Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02005 and IAI47_02010 overlap by 4 nucleotides IAI47_02010 and IAI47_02015 overlap by 4 nucleotides IAI47_02015 and IAI47_02020 are separated by 30 nucleotides
IAI47_02005: IAI47_02005 - taurine ABC transporter ATP-binding subunit, at 436,382 to 437,149
_02005
IAI47_02010: IAI47_02010 - taurine ABC transporter permease TauC, at 437,146 to 437,973
_02010
IAI47_02015: IAI47_02015 - taurine dioxygenase, at 437,970 to 438,809
_02015
IAI47_02020: IAI47_02020 - ABC transporter ATP-binding protein, at 438,840 to 440,744
_02020
Position (kb) 437
438
439 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 437.090 kb on - strand at 437.105 kb on + strand at 437.105 kb on + strand at 437.105 kb on + strand at 437.105 kb on + strand at 437.105 kb on + strand at 437.106 kb on - strand at 437.106 kb on - strand at 437.106 kb on - strand at 437.106 kb on - strand at 437.121 kb on + strand at 437.122 kb on - strand at 437.122 kb on - strand at 437.358 kb on + strand, within IAI47_02010 at 437.358 kb on + strand, within IAI47_02010 at 437.358 kb on + strand, within IAI47_02010 at 437.359 kb on - strand, within IAI47_02010 at 437.359 kb on - strand, within IAI47_02010 at 437.359 kb on - strand, within IAI47_02010 at 437.474 kb on + strand, within IAI47_02010 at 437.509 kb on + strand, within IAI47_02010 at 437.509 kb on + strand, within IAI47_02010 at 437.534 kb on - strand, within IAI47_02010 at 437.534 kb on - strand, within IAI47_02010 at 437.534 kb on - strand, within IAI47_02010 at 437.534 kb on - strand, within IAI47_02010 at 437.534 kb on - strand, within IAI47_02010 at 437.534 kb on - strand, within IAI47_02010 at 437.534 kb on - strand, within IAI47_02010 at 437.643 kb on + strand, within IAI47_02010 at 437.644 kb on - strand, within IAI47_02010 at 437.644 kb on - strand, within IAI47_02010 at 437.657 kb on + strand, within IAI47_02010 at 437.658 kb on - strand, within IAI47_02010 at 437.658 kb on - strand, within IAI47_02010 at 437.688 kb on + strand, within IAI47_02010 at 437.689 kb on - strand, within IAI47_02010 at 437.830 kb on - strand, within IAI47_02010 at 437.830 kb on - strand, within IAI47_02010 at 437.898 kb on + strand at 437.907 kb on + strand at 437.907 kb on + strand at 437.908 kb on - strand at 437.912 kb on + strand at 437.912 kb on + strand at 437.912 kb on + strand at 437.913 kb on - strand at 437.913 kb on - strand at 438.006 kb on + strand at 438.006 kb on + strand at 438.006 kb on + strand at 438.006 kb on + strand at 438.006 kb on + strand at 438.006 kb on + strand at 438.006 kb on + strand at 438.006 kb on + strand at 438.006 kb on + strand at 438.006 kb on + strand at 438.006 kb on + strand at 438.006 kb on + strand at 438.006 kb on + strand at 438.006 kb on + strand at 438.007 kb on - strand at 438.007 kb on - strand at 438.007 kb on - strand at 438.007 kb on - strand at 438.007 kb on - strand at 438.007 kb on - strand at 438.007 kb on - strand at 438.010 kb on + strand at 438.010 kb on + strand at 438.010 kb on + strand at 438.010 kb on + strand at 438.010 kb on + strand at 438.011 kb on - strand at 438.011 kb on - strand at 438.075 kb on + strand, within IAI47_02015 at 438.075 kb on + strand at 438.075 kb on + strand, within IAI47_02015 at 438.075 kb on + strand, within IAI47_02015 at 438.075 kb on + strand, within IAI47_02015 at 438.075 kb on + strand, within IAI47_02015 at 438.075 kb on + strand, within IAI47_02015 at 438.076 kb on - strand, within IAI47_02015 at 438.076 kb on - strand, within IAI47_02015 at 438.076 kb on - strand, within IAI47_02015 at 438.076 kb on - strand, within IAI47_02015 at 438.076 kb on - strand, within IAI47_02015 at 438.076 kb on - strand, within IAI47_02015 at 438.076 kb on - strand, within IAI47_02015 at 438.076 kb on - strand, within IAI47_02015 at 438.173 kb on + strand at 438.173 kb on + strand, within IAI47_02015 at 438.173 kb on + strand, within IAI47_02015 at 438.174 kb on - strand, within IAI47_02015 at 438.176 kb on - strand, within IAI47_02015 at 438.187 kb on - strand, within IAI47_02015 at 438.187 kb on - strand, within IAI47_02015 at 438.215 kb on + strand, within IAI47_02015 at 438.215 kb on + strand, within IAI47_02015 at 438.215 kb on + strand, within IAI47_02015 at 438.215 kb on + strand, within IAI47_02015 at 438.216 kb on - strand, within IAI47_02015 at 438.239 kb on + strand, within IAI47_02015 at 438.240 kb on - strand, within IAI47_02015 at 438.281 kb on + strand, within IAI47_02015 at 438.373 kb on - strand, within IAI47_02015 at 438.395 kb on + strand, within IAI47_02015 at 438.453 kb on + strand, within IAI47_02015 at 438.454 kb on - strand, within IAI47_02015 at 438.454 kb on - strand, within IAI47_02015 at 438.454 kb on - strand, within IAI47_02015 at 438.455 kb on + strand, within IAI47_02015 at 438.455 kb on + strand, within IAI47_02015 at 438.455 kb on + strand, within IAI47_02015 at 438.455 kb on + strand, within IAI47_02015 at 438.455 kb on + strand, within IAI47_02015 at 438.455 kb on + strand, within IAI47_02015 at 438.455 kb on + strand, within IAI47_02015 at 438.455 kb on + strand, within IAI47_02015 at 438.455 kb on + strand, within IAI47_02015 at 438.455 kb on + strand, within IAI47_02015 at 438.455 kb on + strand, within IAI47_02015 at 438.455 kb on + strand, within IAI47_02015 at 438.455 kb on + strand, within IAI47_02015 at 438.455 kb on + strand, within IAI47_02015 at 438.455 kb on + strand, within IAI47_02015 at 438.455 kb on + strand, within IAI47_02015 at 438.455 kb on + strand, within IAI47_02015 at 438.455 kb on + strand, within IAI47_02015 at 438.455 kb on + strand, within IAI47_02015 at 438.455 kb on + strand, within IAI47_02015 at 438.455 kb on + strand, within IAI47_02015 at 438.455 kb on + strand, within IAI47_02015 at 438.456 kb on - strand, within IAI47_02015 at 438.456 kb on - strand, within IAI47_02015 at 438.456 kb on - strand, within IAI47_02015 at 438.456 kb on - strand, within IAI47_02015 at 438.456 kb on - strand, within IAI47_02015 at 438.456 kb on - strand, within IAI47_02015 at 438.456 kb on - strand, within IAI47_02015 at 438.456 kb on - strand, within IAI47_02015 at 438.456 kb on - strand, within IAI47_02015 at 438.456 kb on - strand, within IAI47_02015 at 438.456 kb on - strand, within IAI47_02015 at 438.456 kb on - strand, within IAI47_02015 at 438.456 kb on - strand, within IAI47_02015 at 438.456 kb on - strand, within IAI47_02015 at 438.456 kb on - strand, within IAI47_02015 at 438.456 kb on - strand, within IAI47_02015 at 438.456 kb on - strand, within IAI47_02015 at 438.459 kb on + strand, within IAI47_02015 at 438.460 kb on - strand, within IAI47_02015 at 438.460 kb on - strand, within IAI47_02015 at 438.460 kb on - strand, within IAI47_02015 at 438.656 kb on + strand, within IAI47_02015 at 438.708 kb on - strand, within IAI47_02015 at 438.716 kb on + strand, within IAI47_02015 at 438.717 kb on - strand, within IAI47_02015 at 438.735 kb on + strand at 438.735 kb on + strand at 438.735 kb on + strand at 438.735 kb on + strand at 438.736 kb on - strand at 438.736 kb on - strand at 438.736 kb on - strand at 438.736 kb on - strand at 438.736 kb on - strand at 438.736 kb on - strand at 438.736 kb on - strand at 438.750 kb on + strand at 438.750 kb on + strand at 438.750 kb on + strand at 438.751 kb on - strand at 438.788 kb on - strand at 438.841 kb on + strand at 438.851 kb on + strand at 438.851 kb on + strand at 438.851 kb on + strand at 438.852 kb on - strand at 438.852 kb on - strand at 438.914 kb on + strand at 438.914 kb on + strand at 438.915 kb on - strand at 438.970 kb on + strand at 438.971 kb on - strand at 439.050 kb on + strand, within IAI47_02020 at 439.050 kb on + strand, within IAI47_02020 at 439.050 kb on + strand, within IAI47_02020 at 439.050 kb on + strand, within IAI47_02020 at 439.050 kb on + strand, within IAI47_02020 at 439.051 kb on - strand, within IAI47_02020 at 439.051 kb on - strand, within IAI47_02020 at 439.112 kb on + strand, within IAI47_02020 at 439.112 kb on + strand, within IAI47_02020 at 439.112 kb on + strand, within IAI47_02020 at 439.130 kb on + strand, within IAI47_02020 at 439.130 kb on + strand, within IAI47_02020 at 439.201 kb on + strand, within IAI47_02020 at 439.202 kb on - strand, within IAI47_02020 at 439.202 kb on - strand, within IAI47_02020 at 439.252 kb on + strand, within IAI47_02020 at 439.252 kb on + strand, within IAI47_02020 at 439.252 kb on + strand, within IAI47_02020 at 439.253 kb on - strand, within IAI47_02020 at 439.253 kb on - strand, within IAI47_02020 at 439.253 kb on - strand, within IAI47_02020 at 439.253 kb on - strand, within IAI47_02020 at 439.352 kb on + strand, within IAI47_02020 at 439.352 kb on + strand, within IAI47_02020 at 439.370 kb on + strand, within IAI47_02020 at 439.370 kb on + strand, within IAI47_02020 at 439.370 kb on + strand, within IAI47_02020 at 439.370 kb on + strand, within IAI47_02020 at 439.370 kb on + strand, within IAI47_02020 at 439.371 kb on - strand, within IAI47_02020 at 439.371 kb on - strand, within IAI47_02020 at 439.507 kb on + strand, within IAI47_02020 at 439.507 kb on + strand, within IAI47_02020 at 439.508 kb on - strand, within IAI47_02020 at 439.585 kb on + strand, within IAI47_02020 at 439.585 kb on + strand, within IAI47_02020 at 439.586 kb on - strand, within IAI47_02020 at 439.586 kb on - strand, within IAI47_02020 at 439.609 kb on + strand, within IAI47_02020 at 439.609 kb on + strand, within IAI47_02020 at 439.610 kb on - strand, within IAI47_02020 at 439.610 kb on - strand, within IAI47_02020 at 439.610 kb on - strand, within IAI47_02020 at 439.679 kb on + strand, within IAI47_02020 at 439.679 kb on + strand, within IAI47_02020 at 439.679 kb on + strand, within IAI47_02020 at 439.695 kb on - strand, within IAI47_02020 at 439.706 kb on + strand, within IAI47_02020 at 439.780 kb on + strand, within IAI47_02020 at 439.781 kb on - strand, within IAI47_02020
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 437,090 - -0.4 437,105 + +1.1 437,105 + -0.0 437,105 + -0.3 437,105 + +0.8 437,105 + -1.9 437,106 - -1.8 437,106 - +1.4 437,106 - +0.9 437,106 - +0.4 437,121 + -0.6 437,122 - +1.2 437,122 - +1.2 437,358 + IAI47_02010 0.26 +2.1 437,358 + IAI47_02010 0.26 -0.8 437,358 + IAI47_02010 0.26 +2.5 437,359 - IAI47_02010 0.26 -0.8 437,359 - IAI47_02010 0.26 -2.2 437,359 - IAI47_02010 0.26 +0.2 437,474 + IAI47_02010 0.40 +0.7 437,509 + IAI47_02010 0.44 -1.6 437,509 + IAI47_02010 0.44 +1.8 437,534 - IAI47_02010 0.47 +1.2 437,534 - IAI47_02010 0.47 +0.4 437,534 - IAI47_02010 0.47 -0.8 437,534 - IAI47_02010 0.47 -2.3 437,534 - IAI47_02010 0.47 +0.2 437,534 - IAI47_02010 0.47 -0.1 437,534 - IAI47_02010 0.47 -2.5 437,643 + IAI47_02010 0.60 +1.8 437,644 - IAI47_02010 0.60 +1.6 437,644 - IAI47_02010 0.60 +1.3 437,657 + IAI47_02010 0.62 -0.4 437,658 - IAI47_02010 0.62 +1.0 437,658 - IAI47_02010 0.62 +0.9 437,688 + IAI47_02010 0.65 +1.1 437,689 - IAI47_02010 0.66 -0.1 437,830 - IAI47_02010 0.83 +2.3 437,830 - IAI47_02010 0.83 +0.2 437,898 + +2.2 437,907 + -1.2 437,907 + +0.5 437,908 - +3.0 437,912 + +0.6 437,912 + -0.8 437,912 + +0.5 437,913 - +0.9 437,913 - +0.4 438,006 + -0.5 438,006 + +1.0 438,006 + -0.9 438,006 + -0.2 438,006 + -0.9 438,006 + +1.5 438,006 + +1.2 438,006 + -0.0 438,006 + +0.2 438,006 + +0.2 438,006 + +0.2 438,006 + +2.3 438,006 + -0.5 438,006 + -2.2 438,007 - -2.2 438,007 - -0.2 438,007 - +0.4 438,007 - -0.6 438,007 - -0.1 438,007 - +0.0 438,007 - -0.7 438,010 + +1.5 438,010 + +1.5 438,010 + +2.0 438,010 + -0.8 438,010 + -0.3 438,011 - +0.2 438,011 - -0.7 438,075 + IAI47_02015 0.12 +1.3 438,075 + +0.1 438,075 + IAI47_02015 0.12 -1.3 438,075 + IAI47_02015 0.12 +0.0 438,075 + IAI47_02015 0.12 +1.8 438,075 + IAI47_02015 0.12 +0.2 438,075 + IAI47_02015 0.12 +0.1 438,076 - IAI47_02015 0.13 -1.8 438,076 - IAI47_02015 0.13 +2.3 438,076 - IAI47_02015 0.13 -0.3 438,076 - IAI47_02015 0.13 +0.7 438,076 - IAI47_02015 0.13 +0.4 438,076 - IAI47_02015 0.13 +2.9 438,076 - IAI47_02015 0.13 +0.6 438,076 - IAI47_02015 0.13 +1.6 438,173 + -0.3 438,173 + IAI47_02015 0.24 +1.8 438,173 + IAI47_02015 0.24 -1.3 438,174 - IAI47_02015 0.24 -0.7 438,176 - IAI47_02015 0.25 +2.8 438,187 - IAI47_02015 0.26 -0.2 438,187 - IAI47_02015 0.26 -0.2 438,215 + IAI47_02015 0.29 +0.3 438,215 + IAI47_02015 0.29 -0.2 438,215 + IAI47_02015 0.29 +1.0 438,215 + IAI47_02015 0.29 +0.7 438,216 - IAI47_02015 0.29 -1.4 438,239 + IAI47_02015 0.32 -1.1 438,240 - IAI47_02015 0.32 +1.2 438,281 + IAI47_02015 0.37 -0.3 438,373 - IAI47_02015 0.48 -1.8 438,395 + IAI47_02015 0.51 -1.5 438,453 + IAI47_02015 0.57 +0.3 438,454 - IAI47_02015 0.58 -1.9 438,454 - IAI47_02015 0.58 +0.2 438,454 - IAI47_02015 0.58 +4.5 438,455 + IAI47_02015 0.58 +1.4 438,455 + IAI47_02015 0.58 +0.2 438,455 + IAI47_02015 0.58 -0.1 438,455 + IAI47_02015 0.58 -1.0 438,455 + IAI47_02015 0.58 -0.3 438,455 + IAI47_02015 0.58 +0.2 438,455 + IAI47_02015 0.58 +1.1 438,455 + IAI47_02015 0.58 -0.8 438,455 + IAI47_02015 0.58 -0.5 438,455 + IAI47_02015 0.58 -3.7 438,455 + IAI47_02015 0.58 +1.8 438,455 + IAI47_02015 0.58 +1.4 438,455 + IAI47_02015 0.58 -1.0 438,455 + IAI47_02015 0.58 +0.6 438,455 + IAI47_02015 0.58 -0.3 438,455 + IAI47_02015 0.58 +0.3 438,455 + IAI47_02015 0.58 +0.8 438,455 + IAI47_02015 0.58 -0.1 438,455 + IAI47_02015 0.58 -0.2 438,455 + IAI47_02015 0.58 +0.9 438,455 + IAI47_02015 0.58 -0.2 438,455 + IAI47_02015 0.58 +0.0 438,456 - IAI47_02015 0.58 -0.1 438,456 - IAI47_02015 0.58 -2.0 438,456 - IAI47_02015 0.58 -0.3 438,456 - IAI47_02015 0.58 -0.5 438,456 - IAI47_02015 0.58 +0.2 438,456 - IAI47_02015 0.58 +2.4 438,456 - IAI47_02015 0.58 -1.9 438,456 - IAI47_02015 0.58 +0.3 438,456 - IAI47_02015 0.58 -0.5 438,456 - IAI47_02015 0.58 +3.0 438,456 - IAI47_02015 0.58 +1.6 438,456 - IAI47_02015 0.58 -1.8 438,456 - IAI47_02015 0.58 -0.7 438,456 - IAI47_02015 0.58 -2.6 438,456 - IAI47_02015 0.58 -0.4 438,456 - IAI47_02015 0.58 +1.2 438,456 - IAI47_02015 0.58 -0.2 438,459 + IAI47_02015 0.58 +0.6 438,460 - IAI47_02015 0.58 +1.2 438,460 - IAI47_02015 0.58 +0.2 438,460 - IAI47_02015 0.58 -0.1 438,656 + IAI47_02015 0.82 -0.7 438,708 - IAI47_02015 0.88 -0.1 438,716 + IAI47_02015 0.89 -0.1 438,717 - IAI47_02015 0.89 +0.2 438,735 + -2.3 438,735 + -0.2 438,735 + -0.8 438,735 + -1.9 438,736 - +0.9 438,736 - -1.3 438,736 - -1.8 438,736 - +0.4 438,736 - +1.7 438,736 - +1.7 438,736 - -2.4 438,750 + -0.8 438,750 + +2.5 438,750 + +1.3 438,751 - -0.1 438,788 - -1.1 438,841 + -1.5 438,851 + +0.7 438,851 + -0.6 438,851 + +0.4 438,852 - +0.1 438,852 - +0.2 438,914 + -0.9 438,914 + +1.5 438,915 - -2.1 438,970 + -0.1 438,971 - +2.1 439,050 + IAI47_02020 0.11 -0.1 439,050 + IAI47_02020 0.11 +1.5 439,050 + IAI47_02020 0.11 -1.2 439,050 + IAI47_02020 0.11 -1.2 439,050 + IAI47_02020 0.11 +0.7 439,051 - IAI47_02020 0.11 -0.3 439,051 - IAI47_02020 0.11 -0.5 439,112 + IAI47_02020 0.14 +0.1 439,112 + IAI47_02020 0.14 -1.6 439,112 + IAI47_02020 0.14 +0.5 439,130 + IAI47_02020 0.15 +0.1 439,130 + IAI47_02020 0.15 -0.7 439,201 + IAI47_02020 0.19 +1.5 439,202 - IAI47_02020 0.19 +1.1 439,202 - IAI47_02020 0.19 -1.6 439,252 + IAI47_02020 0.22 -0.2 439,252 + IAI47_02020 0.22 -0.3 439,252 + IAI47_02020 0.22 +0.7 439,253 - IAI47_02020 0.22 -0.3 439,253 - IAI47_02020 0.22 +0.6 439,253 - IAI47_02020 0.22 +4.2 439,253 - IAI47_02020 0.22 +0.2 439,352 + IAI47_02020 0.27 -0.6 439,352 + IAI47_02020 0.27 +1.8 439,370 + IAI47_02020 0.28 -1.1 439,370 + IAI47_02020 0.28 -2.5 439,370 + IAI47_02020 0.28 +0.3 439,370 + IAI47_02020 0.28 -0.4 439,370 + IAI47_02020 0.28 +1.3 439,371 - IAI47_02020 0.28 -0.2 439,371 - IAI47_02020 0.28 +0.2 439,507 + IAI47_02020 0.35 -2.1 439,507 + IAI47_02020 0.35 +0.5 439,508 - IAI47_02020 0.35 +1.9 439,585 + IAI47_02020 0.39 +0.7 439,585 + IAI47_02020 0.39 +0.8 439,586 - IAI47_02020 0.39 +1.7 439,586 - IAI47_02020 0.39 +1.4 439,609 + IAI47_02020 0.40 +0.5 439,609 + IAI47_02020 0.40 +0.9 439,610 - IAI47_02020 0.40 +0.4 439,610 - IAI47_02020 0.40 +1.6 439,610 - IAI47_02020 0.40 +0.3 439,679 + IAI47_02020 0.44 -0.3 439,679 + IAI47_02020 0.44 -1.1 439,679 + IAI47_02020 0.44 +0.1 439,695 - IAI47_02020 0.45 -0.8 439,706 + IAI47_02020 0.45 -0.2 439,780 + IAI47_02020 0.49 +4.7 439,781 - IAI47_02020 0.49 -1.3
Or see this region's nucleotide sequence