Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03930 and IAI47_03935 are separated by 191 nucleotides IAI47_03935 and IAI47_03940 overlap by 4 nucleotides IAI47_03940 and IAI47_03945 overlap by 4 nucleotides IAI47_03945 and IAI47_03950 overlap by 50 nucleotides IAI47_03950 and IAI47_03955 are separated by 101 nucleotides
IAI47_03930: IAI47_03930 - thymidylate synthase, at 819,518 to 820,312
_03930
IAI47_03935: IAI47_03935 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 820,504 to 820,974
_03935
IAI47_03940: IAI47_03940 - prepilin peptidase-dependent protein, at 820,971 to 821,498
_03940
IAI47_03945: IAI47_03945 - DUF2509 family protein, at 821,495 to 821,899
_03945
IAI47_03950: IAI47_03950 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 821,850 to 822,185
_03950
IAI47_03955: IAI47_03955 - exodeoxyribonuclease V subunit gamma, at 822,287 to 825,664
_03955
Position (kb) 820
821
822 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 820.320 kb on + strand at 820.320 kb on + strand at 820.321 kb on - strand at 820.321 kb on - strand at 820.321 kb on - strand at 820.324 kb on + strand at 820.324 kb on + strand at 820.324 kb on + strand at 820.324 kb on + strand at 820.325 kb on - strand at 820.331 kb on + strand at 820.332 kb on - strand at 820.332 kb on - strand at 820.429 kb on + strand at 820.429 kb on + strand at 820.429 kb on + strand at 820.430 kb on - strand at 820.430 kb on - strand at 820.430 kb on - strand at 820.430 kb on - strand at 820.459 kb on - strand at 820.485 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.530 kb on + strand at 820.530 kb on + strand at 820.531 kb on - strand at 820.531 kb on - strand at 820.531 kb on - strand at 820.692 kb on + strand, within IAI47_03935 at 820.693 kb on - strand, within IAI47_03935 at 820.706 kb on + strand, within IAI47_03935 at 820.706 kb on + strand, within IAI47_03935 at 820.707 kb on - strand, within IAI47_03935 at 820.707 kb on - strand, within IAI47_03935 at 820.707 kb on - strand, within IAI47_03935 at 820.707 kb on - strand, within IAI47_03935 at 820.734 kb on + strand, within IAI47_03935 at 820.734 kb on + strand, within IAI47_03935 at 820.734 kb on + strand, within IAI47_03935 at 820.735 kb on - strand, within IAI47_03935 at 820.787 kb on - strand, within IAI47_03935 at 820.819 kb on + strand, within IAI47_03935 at 820.819 kb on + strand, within IAI47_03935 at 820.819 kb on + strand, within IAI47_03935 at 820.819 kb on + strand, within IAI47_03935 at 820.819 kb on + strand, within IAI47_03935 at 820.820 kb on - strand, within IAI47_03935 at 820.820 kb on - strand, within IAI47_03935 at 820.820 kb on - strand, within IAI47_03935 at 820.820 kb on - strand, within IAI47_03935 at 820.820 kb on - strand, within IAI47_03935 at 820.820 kb on - strand, within IAI47_03935 at 820.846 kb on + strand, within IAI47_03935 at 820.846 kb on + strand, within IAI47_03935 at 820.847 kb on - strand, within IAI47_03935 at 820.847 kb on - strand, within IAI47_03935 at 820.847 kb on - strand, within IAI47_03935 at 820.847 kb on - strand, within IAI47_03935 at 820.847 kb on - strand, within IAI47_03935 at 820.907 kb on + strand, within IAI47_03935 at 820.907 kb on + strand, within IAI47_03935 at 820.907 kb on + strand, within IAI47_03935 at 820.908 kb on - strand, within IAI47_03935 at 820.908 kb on - strand, within IAI47_03935 at 820.908 kb on - strand, within IAI47_03935 at 820.918 kb on - strand, within IAI47_03935 at 820.918 kb on - strand, within IAI47_03935 at 820.918 kb on - strand, within IAI47_03935 at 820.918 kb on - strand, within IAI47_03935 at 820.918 kb on - strand, within IAI47_03935 at 820.918 kb on - strand, within IAI47_03935 at 820.918 kb on - strand, within IAI47_03935 at 821.116 kb on + strand, within IAI47_03940 at 821.117 kb on - strand, within IAI47_03940 at 821.117 kb on - strand, within IAI47_03940 at 821.117 kb on - strand, within IAI47_03940 at 821.164 kb on - strand, within IAI47_03940 at 821.164 kb on - strand, within IAI47_03940 at 821.280 kb on + strand, within IAI47_03940 at 821.280 kb on + strand, within IAI47_03940 at 821.281 kb on - strand, within IAI47_03940 at 821.281 kb on - strand, within IAI47_03940 at 821.281 kb on - strand, within IAI47_03940 at 821.281 kb on - strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.284 kb on - strand, within IAI47_03940 at 821.284 kb on - strand, within IAI47_03940 at 821.284 kb on - strand, within IAI47_03940 at 821.284 kb on - strand, within IAI47_03940 at 821.378 kb on + strand, within IAI47_03940 at 821.378 kb on + strand, within IAI47_03940 at 821.428 kb on + strand, within IAI47_03940 at 821.428 kb on + strand, within IAI47_03940 at 821.428 kb on + strand, within IAI47_03940 at 821.429 kb on - strand, within IAI47_03940 at 821.429 kb on - strand, within IAI47_03940 at 821.533 kb on - strand at 821.539 kb on + strand, within IAI47_03945 at 821.539 kb on + strand, within IAI47_03945 at 821.539 kb on + strand, within IAI47_03945 at 821.539 kb on + strand, within IAI47_03945 at 821.539 kb on + strand, within IAI47_03945 at 821.539 kb on + strand, within IAI47_03945 at 821.539 kb on + strand, within IAI47_03945 at 821.540 kb on - strand, within IAI47_03945 at 821.540 kb on - strand, within IAI47_03945 at 821.540 kb on - strand, within IAI47_03945 at 821.557 kb on + strand, within IAI47_03945 at 821.558 kb on - strand, within IAI47_03945 at 821.739 kb on + strand, within IAI47_03945 at 821.739 kb on + strand, within IAI47_03945 at 821.740 kb on - strand, within IAI47_03945 at 821.740 kb on - strand, within IAI47_03945 at 821.740 kb on - strand, within IAI47_03945 at 821.770 kb on + strand, within IAI47_03945 at 821.771 kb on - strand, within IAI47_03945 at 821.864 kb on + strand at 821.864 kb on + strand at 821.865 kb on - strand at 821.897 kb on + strand at 821.897 kb on + strand at 821.944 kb on + strand, within IAI47_03950 at 821.944 kb on + strand, within IAI47_03950 at 821.953 kb on + strand, within IAI47_03950 at 821.953 kb on + strand, within IAI47_03950 at 821.954 kb on - strand, within IAI47_03950 at 821.954 kb on - strand, within IAI47_03950 at 821.954 kb on - strand, within IAI47_03950 at 821.954 kb on - strand, within IAI47_03950 at 821.976 kb on + strand, within IAI47_03950 at 821.976 kb on + strand, within IAI47_03950 at 821.977 kb on - strand, within IAI47_03950 at 821.977 kb on - strand, within IAI47_03950 at 821.977 kb on - strand, within IAI47_03950 at 822.015 kb on + strand, within IAI47_03950 at 822.015 kb on + strand, within IAI47_03950 at 822.016 kb on - strand, within IAI47_03950 at 822.016 kb on - strand, within IAI47_03950 at 822.136 kb on + strand, within IAI47_03950 at 822.137 kb on - strand, within IAI47_03950 at 822.147 kb on + strand, within IAI47_03950 at 822.148 kb on - strand, within IAI47_03950 at 822.148 kb on - strand, within IAI47_03950 at 822.155 kb on + strand at 822.155 kb on + strand at 822.155 kb on + strand at 822.156 kb on - strand at 822.156 kb on - strand at 822.184 kb on - strand at 822.231 kb on + strand at 822.251 kb on - strand at 822.271 kb on + strand at 822.271 kb on + strand at 822.271 kb on + strand at 822.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 820,320 + +0.4 820,320 + -1.1 820,321 - -0.4 820,321 - -1.2 820,321 - -0.3 820,324 + -0.8 820,324 + +1.2 820,324 + -0.2 820,324 + -0.3 820,325 - +0.7 820,331 + -0.9 820,332 - -0.7 820,332 - -2.2 820,429 + -0.3 820,429 + -0.3 820,429 + -1.5 820,430 - -0.6 820,430 - -1.0 820,430 - +2.8 820,430 - -0.2 820,459 - +1.8 820,485 + -0.9 820,516 + -1.4 820,516 + +0.0 820,516 + -0.9 820,516 + +2.3 820,516 + -0.5 820,516 + +1.1 820,516 + +0.6 820,516 + -1.7 820,517 - +0.6 820,517 - -0.4 820,517 - -3.1 820,517 - +0.0 820,517 - +1.9 820,517 - +1.3 820,517 - +0.8 820,517 - -0.1 820,517 - -1.0 820,520 + -0.7 820,520 + +0.7 820,520 + -0.3 820,520 + +0.8 820,520 + -0.1 820,520 + +0.8 820,520 + -2.0 820,520 + +1.4 820,520 + +0.5 820,520 + +1.4 820,520 + -0.1 820,521 - +0.2 820,521 - -0.4 820,521 - +0.5 820,521 - -0.9 820,521 - +0.5 820,521 - -0.7 820,521 - -0.7 820,521 - +0.7 820,521 - -0.3 820,521 - -0.3 820,521 - +1.0 820,521 - +1.6 820,521 - +0.5 820,521 - +1.0 820,521 - -0.7 820,521 - -0.1 820,521 - -0.1 820,521 - -0.6 820,530 + -1.8 820,530 + +1.5 820,531 - +1.4 820,531 - +0.6 820,531 - -1.3 820,692 + IAI47_03935 0.40 +0.3 820,693 - IAI47_03935 0.40 -0.9 820,706 + IAI47_03935 0.43 -1.7 820,706 + IAI47_03935 0.43 -1.1 820,707 - IAI47_03935 0.43 +0.5 820,707 - IAI47_03935 0.43 +0.5 820,707 - IAI47_03935 0.43 +0.3 820,707 - IAI47_03935 0.43 -1.0 820,734 + IAI47_03935 0.49 +0.4 820,734 + IAI47_03935 0.49 +1.0 820,734 + IAI47_03935 0.49 +1.9 820,735 - IAI47_03935 0.49 +0.4 820,787 - IAI47_03935 0.60 +0.5 820,819 + IAI47_03935 0.67 -1.7 820,819 + IAI47_03935 0.67 -0.9 820,819 + IAI47_03935 0.67 -1.7 820,819 + IAI47_03935 0.67 +1.3 820,819 + IAI47_03935 0.67 +0.0 820,820 - IAI47_03935 0.67 +1.1 820,820 - IAI47_03935 0.67 +0.3 820,820 - IAI47_03935 0.67 -1.2 820,820 - IAI47_03935 0.67 -0.6 820,820 - IAI47_03935 0.67 +0.5 820,820 - IAI47_03935 0.67 +0.2 820,846 + IAI47_03935 0.73 -1.5 820,846 + IAI47_03935 0.73 +0.6 820,847 - IAI47_03935 0.73 -0.5 820,847 - IAI47_03935 0.73 +2.1 820,847 - IAI47_03935 0.73 +2.0 820,847 - IAI47_03935 0.73 +2.3 820,847 - IAI47_03935 0.73 +1.4 820,907 + IAI47_03935 0.86 -1.7 820,907 + IAI47_03935 0.86 +1.5 820,907 + IAI47_03935 0.86 -0.5 820,908 - IAI47_03935 0.86 -0.4 820,908 - IAI47_03935 0.86 +1.1 820,908 - IAI47_03935 0.86 -3.3 820,918 - IAI47_03935 0.88 -1.3 820,918 - IAI47_03935 0.88 +1.3 820,918 - IAI47_03935 0.88 -1.7 820,918 - IAI47_03935 0.88 -2.3 820,918 - IAI47_03935 0.88 -0.1 820,918 - IAI47_03935 0.88 +1.9 820,918 - IAI47_03935 0.88 +1.9 821,116 + IAI47_03940 0.27 -0.5 821,117 - IAI47_03940 0.28 -1.9 821,117 - IAI47_03940 0.28 +0.7 821,117 - IAI47_03940 0.28 -1.5 821,164 - IAI47_03940 0.37 -1.6 821,164 - IAI47_03940 0.37 +0.2 821,280 + IAI47_03940 0.59 -1.5 821,280 + IAI47_03940 0.59 -0.0 821,281 - IAI47_03940 0.59 +0.5 821,281 - IAI47_03940 0.59 +1.7 821,281 - IAI47_03940 0.59 -0.9 821,281 - IAI47_03940 0.59 +2.3 821,283 + IAI47_03940 0.59 +1.7 821,283 + IAI47_03940 0.59 +0.6 821,283 + IAI47_03940 0.59 +0.0 821,283 + IAI47_03940 0.59 -0.1 821,283 + IAI47_03940 0.59 -1.1 821,283 + IAI47_03940 0.59 -0.7 821,283 + IAI47_03940 0.59 -1.7 821,283 + IAI47_03940 0.59 -0.4 821,284 - IAI47_03940 0.59 -1.4 821,284 - IAI47_03940 0.59 +1.3 821,284 - IAI47_03940 0.59 +1.2 821,284 - IAI47_03940 0.59 +0.3 821,378 + IAI47_03940 0.77 -2.0 821,378 + IAI47_03940 0.77 -1.5 821,428 + IAI47_03940 0.87 +0.9 821,428 + IAI47_03940 0.87 +0.3 821,428 + IAI47_03940 0.87 -0.8 821,429 - IAI47_03940 0.87 +0.2 821,429 - IAI47_03940 0.87 -0.2 821,533 - +3.0 821,539 + IAI47_03945 0.11 -0.7 821,539 + IAI47_03945 0.11 +3.4 821,539 + IAI47_03945 0.11 +2.3 821,539 + IAI47_03945 0.11 +0.6 821,539 + IAI47_03945 0.11 -0.4 821,539 + IAI47_03945 0.11 +0.6 821,539 + IAI47_03945 0.11 +0.4 821,540 - IAI47_03945 0.11 +1.6 821,540 - IAI47_03945 0.11 +0.1 821,540 - IAI47_03945 0.11 +2.7 821,557 + IAI47_03945 0.15 +3.3 821,558 - IAI47_03945 0.16 -0.5 821,739 + IAI47_03945 0.60 +0.9 821,739 + IAI47_03945 0.60 +1.3 821,740 - IAI47_03945 0.60 +0.6 821,740 - IAI47_03945 0.60 +0.2 821,740 - IAI47_03945 0.60 -1.7 821,770 + IAI47_03945 0.68 +2.6 821,771 - IAI47_03945 0.68 +0.3 821,864 + -0.1 821,864 + +0.9 821,865 - +0.7 821,897 + +0.0 821,897 + -0.1 821,944 + IAI47_03950 0.28 +1.6 821,944 + IAI47_03950 0.28 -0.6 821,953 + IAI47_03950 0.31 -0.4 821,953 + IAI47_03950 0.31 -2.1 821,954 - IAI47_03950 0.31 +0.7 821,954 - IAI47_03950 0.31 +0.4 821,954 - IAI47_03950 0.31 -0.1 821,954 - IAI47_03950 0.31 -2.2 821,976 + IAI47_03950 0.38 +1.1 821,976 + IAI47_03950 0.38 +0.1 821,977 - IAI47_03950 0.38 +1.7 821,977 - IAI47_03950 0.38 +0.9 821,977 - IAI47_03950 0.38 -1.2 822,015 + IAI47_03950 0.49 -0.4 822,015 + IAI47_03950 0.49 +0.5 822,016 - IAI47_03950 0.49 +0.3 822,016 - IAI47_03950 0.49 +4.4 822,136 + IAI47_03950 0.85 -1.1 822,137 - IAI47_03950 0.85 -2.9 822,147 + IAI47_03950 0.88 +0.0 822,148 - IAI47_03950 0.89 +0.7 822,148 - IAI47_03950 0.89 -1.3 822,155 + +0.9 822,155 + +0.3 822,155 + -1.5 822,156 - -1.1 822,156 - +1.2 822,184 - +1.3 822,231 + +0.3 822,251 - +1.7 822,271 + -1.1 822,271 + +0.4 822,271 + +1.3 822,272 - -0.2
Or see this region's nucleotide sequence