	-0.2
1,813,116	-		IAI47_08575	0.51	-2.1
1,813,116	-		IAI47_08575	0.51	-1.1
1,813,116	-		IAI47_08575	0.51	+1.4
1,813,118	+		IAI47_08575	0.51	+1.3
1,813,118	+		IAI47_08575	0.51	-2.3
1,813,151	+		IAI47_08575	0.55	+1.0
1,813,151	+		IAI47_08575	0.55	-0.4
1,813,151	+		IAI47_08575	0.55	-0.5
1,813,151	+		IAI47_08575	0.55	+0.5
1,813,151	+		IAI47_08575	0.55	-1.9
1,813,151	+		IAI47_08575	0.55	-0.9
1,813,151	+		IAI47_08575	0.55	-0.8
1,813,151	+		IAI47_08575	0.55	+0.4
1,813,151	+		IAI47_08575	0.55	+1.6
1,813,151	+		IAI47_08575	0.55	+1.0
1,813,151	+		IAI47_08575	0.55	-0.9
1,813,152	-		IAI47_08575	0.55	+0.8
1,813,152	-		IAI47_08575	0.55	+1.0
1,813,152	-		IAI47_08575	0.55	-0.9
1,813,152	-		IAI47_08575	0.55	+0.7
1,813,152	-		IAI47_08575	0.55	-2.4
1,813,152	-		IAI47_08575	0.55	+1.1
1,813,152	-		IAI47_08575	0.55	+1.5
1,813,152	-		IAI47_08575	0.55	+0.4
1,813,153	+		IAI47_08575	0.55	-1.8
1,813,153	+		IAI47_08575	0.55	-1.1
1,813,153	+		IAI47_08575	0.55	-0.2
1,813,153	+		IAI47_08575	0.55	-0.2
1,813,154	-		IAI47_08575	0.55	+0.3
1,813,154	-		IAI47_08575	0.55	+0.4
1,813,154	-		IAI47_08575	0.55	+0.0
1,813,204	+		IAI47_08575	0.60	+1.4
1,813,205	-		IAI47_08575	0.61	+1.0