Strain Fitness in Pantoea sp. MT58 around IAI47_08315

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,759,358	+		IAI47_08310	0.56	-0.6
1,759,551	+		IAI47_08310	0.68	+1.0
1,759,552	-		IAI47_08310	0.68	+0.6
1,759,743	+		IAI47_08310	0.79	+1.5
1,759,962	+				+0.2
1,759,962	+				+0.4
1,759,963	-				-0.1
1,759,963	-				-0.7
1,760,142	+				-0.3
1,760,142	+				+2.0
1,760,176	+				-0.1
1,760,177	-				-0.2
1,760,220	-				-0.3
1,760,223	+				-0.5
1,760,223	+				+0.4
1,760,223	+				+0.5
1,760,224	-				+1.3
1,760,224	-				+1.2
1,760,244	-				-0.5
1,760,245	+				-0.2
1,760,245	+				-0.4
1,760,259	+				-0.9
1,760,260	-				+0.1
1,760,260	-				-0.3
1,760,314	-				+0.6
1,760,323	-				+1.1
1,760,349	+				+3.0
1,760,350	-				-0.4
1,760,350	-				+0.5
1,760,380	+				+0.6
1,760,380	+				+1.9
1,760,381	-				-1.9
1,760,384	-				-1.8
1,760,419	+				+0.1
1,760,420	-				+1.0
1,760,420	-				-2.1
1,760,420	-				+0.8
1,760,425	+				-1.7
1,760,426	-				+0.0
1,760,431	+				-1.1
1,760,431	+				-1.0
1,760,450	+		IAI47_08315	0.11	-0.8
1,760,450	+		IAI47_08315	0.11	-2.0
1,760,450	+		IAI47_08315	0.11	-0.2
1,760,451	-		IAI47_08315	0.11	-1.4
1,760,451	-		IAI47_08315	0.11	-0.6
1,760,451	-		IAI47_08315	0.11	+0.5
1,760,452	+		IAI47_08315	0.11	-0.2
1,760,452	+		IAI47_08315	0.11	-0.4
1,760,453	-		IAI47_08315	0.11	-0.4
1,760,453	-		IAI47_08315	0.11	-0.9
1,760,453	-		IAI47_08315	0.11	+1.2
1,760,461	-		IAI47_08315	0.11	+0.8
1,760,461	-		IAI47_08315	0.11	-0.3
1,760,473	+		IAI47_08315	0.12	+0.1
1,760,474	-		IAI47_08315	0.12	-0.3
1,760,551	+		IAI47_08315	0.17	-0.9
1,760,551	+		IAI47_08315	0.17	+0.9
1,760,552	-		IAI47_08315	0.17	-2.4
1,760,552	-		IAI47_08315	0.17	-0.7
1,760,552	-		IAI47_08315	0.17	+0.2
1,760,552	-		IAI47_08315	0.17	-2.1
1,760,552	-		IAI47_08315	0.17	-0.1
1,760,552	-		IAI47_08315	0.17	-0.9
1,760,574	+		IAI47_08315	0.19	-0.4
1,760,575	-		IAI47_08315	0.19	-0.5
1,760,603	+		IAI47_08315	0.21	-1.4
1,760,603	+		IAI47_08315	0.21	-1.6
1,760,604	-		IAI47_08315	0.21	+0.3
1,760,604	-		IAI47_08315	0.21	-0.1
1,760,606	+		IAI47_08315	0.21	+0.5
1,760,607	-		IAI47_08315	0.21	-1.4
1,760,607	-		IAI47_08315	0.21	-1.5
1,760,667	-		IAI47_08315	0.25	-0.8
1,760,667	-		IAI47_08315	0.25	-0.6
1,760,675	+		IAI47_08315	0.25	+0.6
1,760,676	-		IAI47_08315	0.25	-0.2
1,760,676	-		IAI47_08315	0.25	+0.1
1,760,700	+		IAI47_08315	0.27	-1.4
1,760,701	-		IAI47_08315	0.27	+0.3
1,760,780	+		IAI47_08315	0.32	-0.6
1,760,780	+		IAI47_08315	0.32	-0.5
1,760,780	+		IAI47_08315	0.32	-0.4
1,760,781	-		IAI47_08315	0.32	+1.8
1,760,781	-		IAI47_08315	0.32	-1.1
1,760,781	-		IAI47_08315	0.32	-1.3
1,760,785	+		IAI47_08315	0.32	+1.0
1,760,785	+		IAI47_08315	0.32	+1.2
1,760,785	+		IAI47_08315	0.32	-1.5
1,760,786	-		IAI47_08315	0.32	-0.6
1,760,786	-		IAI47_08315	0.32	+0.1
1,760,846	+		IAI47_08315	0.36	+2.0
1,760,846	+		IAI47_08315	0.36	+0.2
1,760,890	-		IAI47_08315	0.39	-0.9
1,760,902	+		IAI47_08315	0.40	-0.8
1,760,902	+		IAI47_08315	0.40	-0.8
1,760,903	-		IAI47_08315	0.40	-0.7
1,760,903	-		IAI47_08315	0.40	-0.7
1,760,903	-		IAI47_08315	0.40	+0.4
1,760,905	+		IAI47_08315	0.40	+1.5
1,760,905	+		IAI47_08315	0.40	-0.2
1,760,905	+		IAI47_08315	0.40	+0.1
1,760,905	+		IAI47_08315	0.40	+1.8
1,760,905	+		IAI47_08315	0.40	+1.4
1,760,906	-		IAI47_08315	0.40	+2.5
1,760,906	-		IAI47_08315	0.40	-1.4
1,761,001	+		IAI47_08315	0.46	-2.6
1,761,001	+		IAI47_08315	0.46	+0.5
1,761,001	+		IAI47_08315	0.46	-0.1
1,761,001	+		IAI47_08315	0.46	+0.8
1,761,002	-		IAI47_08315	0.46	-2.4
1,761,002	-		IAI47_08315	0.46	+0.5
1,761,002	-		IAI47_08315	0.46	+0.8
1,761,002	-		IAI47_08315	0.46	-1.1
1,761,085	+		IAI47_08315	0.51	-0.4
1,761,086	-		IAI47_08315	0.51	+0.5
1,761,406	+		IAI47_08315	0.72	+0.8
1,761,406	+		IAI47_08315	0.72	+0.1
1,761,406	+		IAI47_08315	0.72	-1.9
1,761,406	+		IAI47_08315	0.72	+0.6
1,761,407	-		IAI47_08315	0.72	-2.9
1,761,407	-		IAI47_08315	0.72	-1.0
1,761,407	-		IAI47_08315	0.72	-2.0
1,761,407	-		IAI47_08315	0.72	-1.7
1,761,409	+		IAI47_08315	0.72	-0.2
1,761,410	-		IAI47_08315	0.72	+0.9
1,761,410	-		IAI47_08315	0.72	-0.8
1,761,689	-				-1.2
1,761,822	+				-0.5
1,761,823	-				-1.5
1,761,874	+				-1.7
1,761,874	+				-1.2
1,761,875	-				-0.1
1,761,891	+				-0.1
1,761,891	+				-0.1
1,761,892	-				+0.1
1,761,916	-				-1.3
1,761,919	+				-1.5
1,761,919	+				+0.4
1,761,920	-				-2.3
1,761,920	-				-0.7
1,761,920	-				+0.3
1,761,949	+				+0.1
1,761,949	+				+1.5
1,761,949	+				-0.2
1,761,949	+				+0.5
1,761,949	+				+0.5
1,761,949	+				+2.2
1,761,949	+				+0.3
1,761,949	+				+1.9
1,761,950	-				+1.5
1,761,950	-				-0.3
1,761,950	-				-0.8
1,761,950	-				+2.3
1,761,950	-				+0.3
1,761,950	-				-0.4
1,761,950	-				+1.2
1,761,950	-				-1.1
1,761,950	-				-0.3
1,761,950	-				-0.8
1,761,955	+				+0.4
1,761,955	+				-1.0
1,761,955	+				+0.2
1,761,956	-				-0.1
1,761,963	+				+0.4
1,762,057	+				+1.1
1,762,073	+				-0.9
1,762,073	+				+0.1
1,762,074	-				-0.8
1,762,074	-				-1.9
1,762,074	-				+1.4
1,762,074	-				-0.4
1,762,075	+				+1.6
1,762,076	-				-0.4
1,762,076	-				-1.9
1,762,076	-				+2.4
1,762,076	-				+0.6
1,762,090	+				+1.4
1,762,090	+				+0.8
1,762,279	+		IAI47_08320	0.20	+0.2
1,762,323	+		IAI47_08320	0.22	+0.0
1,762,324	-		IAI47_08320	0.22	+0.4
1,762,334	+		IAI47_08320	0.23	+0.4
1,762,334	+		IAI47_08320	0.23	+0.7
1,762,334	+		IAI47_08320	0.23	+1.1
1,762,334	+		IAI47_08320	0.23	-0.0
1,762,335	-		IAI47_08320	0.23	+1.1
1,762,335	-		IAI47_08320	0.23	+0.8
1,762,335	-		IAI47_08320	0.23	-1.4
1,762,335	-		IAI47_08320	0.23	+0.1
1,762,335	-		IAI47_08320	0.23	+1.0
1,762,335	-		IAI47_08320	0.23	+0.1
1,762,335	-		IAI47_08320	0.23	-2.4
1,762,335	-		IAI47_08320	0.23	-1.1
1,762,335	-		IAI47_08320	0.23	+1.3
1,762,336	+		IAI47_08320	0.23	+1.5
1,762,336	+		IAI47_08320	0.23	-1.4
1,762,337	-		IAI47_08320	0.23	+2.4
1,762,337	-		IAI47_08320	0.23	+0.4
1,762,343	+		IAI47_08320	0.23	-1.0
1,762,343	+		IAI47_08320	0.23	-0.1
1,762,344	-		IAI47_08320	0.23	+0.7
1,762,414	+		IAI47_08320	0.28	+0.2
1,762,448	+		IAI47_08320	0.30	+1.1
1,762,448	+		IAI47_08320	0.30	+1.6
1,762,449	-		IAI47_08320	0.30	-1.5
1,762,494	+		IAI47_08320	0.32	-1.3
1,762,495	-		IAI47_08320	0.32	+0.6
1,762,495	-		IAI47_08320	0.32	+0.8
1,762,514	+		IAI47_08320	0.34	+0.5
1,762,514	+		IAI47_08320	0.34	+0.4
1,762,525	+		IAI47_08320	0.34	+1.4
1,762,526	-		IAI47_08320	0.34	-0.2
1,762,526	-		IAI47_08320	0.34	+1.4
1,762,537	+		IAI47_08320	0.35	+0.6
1,762,537	+		IAI47_08320	0.35	+1.2
1,762,538	-		IAI47_08320	0.35	+3.8
1,762,538	-		IAI47_08320	0.35	-1.7
1,762,678	+		IAI47_08320	0.43	-1.4
1,762,679	-		IAI47_08320	0.43	-0.6
1,762,679	-		IAI47_08320	0.43	+2.1
1,762,679	-		IAI47_08320	0.43	-1.6
1,762,683	+		IAI47_08320	0.44	+0.5
1,762,684	-		IAI47_08320	0.44	+1.1
1,762,684	-		IAI47_08320	0.44	-1.1
1,762,684	-		IAI47_08320	0.44	+2.1
1,762,744	+		IAI47_08320	0.47	-0.9
1,762,781	+		IAI47_08320	0.50	-1.1
1,762,781	+		IAI47_08320	0.50	-0.6
1,762,781	+		IAI47_08320	0.50	-1.0
1,762,781	+		IAI47_08320	0.50	-1.1
1,762,781	+		IAI47_08320	0.50	+1.2
1,762,781	+		IAI47_08320	0.50	-0.3
1,762,781	+		IAI47_08320	0.50	+1.7
1,762,781	+		IAI47_08320	0.50	-0.6
1,762,781	+		IAI47_08320	0.50	+0.3
1,762,781	+		IAI47_08320	0.50	+1.9
1,762,781	+		IAI47_08320	0.50	-0.4
1,762,782	-		IAI47_08320	0.50	-0.3
1,762,782	-		IAI47_08320	0.50	-0.0
1,762,782	-		IAI47_08320	0.50	+0.8
1,762,782	-		IAI47_08320	0.50	+2.7
1,762,782	-		IAI47_08320	0.50	+2.1
1,762,782	-		IAI47_08320	0.50	+0.9
1,762,782	-		IAI47_08320	0.50	+0.1
1,762,782	-		IAI47_08320	0.50	-0.8
1,762,782	-		IAI47_08320	0.50	+1.1