Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_07265 and IAI47_07270 are separated by 83 nucleotides IAI47_07270 and IAI47_07275 are separated by 162 nucleotides IAI47_07275 and IAI47_07280 are separated by 16 nucleotides
IAI47_07265: IAI47_07265 - FAD-binding protein, at 1,536,176 to 1,537,558
_07265
IAI47_07270: IAI47_07270 - TetR family transcriptional regulator, at 1,537,642 to 1,538,274
_07270
IAI47_07275: IAI47_07275 - DUF2058 domain-containing protein, at 1,538,437 to 1,538,976
_07275
IAI47_07280: IAI47_07280 - RluA family pseudouridine synthase, at 1,538,993 to 1,539,691
_07280
Position (kb) 1538
1539 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1537.513 kb on + strand at 1537.513 kb on + strand at 1537.514 kb on - strand at 1537.514 kb on - strand at 1537.514 kb on - strand at 1537.516 kb on + strand at 1537.516 kb on + strand at 1537.516 kb on + strand at 1537.517 kb on - strand at 1537.571 kb on + strand at 1537.572 kb on - strand at 1537.572 kb on - strand at 1537.572 kb on - strand at 1537.583 kb on + strand at 1537.583 kb on + strand at 1537.584 kb on - strand at 1537.594 kb on + strand at 1537.594 kb on + strand at 1537.595 kb on - strand at 1537.595 kb on - strand at 1537.595 kb on - strand at 1537.595 kb on - strand at 1537.595 kb on - strand at 1537.600 kb on + strand at 1537.600 kb on + strand at 1537.601 kb on - strand at 1537.601 kb on - strand at 1537.606 kb on + strand at 1537.606 kb on + strand at 1537.606 kb on + strand at 1537.606 kb on + strand at 1537.607 kb on - strand at 1537.607 kb on - strand at 1537.607 kb on - strand at 1537.612 kb on - strand at 1537.612 kb on - strand at 1537.612 kb on - strand at 1537.643 kb on + strand at 1537.647 kb on + strand at 1537.647 kb on + strand at 1537.647 kb on + strand at 1537.647 kb on + strand at 1537.648 kb on - strand at 1537.648 kb on - strand at 1537.655 kb on + strand at 1537.656 kb on - strand at 1537.656 kb on - strand at 1537.656 kb on - strand at 1537.656 kb on - strand at 1537.656 kb on - strand at 1537.656 kb on - strand at 1537.656 kb on - strand at 1537.656 kb on - strand at 1537.656 kb on - strand at 1537.656 kb on - strand at 1537.660 kb on + strand at 1537.660 kb on + strand at 1537.661 kb on - strand at 1537.661 kb on - strand at 1537.698 kb on + strand at 1537.699 kb on - strand at 1537.716 kb on + strand, within IAI47_07270 at 1537.716 kb on + strand, within IAI47_07270 at 1537.717 kb on - strand, within IAI47_07270 at 1537.743 kb on + strand, within IAI47_07270 at 1537.743 kb on + strand, within IAI47_07270 at 1537.744 kb on - strand, within IAI47_07270 at 1537.744 kb on - strand, within IAI47_07270 at 1537.746 kb on - strand, within IAI47_07270 at 1537.746 kb on - strand, within IAI47_07270 at 1537.818 kb on + strand, within IAI47_07270 at 1537.818 kb on + strand, within IAI47_07270 at 1537.819 kb on - strand, within IAI47_07270 at 1537.819 kb on - strand, within IAI47_07270 at 1537.819 kb on - strand, within IAI47_07270 at 1537.851 kb on + strand, within IAI47_07270 at 1537.852 kb on - strand, within IAI47_07270 at 1537.852 kb on - strand, within IAI47_07270 at 1537.891 kb on + strand, within IAI47_07270 at 1537.913 kb on + strand, within IAI47_07270 at 1537.913 kb on + strand, within IAI47_07270 at 1537.914 kb on - strand, within IAI47_07270 at 1537.953 kb on + strand, within IAI47_07270 at 1537.976 kb on + strand, within IAI47_07270 at 1537.977 kb on - strand, within IAI47_07270 at 1538.038 kb on - strand, within IAI47_07270 at 1538.059 kb on + strand, within IAI47_07270 at 1538.059 kb on + strand, within IAI47_07270 at 1538.060 kb on - strand, within IAI47_07270 at 1538.060 kb on - strand, within IAI47_07270 at 1538.069 kb on + strand, within IAI47_07270 at 1538.069 kb on + strand, within IAI47_07270 at 1538.070 kb on - strand, within IAI47_07270 at 1538.070 kb on - strand, within IAI47_07270 at 1538.091 kb on + strand, within IAI47_07270 at 1538.091 kb on + strand, within IAI47_07270 at 1538.091 kb on + strand, within IAI47_07270 at 1538.091 kb on + strand, within IAI47_07270 at 1538.091 kb on + strand, within IAI47_07270 at 1538.092 kb on - strand, within IAI47_07270 at 1538.093 kb on + strand, within IAI47_07270 at 1538.093 kb on + strand, within IAI47_07270 at 1538.093 kb on + strand, within IAI47_07270 at 1538.093 kb on + strand, within IAI47_07270 at 1538.093 kb on + strand, within IAI47_07270 at 1538.093 kb on + strand, within IAI47_07270 at 1538.093 kb on + strand, within IAI47_07270 at 1538.093 kb on + strand, within IAI47_07270 at 1538.093 kb on + strand, within IAI47_07270 at 1538.093 kb on + strand, within IAI47_07270 at 1538.094 kb on - strand, within IAI47_07270 at 1538.094 kb on - strand, within IAI47_07270 at 1538.094 kb on - strand, within IAI47_07270 at 1538.094 kb on - strand, within IAI47_07270 at 1538.094 kb on - strand, within IAI47_07270 at 1538.094 kb on - strand, within IAI47_07270 at 1538.094 kb on - strand, within IAI47_07270 at 1538.094 kb on - strand, within IAI47_07270 at 1538.094 kb on - strand, within IAI47_07270 at 1538.206 kb on + strand, within IAI47_07270 at 1538.206 kb on + strand, within IAI47_07270 at 1538.207 kb on - strand, within IAI47_07270 at 1538.207 kb on - strand, within IAI47_07270 at 1538.263 kb on + strand at 1538.264 kb on - strand at 1538.284 kb on + strand at 1538.284 kb on + strand at 1538.284 kb on + strand at 1538.284 kb on + strand at 1538.285 kb on - strand at 1538.285 kb on - strand at 1538.285 kb on - strand at 1538.309 kb on + strand at 1538.387 kb on + strand at 1538.387 kb on + strand at 1538.387 kb on + strand at 1538.388 kb on - strand at 1538.388 kb on - strand at 1538.390 kb on - strand at 1538.400 kb on - strand at 1538.483 kb on + strand at 1538.595 kb on + strand, within IAI47_07275 at 1538.596 kb on - strand, within IAI47_07275 at 1538.642 kb on - strand, within IAI47_07275 at 1538.725 kb on - strand, within IAI47_07275 at 1538.734 kb on - strand, within IAI47_07275 at 1538.734 kb on - strand, within IAI47_07275 at 1538.775 kb on + strand, within IAI47_07275 at 1538.776 kb on - strand, within IAI47_07275 at 1538.776 kb on - strand, within IAI47_07275 at 1538.776 kb on - strand, within IAI47_07275 at 1538.776 kb on - strand, within IAI47_07275 at 1538.831 kb on - strand, within IAI47_07275 at 1538.835 kb on + strand, within IAI47_07275 at 1538.835 kb on + strand, within IAI47_07275 at 1538.836 kb on - strand, within IAI47_07275 at 1538.836 kb on - strand, within IAI47_07275 at 1538.853 kb on - strand, within IAI47_07275 at 1538.906 kb on + strand, within IAI47_07275 at 1538.906 kb on + strand, within IAI47_07275 at 1538.907 kb on - strand, within IAI47_07275 at 1538.938 kb on + strand at 1538.938 kb on + strand at 1538.938 kb on + strand at 1538.938 kb on + strand at 1538.939 kb on - strand at 1538.939 kb on - strand at 1538.939 kb on - strand at 1538.974 kb on + strand at 1538.974 kb on + strand at 1538.975 kb on - strand at 1538.975 kb on - strand at 1538.975 kb on - strand at 1538.975 kb on - strand at 1538.994 kb on + strand at 1538.994 kb on + strand at 1539.023 kb on + strand at 1539.046 kb on + strand at 1539.046 kb on + strand at 1539.046 kb on + strand at 1539.047 kb on - strand at 1539.047 kb on - strand at 1539.047 kb on - strand at 1539.118 kb on - strand, within IAI47_07280 at 1539.164 kb on - strand, within IAI47_07280 at 1539.243 kb on + strand, within IAI47_07280 at 1539.246 kb on + strand, within IAI47_07280 at 1539.247 kb on - strand, within IAI47_07280 at 1539.247 kb on - strand, within IAI47_07280 at 1539.247 kb on - strand, within IAI47_07280 at 1539.302 kb on + strand, within IAI47_07280 at 1539.302 kb on + strand, within IAI47_07280 at 1539.303 kb on - strand, within IAI47_07280 at 1539.396 kb on + strand, within IAI47_07280 at 1539.396 kb on + strand, within IAI47_07280 at 1539.412 kb on + strand, within IAI47_07280 at 1539.412 kb on + strand, within IAI47_07280 at 1539.413 kb on - strand, within IAI47_07280 at 1539.413 kb on - strand, within IAI47_07280 at 1539.445 kb on + strand, within IAI47_07280 at 1539.571 kb on + strand, within IAI47_07280 at 1539.601 kb on + strand, within IAI47_07280 at 1539.601 kb on + strand, within IAI47_07280 at 1539.602 kb on - strand, within IAI47_07280 at 1539.668 kb on - strand at 1539.673 kb on + strand at 1539.673 kb on + strand at 1539.673 kb on + strand at 1539.674 kb on - strand at 1539.679 kb on + strand at 1539.724 kb on + strand at 1539.724 kb on + strand at 1539.724 kb on + strand at 1539.724 kb on + strand at 1539.724 kb on + strand at 1539.724 kb on + strand at 1539.725 kb on - strand at 1539.725 kb on - strand at 1539.725 kb on - strand at 1539.725 kb on - strand at 1539.725 kb on - strand at 1539.725 kb on - strand at 1539.729 kb on + strand at 1539.729 kb on + strand at 1539.729 kb on + strand at 1539.729 kb on + strand at 1539.729 kb on + strand at 1539.730 kb on - strand at 1539.730 kb on - strand at 1539.730 kb on - strand at 1539.730 kb on - strand at 1539.730 kb on - strand at 1539.730 kb on - strand at 1539.773 kb on + strand at 1539.774 kb on - strand at 1539.856 kb on + strand at 1539.856 kb on + strand at 1539.856 kb on + strand at 1539.857 kb on - strand at 1539.866 kb on - strand at 1539.866 kb on - strand at 1539.896 kb on + strand at 1539.926 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 1,537,513 + -0.3 1,537,513 + +1.4 1,537,514 - +0.1 1,537,514 - +1.6 1,537,514 - -2.3 1,537,516 + -2.5 1,537,516 + +0.4 1,537,516 + +0.3 1,537,517 - -0.3 1,537,571 + +1.2 1,537,572 - +1.5 1,537,572 - +1.9 1,537,572 - -2.1 1,537,583 + +1.2 1,537,583 + -0.2 1,537,584 - +0.4 1,537,594 + -0.3 1,537,594 + -0.2 1,537,595 - -0.2 1,537,595 - +1.4 1,537,595 - +0.9 1,537,595 - -1.3 1,537,595 - -0.9 1,537,600 + +1.2 1,537,600 + -0.1 1,537,601 - +0.8 1,537,601 - -0.1 1,537,606 + -1.8 1,537,606 + -1.9 1,537,606 + +0.0 1,537,606 + +1.8 1,537,607 - -2.6 1,537,607 - -1.2 1,537,607 - +0.8 1,537,612 - -0.1 1,537,612 - +1.6 1,537,612 - +0.3 1,537,643 + -2.4 1,537,647 + -0.2 1,537,647 + -1.4 1,537,647 + +1.4 1,537,647 + -0.9 1,537,648 - -0.2 1,537,648 - -0.9 1,537,655 + -0.6 1,537,656 - -0.6 1,537,656 - +3.2 1,537,656 - -0.0 1,537,656 - -0.2 1,537,656 - -1.1 1,537,656 - -0.4 1,537,656 - -0.3 1,537,656 - +1.8 1,537,656 - -0.2 1,537,656 - -0.2 1,537,660 + +0.6 1,537,660 + -1.1 1,537,661 - +0.5 1,537,661 - +1.3 1,537,698 + +0.2 1,537,699 - +0.5 1,537,716 + IAI47_07270 0.12 -0.1 1,537,716 + IAI47_07270 0.12 +3.0 1,537,717 - IAI47_07270 0.12 +2.2 1,537,743 + IAI47_07270 0.16 +0.4 1,537,743 + IAI47_07270 0.16 -1.6 1,537,744 - IAI47_07270 0.16 -1.7 1,537,744 - IAI47_07270 0.16 +0.6 1,537,746 - IAI47_07270 0.16 +0.5 1,537,746 - IAI47_07270 0.16 +0.4 1,537,818 + IAI47_07270 0.28 +1.3 1,537,818 + IAI47_07270 0.28 +0.9 1,537,819 - IAI47_07270 0.28 -0.6 1,537,819 - IAI47_07270 0.28 +0.4 1,537,819 - IAI47_07270 0.28 +0.4 1,537,851 + IAI47_07270 0.33 -2.3 1,537,852 - IAI47_07270 0.33 +0.4 1,537,852 - IAI47_07270 0.33 -0.9 1,537,891 + IAI47_07270 0.39 -1.7 1,537,913 + IAI47_07270 0.43 +3.7 1,537,913 + IAI47_07270 0.43 +1.8 1,537,914 - IAI47_07270 0.43 +0.3 1,537,953 + IAI47_07270 0.49 +1.0 1,537,976 + IAI47_07270 0.53 +1.9 1,537,977 - IAI47_07270 0.53 -0.2 1,538,038 - IAI47_07270 0.63 -1.4 1,538,059 + IAI47_07270 0.66 +0.2 1,538,059 + IAI47_07270 0.66 -1.1 1,538,060 - IAI47_07270 0.66 +1.9 1,538,060 - IAI47_07270 0.66 +1.0 1,538,069 + IAI47_07270 0.67 +0.8 1,538,069 + IAI47_07270 0.67 +0.7 1,538,070 - IAI47_07270 0.68 +1.7 1,538,070 - IAI47_07270 0.68 +2.5 1,538,091 + IAI47_07270 0.71 +0.9 1,538,091 + IAI47_07270 0.71 +0.2 1,538,091 + IAI47_07270 0.71 -2.7 1,538,091 + IAI47_07270 0.71 -0.1 1,538,091 + IAI47_07270 0.71 +1.6 1,538,092 - IAI47_07270 0.71 -0.4 1,538,093 + IAI47_07270 0.71 +0.5 1,538,093 + IAI47_07270 0.71 +0.7 1,538,093 + IAI47_07270 0.71 +0.8 1,538,093 + IAI47_07270 0.71 +1.1 1,538,093 + IAI47_07270 0.71 +0.1 1,538,093 + IAI47_07270 0.71 +0.9 1,538,093 + IAI47_07270 0.71 -1.8 1,538,093 + IAI47_07270 0.71 +1.3 1,538,093 + IAI47_07270 0.71 +0.5 1,538,093 + IAI47_07270 0.71 +0.5 1,538,094 - IAI47_07270 0.71 -1.0 1,538,094 - IAI47_07270 0.71 -0.6 1,538,094 - IAI47_07270 0.71 -2.7 1,538,094 - IAI47_07270 0.71 -0.1 1,538,094 - IAI47_07270 0.71 -1.2 1,538,094 - IAI47_07270 0.71 -0.1 1,538,094 - IAI47_07270 0.71 -2.5 1,538,094 - IAI47_07270 0.71 +1.7 1,538,094 - IAI47_07270 0.71 -0.8 1,538,206 + IAI47_07270 0.89 +0.6 1,538,206 + IAI47_07270 0.89 +0.5 1,538,207 - IAI47_07270 0.89 -2.3 1,538,207 - IAI47_07270 0.89 -0.2 1,538,263 + -1.3 1,538,264 - +0.8 1,538,284 + -1.0 1,538,284 + +0.4 1,538,284 + +1.2 1,538,284 + -0.4 1,538,285 - -1.1 1,538,285 - +2.3 1,538,285 - -0.2 1,538,309 + -1.4 1,538,387 + +0.1 1,538,387 + +2.8 1,538,387 + -2.3 1,538,388 - -0.9 1,538,388 - -0.2 1,538,390 - -0.9 1,538,400 - -0.4 1,538,483 + +2.4 1,538,595 + IAI47_07275 0.29 -0.2 1,538,596 - IAI47_07275 0.29 +0.8 1,538,642 - IAI47_07275 0.38 -1.5 1,538,725 - IAI47_07275 0.53 -1.4 1,538,734 - IAI47_07275 0.55 -0.5 1,538,734 - IAI47_07275 0.55 +1.2 1,538,775 + IAI47_07275 0.63 +0.8 1,538,776 - IAI47_07275 0.63 +1.1 1,538,776 - IAI47_07275 0.63 -0.4 1,538,776 - IAI47_07275 0.63 -1.4 1,538,776 - IAI47_07275 0.63 +1.0 1,538,831 - IAI47_07275 0.73 -1.3 1,538,835 + IAI47_07275 0.74 -0.2 1,538,835 + IAI47_07275 0.74 +1.2 1,538,836 - IAI47_07275 0.74 -0.2 1,538,836 - IAI47_07275 0.74 +1.4 1,538,853 - IAI47_07275 0.77 +0.5 1,538,906 + IAI47_07275 0.87 -0.8 1,538,906 + IAI47_07275 0.87 -1.1 1,538,907 - IAI47_07275 0.87 +1.4 1,538,938 + +1.2 1,538,938 + +1.4 1,538,938 + +1.8 1,538,938 + -0.2 1,538,939 - -0.1 1,538,939 - +2.1 1,538,939 - -2.0 1,538,974 + +1.8 1,538,974 + -0.1 1,538,975 - +0.1 1,538,975 - +1.1 1,538,975 - +0.5 1,538,975 - +0.3 1,538,994 + -0.6 1,538,994 + +0.5 1,539,023 + -0.1 1,539,046 + +1.2 1,539,046 + +0.4 1,539,046 + -0.9 1,539,047 - +0.5 1,539,047 - +4.3 1,539,047 - -0.6 1,539,118 - IAI47_07280 0.18 +1.0 1,539,164 - IAI47_07280 0.24 -0.9 1,539,243 + IAI47_07280 0.36 -1.6 1,539,246 + IAI47_07280 0.36 -0.6 1,539,247 - IAI47_07280 0.36 -1.4 1,539,247 - IAI47_07280 0.36 +0.7 1,539,247 - IAI47_07280 0.36 +1.1 1,539,302 + IAI47_07280 0.44 +0.7 1,539,302 + IAI47_07280 0.44 +1.0 1,539,303 - IAI47_07280 0.44 -1.5 1,539,396 + IAI47_07280 0.58 +0.7 1,539,396 + IAI47_07280 0.58 +1.6 1,539,412 + IAI47_07280 0.60 +1.1 1,539,412 + IAI47_07280 0.60 -0.0 1,539,413 - IAI47_07280 0.60 -2.0 1,539,413 - IAI47_07280 0.60 +1.9 1,539,445 + IAI47_07280 0.65 +0.7 1,539,571 + IAI47_07280 0.83 +0.1 1,539,601 + IAI47_07280 0.87 +1.3 1,539,601 + IAI47_07280 0.87 -1.1 1,539,602 - IAI47_07280 0.87 +0.5 1,539,668 - +1.9 1,539,673 + -1.5 1,539,673 + -0.1 1,539,673 + +1.2 1,539,674 - -0.6 1,539,679 + +0.6 1,539,724 + -0.0 1,539,724 + -2.0 1,539,724 + -0.6 1,539,724 + -1.2 1,539,724 + -3.1 1,539,724 + -1.7 1,539,725 - -1.5 1,539,725 - +0.1 1,539,725 - -0.2 1,539,725 - -1.2 1,539,725 - -0.3 1,539,725 - +0.5 1,539,729 + -0.2 1,539,729 + +0.1 1,539,729 + +0.7 1,539,729 + +0.2 1,539,729 + +0.1 1,539,730 - -0.9 1,539,730 - +2.3 1,539,730 - -0.7 1,539,730 - -0.4 1,539,730 - +0.4 1,539,730 - -1.3 1,539,773 + -0.6 1,539,774 - +0.9 1,539,856 + -0.4 1,539,856 + -1.2 1,539,856 + +0.9 1,539,857 - -0.0 1,539,866 - +0.8 1,539,866 - -0.3 1,539,896 + +1.2 1,539,926 - +1.2
Or see this region's nucleotide sequence