Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03515 and IAI47_03520 overlap by 4 nucleotides IAI47_03520 and IAI47_03525 overlap by 8 nucleotides IAI47_03525 and IAI47_03530 overlap by 1 nucleotides IAI47_03530 and IAI47_03535 are separated by 91 nucleotides
IAI47_03515: IAI47_03515 - hemin-degrading factor, at 733,849 to 734,880
_03515
IAI47_03520: IAI47_03520 - hemin ABC transporter substrate-binding protein, at 734,877 to 735,698
_03520
IAI47_03525: IAI47_03525 - iron ABC transporter permease, at 735,691 to 736,689
_03525
IAI47_03530: IAI47_03530 - heme ABC transporter ATP-binding protein, at 736,689 to 737,465
_03530
IAI47_03535: IAI47_03535 - CinA family protein, at 737,557 to 738,054
_03535
Position (kb) 735
736
737 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 734.714 kb on + strand, within IAI47_03515 at 734.745 kb on + strand, within IAI47_03515 at 734.745 kb on + strand, within IAI47_03515 at 734.745 kb on + strand, within IAI47_03515 at 734.746 kb on - strand, within IAI47_03515 at 734.794 kb on + strand at 734.794 kb on + strand at 734.795 kb on - strand at 734.815 kb on - strand at 734.896 kb on + strand at 734.896 kb on + strand at 734.897 kb on - strand at 734.969 kb on + strand, within IAI47_03520 at 734.969 kb on + strand, within IAI47_03520 at 734.969 kb on + strand, within IAI47_03520 at 734.969 kb on + strand, within IAI47_03520 at 734.969 kb on + strand, within IAI47_03520 at 734.969 kb on + strand, within IAI47_03520 at 734.969 kb on + strand, within IAI47_03520 at 734.969 kb on + strand, within IAI47_03520 at 734.969 kb on + strand, within IAI47_03520 at 734.970 kb on - strand, within IAI47_03520 at 734.970 kb on - strand, within IAI47_03520 at 734.970 kb on - strand, within IAI47_03520 at 734.970 kb on - strand, within IAI47_03520 at 734.970 kb on - strand, within IAI47_03520 at 734.970 kb on - strand, within IAI47_03520 at 734.970 kb on - strand, within IAI47_03520 at 734.970 kb on - strand, within IAI47_03520 at 734.973 kb on + strand, within IAI47_03520 at 734.973 kb on + strand, within IAI47_03520 at 734.974 kb on - strand, within IAI47_03520 at 734.974 kb on - strand, within IAI47_03520 at 734.974 kb on - strand, within IAI47_03520 at 734.974 kb on - strand, within IAI47_03520 at 734.974 kb on - strand, within IAI47_03520 at 734.974 kb on - strand, within IAI47_03520 at 734.998 kb on + strand, within IAI47_03520 at 734.999 kb on - strand, within IAI47_03520 at 734.999 kb on - strand, within IAI47_03520 at 734.999 kb on - strand, within IAI47_03520 at 735.060 kb on + strand, within IAI47_03520 at 735.060 kb on + strand, within IAI47_03520 at 735.061 kb on - strand, within IAI47_03520 at 735.061 kb on - strand, within IAI47_03520 at 735.061 kb on - strand, within IAI47_03520 at 735.061 kb on - strand, within IAI47_03520 at 735.061 kb on - strand, within IAI47_03520 at 735.062 kb on + strand, within IAI47_03520 at 735.062 kb on + strand, within IAI47_03520 at 735.062 kb on + strand, within IAI47_03520 at 735.062 kb on + strand, within IAI47_03520 at 735.062 kb on + strand, within IAI47_03520 at 735.062 kb on + strand, within IAI47_03520 at 735.062 kb on + strand, within IAI47_03520 at 735.062 kb on + strand, within IAI47_03520 at 735.062 kb on + strand, within IAI47_03520 at 735.062 kb on + strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.063 kb on - strand, within IAI47_03520 at 735.228 kb on - strand, within IAI47_03520 at 735.228 kb on - strand, within IAI47_03520 at 735.339 kb on + strand, within IAI47_03520 at 735.339 kb on + strand, within IAI47_03520 at 735.339 kb on + strand, within IAI47_03520 at 735.339 kb on + strand, within IAI47_03520 at 735.339 kb on + strand, within IAI47_03520 at 735.339 kb on + strand, within IAI47_03520 at 735.339 kb on + strand, within IAI47_03520 at 735.339 kb on + strand, within IAI47_03520 at 735.340 kb on - strand, within IAI47_03520 at 735.340 kb on - strand, within IAI47_03520 at 735.340 kb on - strand, within IAI47_03520 at 735.340 kb on - strand, within IAI47_03520 at 735.340 kb on - strand, within IAI47_03520 at 735.340 kb on - strand, within IAI47_03520 at 735.340 kb on - strand, within IAI47_03520 at 735.432 kb on - strand, within IAI47_03520 at 735.432 kb on - strand, within IAI47_03520 at 735.432 kb on - strand, within IAI47_03520 at 735.450 kb on + strand, within IAI47_03520 at 735.450 kb on + strand, within IAI47_03520 at 735.450 kb on + strand, within IAI47_03520 at 735.451 kb on - strand, within IAI47_03520 at 735.503 kb on - strand, within IAI47_03520 at 735.557 kb on - strand, within IAI47_03520 at 735.641 kb on + strand at 735.642 kb on - strand at 735.642 kb on - strand at 735.642 kb on - strand at 735.642 kb on - strand at 735.696 kb on + strand at 735.697 kb on - strand at 735.703 kb on - strand at 735.703 kb on - strand at 735.800 kb on + strand, within IAI47_03525 at 735.825 kb on + strand, within IAI47_03525 at 735.825 kb on + strand, within IAI47_03525 at 735.825 kb on + strand, within IAI47_03525 at 735.826 kb on - strand, within IAI47_03525 at 735.826 kb on - strand, within IAI47_03525 at 735.826 kb on - strand, within IAI47_03525 at 735.867 kb on - strand, within IAI47_03525 at 735.867 kb on - strand, within IAI47_03525 at 735.867 kb on - strand, within IAI47_03525 at 735.931 kb on - strand, within IAI47_03525 at 736.002 kb on + strand, within IAI47_03525 at 736.002 kb on + strand, within IAI47_03525 at 736.031 kb on + strand, within IAI47_03525 at 736.032 kb on - strand, within IAI47_03525 at 736.032 kb on - strand, within IAI47_03525 at 736.032 kb on - strand, within IAI47_03525 at 736.032 kb on - strand, within IAI47_03525 at 736.032 kb on - strand, within IAI47_03525 at 736.032 kb on - strand, within IAI47_03525 at 736.040 kb on + strand, within IAI47_03525 at 736.144 kb on - strand, within IAI47_03525 at 736.153 kb on - strand, within IAI47_03525 at 736.175 kb on + strand, within IAI47_03525 at 736.310 kb on + strand, within IAI47_03525 at 736.332 kb on + strand, within IAI47_03525 at 736.366 kb on + strand, within IAI47_03525 at 736.366 kb on + strand, within IAI47_03525 at 736.366 kb on + strand, within IAI47_03525 at 736.367 kb on - strand, within IAI47_03525 at 736.367 kb on - strand, within IAI47_03525 at 736.367 kb on - strand, within IAI47_03525 at 736.367 kb on - strand, within IAI47_03525 at 736.390 kb on - strand, within IAI47_03525 at 736.390 kb on - strand, within IAI47_03525 at 736.431 kb on + strand, within IAI47_03525 at 736.432 kb on - strand, within IAI47_03525 at 736.432 kb on - strand, within IAI47_03525 at 736.432 kb on - strand, within IAI47_03525 at 736.551 kb on + strand, within IAI47_03525 at 736.551 kb on + strand, within IAI47_03525 at 736.551 kb on + strand, within IAI47_03525 at 736.552 kb on - strand, within IAI47_03525 at 736.552 kb on - strand, within IAI47_03525 at 736.620 kb on - strand at 736.783 kb on + strand, within IAI47_03530 at 736.812 kb on - strand, within IAI47_03530 at 736.822 kb on + strand, within IAI47_03530 at 736.822 kb on + strand, within IAI47_03530 at 736.823 kb on - strand, within IAI47_03530 at 737.234 kb on - strand, within IAI47_03530 at 737.270 kb on + strand, within IAI47_03530 at 737.270 kb on + strand, within IAI47_03530 at 737.271 kb on - strand, within IAI47_03530 at 737.278 kb on + strand, within IAI47_03530 at 737.278 kb on + strand, within IAI47_03530 at 737.278 kb on + strand, within IAI47_03530 at 737.278 kb on + strand, within IAI47_03530 at 737.278 kb on + strand, within IAI47_03530 at 737.278 kb on + strand, within IAI47_03530 at 737.279 kb on - strand, within IAI47_03530 at 737.279 kb on - strand, within IAI47_03530 at 737.279 kb on - strand, within IAI47_03530 at 737.279 kb on - strand, within IAI47_03530 at 737.279 kb on - strand, within IAI47_03530 at 737.279 kb on - strand, within IAI47_03530 at 737.279 kb on - strand, within IAI47_03530 at 737.279 kb on - strand, within IAI47_03530 at 737.288 kb on + strand, within IAI47_03530 at 737.288 kb on + strand, within IAI47_03530 at 737.289 kb on - strand, within IAI47_03530 at 737.317 kb on + strand, within IAI47_03530 at 737.317 kb on + strand, within IAI47_03530 at 737.318 kb on - strand, within IAI47_03530 at 737.318 kb on - strand, within IAI47_03530 at 737.318 kb on - strand, within IAI47_03530 at 737.397 kb on + strand at 737.417 kb on - strand at 737.460 kb on - strand at 737.464 kb on - strand at 737.520 kb on + strand at 737.522 kb on + strand at 737.522 kb on + strand at 737.522 kb on + strand at 737.522 kb on + strand at 737.522 kb on + strand at 737.523 kb on - strand at 737.555 kb on + strand at 737.555 kb on + strand at 737.555 kb on + strand at 737.556 kb on - strand at 737.556 kb on - strand at 737.598 kb on + strand at 737.598 kb on + strand at 737.599 kb on - strand at 737.603 kb on + strand at 737.603 kb on + strand at 737.603 kb on + strand at 737.604 kb on - strand at 737.604 kb on - strand at 737.644 kb on - strand, within IAI47_03535 at 737.661 kb on + strand, within IAI47_03535 at 737.661 kb on + strand, within IAI47_03535 at 737.661 kb on + strand, within IAI47_03535 at 737.662 kb on - strand, within IAI47_03535 at 737.662 kb on - strand, within IAI47_03535 at 737.662 kb on - strand, within IAI47_03535 at 737.662 kb on - strand, within IAI47_03535
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 734,714 + IAI47_03515 0.84 -0.3 734,745 + IAI47_03515 0.87 +0.7 734,745 + IAI47_03515 0.87 -1.9 734,745 + IAI47_03515 0.87 -1.2 734,746 - IAI47_03515 0.87 -0.8 734,794 + -1.4 734,794 + +1.3 734,795 - -1.3 734,815 - +0.1 734,896 + -0.1 734,896 + +1.0 734,897 - -0.4 734,969 + IAI47_03520 0.11 +1.3 734,969 + IAI47_03520 0.11 +2.0 734,969 + IAI47_03520 0.11 -1.0 734,969 + IAI47_03520 0.11 -0.7 734,969 + IAI47_03520 0.11 +1.1 734,969 + IAI47_03520 0.11 -0.8 734,969 + IAI47_03520 0.11 -1.8 734,969 + IAI47_03520 0.11 -0.5 734,969 + IAI47_03520 0.11 +0.4 734,970 - IAI47_03520 0.11 -0.7 734,970 - IAI47_03520 0.11 -0.3 734,970 - IAI47_03520 0.11 +0.9 734,970 - IAI47_03520 0.11 +0.7 734,970 - IAI47_03520 0.11 +0.3 734,970 - IAI47_03520 0.11 -0.4 734,970 - IAI47_03520 0.11 -0.6 734,970 - IAI47_03520 0.11 +1.1 734,973 + IAI47_03520 0.12 -1.5 734,973 + IAI47_03520 0.12 -0.8 734,974 - IAI47_03520 0.12 -0.8 734,974 - IAI47_03520 0.12 -0.2 734,974 - IAI47_03520 0.12 +0.8 734,974 - IAI47_03520 0.12 -0.3 734,974 - IAI47_03520 0.12 -0.7 734,974 - IAI47_03520 0.12 -0.3 734,998 + IAI47_03520 0.15 +1.3 734,999 - IAI47_03520 0.15 -1.0 734,999 - IAI47_03520 0.15 -1.0 734,999 - IAI47_03520 0.15 +0.3 735,060 + IAI47_03520 0.22 -0.6 735,060 + IAI47_03520 0.22 +1.9 735,061 - IAI47_03520 0.22 +1.8 735,061 - IAI47_03520 0.22 +0.8 735,061 - IAI47_03520 0.22 -0.1 735,061 - IAI47_03520 0.22 +1.9 735,061 - IAI47_03520 0.22 +1.5 735,062 + IAI47_03520 0.23 +1.3 735,062 + IAI47_03520 0.23 -1.3 735,062 + IAI47_03520 0.23 -1.1 735,062 + IAI47_03520 0.23 -0.1 735,062 + IAI47_03520 0.23 -1.6 735,062 + IAI47_03520 0.23 +4.1 735,062 + IAI47_03520 0.23 +1.0 735,062 + IAI47_03520 0.23 +0.7 735,062 + IAI47_03520 0.23 +0.5 735,062 + IAI47_03520 0.23 -1.8 735,063 - IAI47_03520 0.23 -0.3 735,063 - IAI47_03520 0.23 +0.4 735,063 - IAI47_03520 0.23 -1.5 735,063 - IAI47_03520 0.23 +0.1 735,063 - IAI47_03520 0.23 -1.8 735,063 - IAI47_03520 0.23 +0.6 735,063 - IAI47_03520 0.23 -0.1 735,063 - IAI47_03520 0.23 +0.3 735,063 - IAI47_03520 0.23 +0.7 735,063 - IAI47_03520 0.23 +0.8 735,063 - IAI47_03520 0.23 -0.6 735,063 - IAI47_03520 0.23 -1.1 735,228 - IAI47_03520 0.43 -3.2 735,228 - IAI47_03520 0.43 -0.7 735,339 + IAI47_03520 0.56 -1.0 735,339 + IAI47_03520 0.56 -0.3 735,339 + IAI47_03520 0.56 -0.0 735,339 + IAI47_03520 0.56 +0.1 735,339 + IAI47_03520 0.56 +1.4 735,339 + IAI47_03520 0.56 +0.8 735,339 + IAI47_03520 0.56 -0.1 735,339 + IAI47_03520 0.56 +1.7 735,340 - IAI47_03520 0.56 +1.2 735,340 - IAI47_03520 0.56 +0.1 735,340 - IAI47_03520 0.56 +1.1 735,340 - IAI47_03520 0.56 +1.0 735,340 - IAI47_03520 0.56 +0.1 735,340 - IAI47_03520 0.56 -1.1 735,340 - IAI47_03520 0.56 +1.6 735,432 - IAI47_03520 0.68 -0.9 735,432 - IAI47_03520 0.68 +1.9 735,432 - IAI47_03520 0.68 +1.7 735,450 + IAI47_03520 0.70 +0.0 735,450 + IAI47_03520 0.70 +1.3 735,450 + IAI47_03520 0.70 +0.7 735,451 - IAI47_03520 0.70 +1.9 735,503 - IAI47_03520 0.76 +1.0 735,557 - IAI47_03520 0.83 -1.0 735,641 + +1.0 735,642 - -0.1 735,642 - +0.4 735,642 - +0.7 735,642 - -0.9 735,696 + -0.7 735,697 - +0.3 735,703 - +0.0 735,703 - -0.2 735,800 + IAI47_03525 0.11 +0.6 735,825 + IAI47_03525 0.13 +2.0 735,825 + IAI47_03525 0.13 -1.1 735,825 + IAI47_03525 0.13 -0.8 735,826 - IAI47_03525 0.14 +0.6 735,826 - IAI47_03525 0.14 -1.9 735,826 - IAI47_03525 0.14 -1.6 735,867 - IAI47_03525 0.18 -0.8 735,867 - IAI47_03525 0.18 +1.5 735,867 - IAI47_03525 0.18 +3.9 735,931 - IAI47_03525 0.24 -0.2 736,002 + IAI47_03525 0.31 +0.2 736,002 + IAI47_03525 0.31 -3.3 736,031 + IAI47_03525 0.34 +3.1 736,032 - IAI47_03525 0.34 -1.0 736,032 - IAI47_03525 0.34 -0.5 736,032 - IAI47_03525 0.34 -1.2 736,032 - IAI47_03525 0.34 +1.3 736,032 - IAI47_03525 0.34 +3.2 736,032 - IAI47_03525 0.34 -0.9 736,040 + IAI47_03525 0.35 +4.4 736,144 - IAI47_03525 0.45 -1.2 736,153 - IAI47_03525 0.46 +0.5 736,175 + IAI47_03525 0.48 +1.1 736,310 + IAI47_03525 0.62 +1.4 736,332 + IAI47_03525 0.64 -1.0 736,366 + IAI47_03525 0.68 +0.7 736,366 + IAI47_03525 0.68 +0.2 736,366 + IAI47_03525 0.68 +0.3 736,367 - IAI47_03525 0.68 -0.7 736,367 - IAI47_03525 0.68 -0.7 736,367 - IAI47_03525 0.68 -0.7 736,367 - IAI47_03525 0.68 -1.5 736,390 - IAI47_03525 0.70 +3.7 736,390 - IAI47_03525 0.70 +0.9 736,431 + IAI47_03525 0.74 +0.8 736,432 - IAI47_03525 0.74 +2.0 736,432 - IAI47_03525 0.74 -1.3 736,432 - IAI47_03525 0.74 -0.7 736,551 + IAI47_03525 0.86 +1.5 736,551 + IAI47_03525 0.86 +0.8 736,551 + IAI47_03525 0.86 +2.0 736,552 - IAI47_03525 0.86 +0.4 736,552 - IAI47_03525 0.86 -1.4 736,620 - -0.3 736,783 + IAI47_03530 0.12 +0.9 736,812 - IAI47_03530 0.16 +2.2 736,822 + IAI47_03530 0.17 -0.8 736,822 + IAI47_03530 0.17 -1.4 736,823 - IAI47_03530 0.17 -0.4 737,234 - IAI47_03530 0.70 +2.3 737,270 + IAI47_03530 0.75 +2.9 737,270 + IAI47_03530 0.75 +0.4 737,271 - IAI47_03530 0.75 -0.4 737,278 + IAI47_03530 0.76 -1.4 737,278 + IAI47_03530 0.76 -1.2 737,278 + IAI47_03530 0.76 -0.2 737,278 + IAI47_03530 0.76 -2.1 737,278 + IAI47_03530 0.76 +1.5 737,278 + IAI47_03530 0.76 +3.7 737,279 - IAI47_03530 0.76 +1.7 737,279 - IAI47_03530 0.76 +1.3 737,279 - IAI47_03530 0.76 +1.6 737,279 - IAI47_03530 0.76 +0.8 737,279 - IAI47_03530 0.76 -0.3 737,279 - IAI47_03530 0.76 +0.7 737,279 - IAI47_03530 0.76 -0.6 737,279 - IAI47_03530 0.76 +0.9 737,288 + IAI47_03530 0.77 +0.6 737,288 + IAI47_03530 0.77 -0.6 737,289 - IAI47_03530 0.77 +0.7 737,317 + IAI47_03530 0.81 +2.3 737,317 + IAI47_03530 0.81 +1.6 737,318 - IAI47_03530 0.81 +1.9 737,318 - IAI47_03530 0.81 +1.3 737,318 - IAI47_03530 0.81 +0.2 737,397 + -0.1 737,417 - +0.1 737,460 - +1.3 737,464 - +1.9 737,520 + -0.5 737,522 + -2.8 737,522 + +0.3 737,522 + +1.0 737,522 + -1.3 737,522 + +0.9 737,523 - +2.1 737,555 + +0.3 737,555 + -0.9 737,555 + +0.2 737,556 - +0.6 737,556 - -1.3 737,598 + -1.0 737,598 + +0.0 737,599 - +1.0 737,603 + -1.5 737,603 + +0.7 737,603 + +1.3 737,604 - +0.9 737,604 - -1.0 737,644 - IAI47_03535 0.17 +0.6 737,661 + IAI47_03535 0.21 -1.7 737,661 + IAI47_03535 0.21 -0.5 737,661 + IAI47_03535 0.21 +0.8 737,662 - IAI47_03535 0.21 +0.3 737,662 - IAI47_03535 0.21 -0.1 737,662 - IAI47_03535 0.21 +0.9 737,662 - IAI47_03535 0.21 -0.2
Or see this region's nucleotide sequence