Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03565 and IAI47_03570 overlap by 1 nucleotides IAI47_03570 and IAI47_03575 are separated by 65 nucleotides IAI47_03575 and IAI47_03580 are separated by 49 nucleotides
IAI47_03565: IAI47_03565 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 745,399 to 746,118
_03565
IAI47_03570: IAI47_03570 - YggL family protein, at 746,118 to 746,444
_03570
IAI47_03575: IAI47_03575 - DUF2884 domain-containing protein, at 746,510 to 747,226
_03575
IAI47_03580: IAI47_03580 - radical SAM family heme chaperone HemW, at 747,276 to 748,415
_03580
Position (kb) 746
747
748 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 745.543 kb on + strand, within IAI47_03565 at 745.543 kb on + strand, within IAI47_03565 at 745.544 kb on - strand, within IAI47_03565 at 745.638 kb on + strand, within IAI47_03565 at 745.638 kb on + strand, within IAI47_03565 at 745.697 kb on + strand, within IAI47_03565 at 745.697 kb on + strand, within IAI47_03565 at 745.697 kb on + strand, within IAI47_03565 at 745.697 kb on + strand, within IAI47_03565 at 745.697 kb on + strand, within IAI47_03565 at 745.697 kb on + strand, within IAI47_03565 at 745.698 kb on - strand, within IAI47_03565 at 745.698 kb on - strand, within IAI47_03565 at 745.698 kb on - strand, within IAI47_03565 at 745.698 kb on - strand, within IAI47_03565 at 745.807 kb on - strand, within IAI47_03565 at 745.839 kb on + strand, within IAI47_03565 at 745.839 kb on + strand, within IAI47_03565 at 745.839 kb on + strand, within IAI47_03565 at 745.839 kb on + strand, within IAI47_03565 at 745.839 kb on + strand, within IAI47_03565 at 745.840 kb on - strand, within IAI47_03565 at 745.840 kb on - strand, within IAI47_03565 at 745.855 kb on - strand, within IAI47_03565 at 745.855 kb on - strand, within IAI47_03565 at 745.899 kb on + strand, within IAI47_03565 at 745.900 kb on - strand, within IAI47_03565 at 745.900 kb on - strand, within IAI47_03565 at 745.900 kb on - strand, within IAI47_03565 at 745.900 kb on - strand, within IAI47_03565 at 745.900 kb on - strand, within IAI47_03565 at 745.900 kb on - strand, within IAI47_03565 at 745.900 kb on - strand, within IAI47_03565 at 745.949 kb on - strand, within IAI47_03565 at 745.949 kb on - strand, within IAI47_03565 at 745.949 kb on - strand, within IAI47_03565 at 745.949 kb on - strand, within IAI47_03565 at 745.959 kb on + strand, within IAI47_03565 at 745.959 kb on + strand, within IAI47_03565 at 745.959 kb on + strand, within IAI47_03565 at 745.959 kb on + strand, within IAI47_03565 at 745.959 kb on + strand, within IAI47_03565 at 745.959 kb on + strand, within IAI47_03565 at 745.959 kb on + strand, within IAI47_03565 at 745.960 kb on - strand, within IAI47_03565 at 745.960 kb on - strand, within IAI47_03565 at 745.960 kb on - strand, within IAI47_03565 at 746.017 kb on + strand, within IAI47_03565 at 746.017 kb on + strand, within IAI47_03565 at 746.017 kb on + strand, within IAI47_03565 at 746.017 kb on + strand, within IAI47_03565 at 746.017 kb on + strand, within IAI47_03565 at 746.017 kb on + strand, within IAI47_03565 at 746.018 kb on - strand, within IAI47_03565 at 746.018 kb on - strand, within IAI47_03565 at 746.018 kb on - strand, within IAI47_03565 at 746.075 kb on + strand at 746.076 kb on - strand at 746.088 kb on - strand at 746.096 kb on + strand at 746.096 kb on + strand at 746.096 kb on + strand at 746.097 kb on - strand at 746.116 kb on + strand at 746.116 kb on + strand at 746.302 kb on - strand, within IAI47_03570 at 746.302 kb on - strand, within IAI47_03570 at 746.342 kb on + strand, within IAI47_03570 at 746.343 kb on - strand, within IAI47_03570 at 746.348 kb on + strand, within IAI47_03570 at 746.348 kb on + strand, within IAI47_03570 at 746.348 kb on + strand, within IAI47_03570 at 746.349 kb on - strand, within IAI47_03570 at 746.442 kb on + strand at 746.442 kb on + strand at 746.442 kb on + strand at 746.443 kb on - strand at 746.443 kb on - strand at 746.443 kb on - strand at 746.498 kb on + strand at 746.499 kb on - strand at 746.505 kb on + strand at 746.505 kb on + strand at 746.505 kb on + strand at 746.505 kb on + strand at 746.505 kb on + strand at 746.505 kb on + strand at 746.505 kb on + strand at 746.506 kb on - strand at 746.506 kb on - strand at 746.506 kb on - strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.510 kb on - strand at 746.510 kb on - strand at 746.510 kb on - strand at 746.510 kb on - strand at 746.510 kb on - strand at 746.510 kb on - strand at 746.510 kb on - strand at 746.510 kb on - strand at 746.510 kb on - strand at 746.510 kb on - strand at 746.510 kb on - strand at 746.518 kb on + strand at 746.519 kb on - strand at 746.545 kb on - strand at 746.545 kb on - strand at 746.570 kb on + strand at 746.570 kb on + strand at 746.571 kb on - strand at 746.571 kb on - strand at 746.571 kb on - strand at 746.571 kb on - strand at 746.571 kb on - strand at 746.571 kb on - strand at 746.584 kb on + strand, within IAI47_03575 at 746.584 kb on + strand, within IAI47_03575 at 746.647 kb on + strand, within IAI47_03575 at 746.648 kb on - strand, within IAI47_03575 at 746.704 kb on + strand, within IAI47_03575 at 746.705 kb on - strand, within IAI47_03575 at 746.733 kb on - strand, within IAI47_03575 at 746.908 kb on + strand, within IAI47_03575 at 747.016 kb on + strand, within IAI47_03575 at 747.037 kb on + strand, within IAI47_03575 at 747.038 kb on - strand, within IAI47_03575 at 747.038 kb on - strand, within IAI47_03575 at 747.076 kb on + strand, within IAI47_03575 at 747.077 kb on - strand, within IAI47_03575 at 747.077 kb on - strand, within IAI47_03575 at 747.166 kb on + strand at 747.166 kb on + strand at 747.166 kb on + strand at 747.166 kb on + strand at 747.166 kb on + strand at 747.167 kb on - strand at 747.167 kb on - strand at 747.167 kb on - strand at 747.167 kb on - strand at 747.196 kb on + strand at 747.197 kb on - strand at 747.205 kb on + strand at 747.205 kb on + strand at 747.205 kb on + strand at 747.205 kb on + strand at 747.360 kb on + strand at 747.361 kb on - strand at 747.427 kb on + strand, within IAI47_03580 at 747.427 kb on + strand, within IAI47_03580 at 747.479 kb on + strand, within IAI47_03580 at 747.479 kb on + strand, within IAI47_03580 at 747.480 kb on - strand, within IAI47_03580 at 747.518 kb on - strand, within IAI47_03580 at 747.518 kb on - strand, within IAI47_03580 at 747.532 kb on + strand, within IAI47_03580 at 747.532 kb on + strand, within IAI47_03580 at 747.532 kb on + strand, within IAI47_03580 at 747.533 kb on - strand, within IAI47_03580 at 747.546 kb on - strand, within IAI47_03580 at 747.655 kb on + strand, within IAI47_03580 at 747.655 kb on + strand, within IAI47_03580 at 747.655 kb on + strand, within IAI47_03580 at 747.655 kb on + strand, within IAI47_03580 at 747.655 kb on + strand, within IAI47_03580 at 747.655 kb on + strand, within IAI47_03580 at 747.656 kb on - strand, within IAI47_03580 at 747.656 kb on - strand, within IAI47_03580 at 747.656 kb on - strand, within IAI47_03580 at 747.656 kb on - strand, within IAI47_03580 at 747.709 kb on + strand, within IAI47_03580 at 747.709 kb on + strand, within IAI47_03580 at 747.709 kb on + strand, within IAI47_03580 at 747.709 kb on + strand, within IAI47_03580 at 747.709 kb on + strand, within IAI47_03580 at 747.710 kb on - strand, within IAI47_03580 at 747.710 kb on - strand, within IAI47_03580 at 747.710 kb on - strand, within IAI47_03580 at 747.710 kb on - strand, within IAI47_03580 at 747.710 kb on - strand, within IAI47_03580 at 747.758 kb on + strand, within IAI47_03580 at 747.758 kb on + strand, within IAI47_03580 at 747.759 kb on - strand, within IAI47_03580 at 747.759 kb on - strand, within IAI47_03580 at 747.835 kb on + strand, within IAI47_03580 at 747.835 kb on + strand, within IAI47_03580 at 747.876 kb on + strand, within IAI47_03580 at 747.876 kb on + strand, within IAI47_03580 at 747.876 kb on + strand, within IAI47_03580 at 747.876 kb on + strand, within IAI47_03580 at 747.876 kb on + strand, within IAI47_03580 at 747.877 kb on - strand, within IAI47_03580 at 747.877 kb on - strand, within IAI47_03580 at 747.877 kb on - strand at 747.877 kb on - strand, within IAI47_03580 at 747.877 kb on - strand, within IAI47_03580 at 747.936 kb on - strand, within IAI47_03580 at 747.936 kb on - strand, within IAI47_03580 at 748.055 kb on + strand, within IAI47_03580 at 748.055 kb on + strand, within IAI47_03580 at 748.056 kb on - strand, within IAI47_03580 at 748.056 kb on - strand, within IAI47_03580 at 748.061 kb on + strand, within IAI47_03580 at 748.061 kb on + strand, within IAI47_03580 at 748.064 kb on + strand, within IAI47_03580 at 748.064 kb on + strand, within IAI47_03580 at 748.065 kb on - strand, within IAI47_03580 at 748.078 kb on + strand, within IAI47_03580
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 745,543 + IAI47_03565 0.20 -0.2 745,543 + IAI47_03565 0.20 -0.5 745,544 - IAI47_03565 0.20 -0.4 745,638 + IAI47_03565 0.33 -1.6 745,638 + IAI47_03565 0.33 +0.3 745,697 + IAI47_03565 0.41 -0.2 745,697 + IAI47_03565 0.41 +2.7 745,697 + IAI47_03565 0.41 +1.9 745,697 + IAI47_03565 0.41 +0.3 745,697 + IAI47_03565 0.41 -2.6 745,697 + IAI47_03565 0.41 -1.1 745,698 - IAI47_03565 0.42 +0.2 745,698 - IAI47_03565 0.42 +0.6 745,698 - IAI47_03565 0.42 +3.3 745,698 - IAI47_03565 0.42 +0.8 745,807 - IAI47_03565 0.57 -1.1 745,839 + IAI47_03565 0.61 +0.3 745,839 + IAI47_03565 0.61 -0.3 745,839 + IAI47_03565 0.61 +0.8 745,839 + IAI47_03565 0.61 +1.2 745,839 + IAI47_03565 0.61 +0.0 745,840 - IAI47_03565 0.61 -3.2 745,840 - IAI47_03565 0.61 +2.2 745,855 - IAI47_03565 0.63 -0.5 745,855 - IAI47_03565 0.63 +0.4 745,899 + IAI47_03565 0.69 +0.8 745,900 - IAI47_03565 0.70 -0.5 745,900 - IAI47_03565 0.70 +0.0 745,900 - IAI47_03565 0.70 +1.9 745,900 - IAI47_03565 0.70 +0.6 745,900 - IAI47_03565 0.70 -0.8 745,900 - IAI47_03565 0.70 +0.6 745,900 - IAI47_03565 0.70 +0.8 745,949 - IAI47_03565 0.76 -0.9 745,949 - IAI47_03565 0.76 +2.3 745,949 - IAI47_03565 0.76 +0.0 745,949 - IAI47_03565 0.76 -0.3 745,959 + IAI47_03565 0.78 +1.6 745,959 + IAI47_03565 0.78 +0.4 745,959 + IAI47_03565 0.78 +1.5 745,959 + IAI47_03565 0.78 +1.8 745,959 + IAI47_03565 0.78 +1.3 745,959 + IAI47_03565 0.78 +0.8 745,959 + IAI47_03565 0.78 +1.1 745,960 - IAI47_03565 0.78 -1.6 745,960 - IAI47_03565 0.78 +0.1 745,960 - IAI47_03565 0.78 +0.1 746,017 + IAI47_03565 0.86 -0.8 746,017 + IAI47_03565 0.86 -0.3 746,017 + IAI47_03565 0.86 +0.0 746,017 + IAI47_03565 0.86 +1.0 746,017 + IAI47_03565 0.86 +0.9 746,017 + IAI47_03565 0.86 +0.9 746,018 - IAI47_03565 0.86 -1.4 746,018 - IAI47_03565 0.86 -0.8 746,018 - IAI47_03565 0.86 -0.5 746,075 + -0.8 746,076 - +0.3 746,088 - -1.0 746,096 + -0.3 746,096 + +0.7 746,096 + +0.6 746,097 - +0.2 746,116 + +0.8 746,116 + +0.2 746,302 - IAI47_03570 0.56 -2.1 746,302 - IAI47_03570 0.56 +0.4 746,342 + IAI47_03570 0.69 +0.7 746,343 - IAI47_03570 0.69 -0.5 746,348 + IAI47_03570 0.70 -0.0 746,348 + IAI47_03570 0.70 -1.3 746,348 + IAI47_03570 0.70 -0.2 746,349 - IAI47_03570 0.71 -1.6 746,442 + +0.8 746,442 + -1.1 746,442 + +0.4 746,443 - -0.8 746,443 - -0.3 746,443 - -0.5 746,498 + +0.2 746,499 - +0.6 746,505 + -1.2 746,505 + -0.1 746,505 + -0.9 746,505 + +0.0 746,505 + +1.1 746,505 + -0.9 746,505 + -0.3 746,506 - -2.9 746,506 - -0.3 746,506 - +1.6 746,509 + +0.7 746,509 + +0.3 746,509 + +0.4 746,509 + +2.0 746,509 + -1.3 746,509 + -1.1 746,509 + +2.9 746,509 + +0.1 746,509 + -0.5 746,509 + +2.1 746,509 + -1.4 746,509 + -0.8 746,509 + -0.1 746,509 + +0.5 746,509 + +1.3 746,509 + -1.2 746,509 + +1.4 746,509 + +0.2 746,510 - +1.4 746,510 - -0.3 746,510 - -0.4 746,510 - +1.3 746,510 - +0.3 746,510 - -0.2 746,510 - +0.0 746,510 - +1.8 746,510 - +0.0 746,510 - +0.3 746,510 - +0.2 746,518 + -1.9 746,519 - -2.6 746,545 - +2.3 746,545 - +0.5 746,570 + -0.5 746,570 + -0.4 746,571 - +0.5 746,571 - -2.3 746,571 - +0.1 746,571 - +0.2 746,571 - -3.3 746,571 - -1.8 746,584 + IAI47_03575 0.10 +0.1 746,584 + IAI47_03575 0.10 +2.8 746,647 + IAI47_03575 0.19 +1.7 746,648 - IAI47_03575 0.19 -2.0 746,704 + IAI47_03575 0.27 +1.6 746,705 - IAI47_03575 0.27 +1.0 746,733 - IAI47_03575 0.31 +0.2 746,908 + IAI47_03575 0.56 +2.7 747,016 + IAI47_03575 0.71 -1.5 747,037 + IAI47_03575 0.74 -1.0 747,038 - IAI47_03575 0.74 +0.2 747,038 - IAI47_03575 0.74 -0.4 747,076 + IAI47_03575 0.79 +1.7 747,077 - IAI47_03575 0.79 +1.0 747,077 - IAI47_03575 0.79 +0.6 747,166 + +1.2 747,166 + -0.6 747,166 + -0.3 747,166 + +1.2 747,166 + -0.0 747,167 - +0.5 747,167 - -1.9 747,167 - -0.9 747,167 - +1.0 747,196 + +0.2 747,197 - +0.5 747,205 + -1.9 747,205 + +0.0 747,205 + -0.6 747,205 + -0.3 747,360 + +1.1 747,361 - +0.1 747,427 + IAI47_03580 0.13 -0.2 747,427 + IAI47_03580 0.13 -1.3 747,479 + IAI47_03580 0.18 -1.1 747,479 + IAI47_03580 0.18 -0.4 747,480 - IAI47_03580 0.18 -1.3 747,518 - IAI47_03580 0.21 +0.1 747,518 - IAI47_03580 0.21 -0.3 747,532 + IAI47_03580 0.22 -0.7 747,532 + IAI47_03580 0.22 -0.1 747,532 + IAI47_03580 0.22 -0.6 747,533 - IAI47_03580 0.23 +0.9 747,546 - IAI47_03580 0.24 -0.7 747,655 + IAI47_03580 0.33 -1.6 747,655 + IAI47_03580 0.33 -0.6 747,655 + IAI47_03580 0.33 +1.5 747,655 + IAI47_03580 0.33 +0.6 747,655 + IAI47_03580 0.33 +0.3 747,655 + IAI47_03580 0.33 +1.0 747,656 - IAI47_03580 0.33 +0.7 747,656 - IAI47_03580 0.33 +0.2 747,656 - IAI47_03580 0.33 +1.8 747,656 - IAI47_03580 0.33 +1.3 747,709 + IAI47_03580 0.38 +0.3 747,709 + IAI47_03580 0.38 +1.3 747,709 + IAI47_03580 0.38 +0.9 747,709 + IAI47_03580 0.38 -0.4 747,709 + IAI47_03580 0.38 -0.3 747,710 - IAI47_03580 0.38 -0.3 747,710 - IAI47_03580 0.38 +0.9 747,710 - IAI47_03580 0.38 -1.2 747,710 - IAI47_03580 0.38 +1.7 747,710 - IAI47_03580 0.38 +0.3 747,758 + IAI47_03580 0.42 -1.3 747,758 + IAI47_03580 0.42 -0.6 747,759 - IAI47_03580 0.42 +0.6 747,759 - IAI47_03580 0.42 +0.7 747,835 + IAI47_03580 0.49 -0.5 747,835 + IAI47_03580 0.49 -1.1 747,876 + IAI47_03580 0.53 -0.8 747,876 + IAI47_03580 0.53 -1.0 747,876 + IAI47_03580 0.53 +0.9 747,876 + IAI47_03580 0.53 +0.2 747,876 + IAI47_03580 0.53 -2.3 747,877 - IAI47_03580 0.53 -1.0 747,877 - IAI47_03580 0.53 -2.0 747,877 - -1.7 747,877 - IAI47_03580 0.53 -2.8 747,877 - IAI47_03580 0.53 +1.2 747,936 - IAI47_03580 0.58 +0.6 747,936 - IAI47_03580 0.58 -1.5 748,055 + IAI47_03580 0.68 -0.5 748,055 + IAI47_03580 0.68 -1.1 748,056 - IAI47_03580 0.68 -0.9 748,056 - IAI47_03580 0.68 -2.5 748,061 + IAI47_03580 0.69 -2.0 748,061 + IAI47_03580 0.69 -1.3 748,064 + IAI47_03580 0.69 -0.1 748,064 + IAI47_03580 0.69 -2.1 748,065 - IAI47_03580 0.69 +0.0 748,078 + IAI47_03580 0.70 -0.5
Or see this region's nucleotide sequence