Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01530 and IAI47_01535 overlap by 11 nucleotides IAI47_01535 and IAI47_01540 are separated by 232 nucleotides IAI47_01540 and IAI47_01545 are separated by 5 nucleotides IAI47_01545 and IAI47_01550 overlap by 11 nucleotides
IAI47_01530: IAI47_01530 - DUF1145 family protein, at 333,570 to 333,842
_01530
IAI47_01535: IAI47_01535 - 16S rRNA (guanine(966)-N(2))-methyltransferase, at 333,832 to 334,431
_01535
IAI47_01540: IAI47_01540 - signal recognition particle-docking protein FtsY, at 334,664 to 336,364
_01540
IAI47_01545: IAI47_01545 - cell division ATP-binding protein FtsE, at 336,370 to 337,038
_01545
IAI47_01550: IAI47_01550 - cell division protein FtsX, at 337,028 to 338,011
_01550
Position (kb) 334
335
336
337 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 333.746 kb on + strand, within IAI47_01530 at 333.747 kb on - strand, within IAI47_01530 at 333.751 kb on + strand, within IAI47_01530 at 333.751 kb on + strand, within IAI47_01530 at 333.751 kb on + strand, within IAI47_01530 at 333.751 kb on + strand, within IAI47_01530 at 333.751 kb on + strand, within IAI47_01530 at 333.752 kb on - strand, within IAI47_01530 at 333.752 kb on - strand, within IAI47_01530 at 333.752 kb on - strand, within IAI47_01530 at 333.752 kb on - strand, within IAI47_01530 at 333.752 kb on - strand, within IAI47_01530 at 333.752 kb on - strand, within IAI47_01530 at 333.785 kb on + strand, within IAI47_01530 at 333.786 kb on - strand, within IAI47_01530 at 333.810 kb on + strand, within IAI47_01530 at 333.810 kb on + strand, within IAI47_01530 at 333.810 kb on + strand, within IAI47_01530 at 333.810 kb on + strand, within IAI47_01530 at 333.810 kb on + strand, within IAI47_01530 at 333.810 kb on + strand, within IAI47_01530 at 333.811 kb on - strand, within IAI47_01530 at 333.811 kb on - strand, within IAI47_01530 at 333.811 kb on - strand, within IAI47_01530 at 333.811 kb on - strand, within IAI47_01530 at 333.811 kb on - strand, within IAI47_01530 at 333.833 kb on + strand at 333.833 kb on + strand at 333.837 kb on + strand at 333.837 kb on + strand at 333.838 kb on - strand at 333.838 kb on - strand at 333.838 kb on - strand at 333.838 kb on - strand at 333.838 kb on - strand at 333.838 kb on - strand at 333.866 kb on + strand at 333.867 kb on - strand at 333.867 kb on - strand at 333.867 kb on - strand at 333.875 kb on + strand at 333.875 kb on + strand at 333.875 kb on + strand at 333.875 kb on + strand at 333.875 kb on + strand at 333.962 kb on + strand, within IAI47_01535 at 333.962 kb on + strand, within IAI47_01535 at 333.962 kb on + strand, within IAI47_01535 at 333.963 kb on - strand, within IAI47_01535 at 333.963 kb on - strand, within IAI47_01535 at 334.050 kb on + strand, within IAI47_01535 at 334.051 kb on - strand, within IAI47_01535 at 334.093 kb on + strand, within IAI47_01535 at 334.093 kb on + strand, within IAI47_01535 at 334.186 kb on + strand, within IAI47_01535 at 334.191 kb on + strand, within IAI47_01535 at 334.228 kb on + strand, within IAI47_01535 at 334.228 kb on + strand, within IAI47_01535 at 334.228 kb on + strand, within IAI47_01535 at 334.229 kb on - strand, within IAI47_01535 at 334.229 kb on - strand, within IAI47_01535 at 334.229 kb on - strand, within IAI47_01535 at 334.229 kb on - strand, within IAI47_01535 at 334.229 kb on - strand, within IAI47_01535 at 334.293 kb on + strand, within IAI47_01535 at 334.294 kb on - strand, within IAI47_01535 at 334.294 kb on - strand, within IAI47_01535 at 334.294 kb on - strand, within IAI47_01535 at 334.359 kb on + strand, within IAI47_01535 at 334.359 kb on + strand, within IAI47_01535 at 334.359 kb on + strand, within IAI47_01535 at 334.360 kb on - strand, within IAI47_01535 at 334.410 kb on + strand at 334.410 kb on + strand at 334.410 kb on + strand at 334.410 kb on + strand at 334.410 kb on + strand at 334.425 kb on + strand at 334.425 kb on + strand at 334.426 kb on - strand at 334.451 kb on - strand at 334.451 kb on - strand at 334.451 kb on - strand at 334.462 kb on + strand at 334.462 kb on + strand at 334.463 kb on - strand at 334.463 kb on - strand at 334.495 kb on + strand at 334.496 kb on - strand at 334.532 kb on + strand at 334.532 kb on + strand at 334.532 kb on + strand at 334.537 kb on + strand at 334.561 kb on + strand at 334.561 kb on + strand at 334.608 kb on + strand at 334.608 kb on + strand at 336.362 kb on + strand at 336.362 kb on + strand at 336.362 kb on + strand at 336.362 kb on + strand at 336.362 kb on + strand at 336.362 kb on + strand at 336.363 kb on - strand at 336.363 kb on - strand at 336.363 kb on - strand at 336.367 kb on - strand at 336.367 kb on - strand at 336.367 kb on - strand at 336.393 kb on + strand at 336.400 kb on + strand at 336.400 kb on + strand at 336.401 kb on - strand at 336.401 kb on - strand at 336.401 kb on - strand at 336.490 kb on - strand, within IAI47_01545 at 336.496 kb on - strand, within IAI47_01545 at 336.496 kb on - strand, within IAI47_01545 at 336.496 kb on - strand, within IAI47_01545 at 336.496 kb on - strand, within IAI47_01545 at 336.685 kb on - strand, within IAI47_01545 at 336.708 kb on + strand, within IAI47_01545 at 336.708 kb on + strand, within IAI47_01545 at 336.708 kb on + strand, within IAI47_01545 at 336.709 kb on - strand, within IAI47_01545 at 336.709 kb on - strand, within IAI47_01545 at 336.738 kb on + strand, within IAI47_01545 at 336.739 kb on - strand, within IAI47_01545 at 336.770 kb on - strand, within IAI47_01545 at 336.918 kb on + strand, within IAI47_01545 at 336.978 kb on + strand at 336.978 kb on + strand at 336.978 kb on + strand at 336.978 kb on + strand at 336.979 kb on - strand at 336.979 kb on - strand at 336.979 kb on - strand at 336.983 kb on - strand at 337.036 kb on + strand at 337.037 kb on - strand at 337.046 kb on - strand at 337.046 kb on - strand at 337.087 kb on + strand at 337.088 kb on - strand at 337.088 kb on - strand at 337.088 kb on - strand at 337.088 kb on - strand at 337.125 kb on - strand at 337.192 kb on + strand, within IAI47_01550 at 337.192 kb on + strand, within IAI47_01550 at 337.192 kb on + strand, within IAI47_01550 at 337.192 kb on + strand, within IAI47_01550 at 337.226 kb on + strand, within IAI47_01550 at 337.226 kb on + strand, within IAI47_01550 at 337.226 kb on + strand, within IAI47_01550 at 337.227 kb on - strand, within IAI47_01550 at 337.227 kb on - strand, within IAI47_01550 at 337.227 kb on - strand, within IAI47_01550 at 337.268 kb on + strand, within IAI47_01550 at 337.284 kb on + strand, within IAI47_01550 at 337.284 kb on + strand, within IAI47_01550 at 337.285 kb on - strand, within IAI47_01550 at 337.285 kb on - strand, within IAI47_01550 at 337.292 kb on + strand, within IAI47_01550 at 337.292 kb on + strand, within IAI47_01550 at 337.292 kb on + strand, within IAI47_01550 at 337.292 kb on + strand, within IAI47_01550 at 337.293 kb on - strand, within IAI47_01550 at 337.293 kb on - strand, within IAI47_01550
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 333,746 + IAI47_01530 0.64 -1.1 333,747 - IAI47_01530 0.65 -2.4 333,751 + IAI47_01530 0.66 -0.7 333,751 + IAI47_01530 0.66 -0.9 333,751 + IAI47_01530 0.66 -2.4 333,751 + IAI47_01530 0.66 -0.7 333,751 + IAI47_01530 0.66 +0.7 333,752 - IAI47_01530 0.67 -2.8 333,752 - IAI47_01530 0.67 -0.7 333,752 - IAI47_01530 0.67 -3.1 333,752 - IAI47_01530 0.67 +0.4 333,752 - IAI47_01530 0.67 -0.7 333,752 - IAI47_01530 0.67 +2.8 333,785 + IAI47_01530 0.79 -0.2 333,786 - IAI47_01530 0.79 -0.9 333,810 + IAI47_01530 0.88 +0.6 333,810 + IAI47_01530 0.88 -1.6 333,810 + IAI47_01530 0.88 -2.6 333,810 + IAI47_01530 0.88 -0.4 333,810 + IAI47_01530 0.88 -1.2 333,810 + IAI47_01530 0.88 -0.8 333,811 - IAI47_01530 0.88 -0.5 333,811 - IAI47_01530 0.88 -2.3 333,811 - IAI47_01530 0.88 +0.7 333,811 - IAI47_01530 0.88 +0.8 333,811 - IAI47_01530 0.88 -0.5 333,833 + -2.0 333,833 + -3.4 333,837 + -0.7 333,837 + -2.8 333,838 - -1.7 333,838 - -0.9 333,838 - -0.3 333,838 - -0.3 333,838 - -2.3 333,838 - +1.8 333,866 + +0.2 333,867 - -0.3 333,867 - +0.1 333,867 - -1.3 333,875 + -0.2 333,875 + -3.2 333,875 + -0.2 333,875 + -1.5 333,875 + -1.7 333,962 + IAI47_01535 0.22 -1.0 333,962 + IAI47_01535 0.22 +0.8 333,962 + IAI47_01535 0.22 -1.9 333,963 - IAI47_01535 0.22 +0.2 333,963 - IAI47_01535 0.22 +0.3 334,050 + IAI47_01535 0.36 -2.6 334,051 - IAI47_01535 0.36 -1.8 334,093 + IAI47_01535 0.43 -1.5 334,093 + IAI47_01535 0.43 -1.3 334,186 + IAI47_01535 0.59 -1.4 334,191 + IAI47_01535 0.60 -0.1 334,228 + IAI47_01535 0.66 -1.2 334,228 + IAI47_01535 0.66 +0.7 334,228 + IAI47_01535 0.66 +0.2 334,229 - IAI47_01535 0.66 -1.3 334,229 - IAI47_01535 0.66 -1.8 334,229 - IAI47_01535 0.66 -2.1 334,229 - IAI47_01535 0.66 +0.1 334,229 - IAI47_01535 0.66 -2.3 334,293 + IAI47_01535 0.77 -1.1 334,294 - IAI47_01535 0.77 -1.9 334,294 - IAI47_01535 0.77 -3.2 334,294 - IAI47_01535 0.77 -1.5 334,359 + IAI47_01535 0.88 -3.2 334,359 + IAI47_01535 0.88 -1.0 334,359 + IAI47_01535 0.88 -1.5 334,360 - IAI47_01535 0.88 +1.1 334,410 + -3.1 334,410 + -1.1 334,410 + -0.1 334,410 + -0.4 334,410 + -0.8 334,425 + -0.4 334,425 + -2.1 334,426 - -2.3 334,451 - +0.0 334,451 - -0.5 334,451 - -0.3 334,462 + -0.9 334,462 + -0.6 334,463 - +0.1 334,463 - +0.8 334,495 + +1.5 334,496 - -1.4 334,532 + +0.2 334,532 + -1.4 334,532 + +1.8 334,537 + +0.3 334,561 + -1.6 334,561 + -2.1 334,608 + -1.3 334,608 + -0.1 336,362 + +0.8 336,362 + +0.3 336,362 + +0.9 336,362 + +0.2 336,362 + -1.3 336,362 + -0.9 336,363 - +1.1 336,363 - -1.9 336,363 - +1.3 336,367 - -0.1 336,367 - -1.2 336,367 - -0.6 336,393 + +0.7 336,400 + -0.9 336,400 + -0.7 336,401 - -3.1 336,401 - -1.0 336,401 - -3.0 336,490 - IAI47_01545 0.18 -0.6 336,496 - IAI47_01545 0.19 +0.3 336,496 - IAI47_01545 0.19 -0.5 336,496 - IAI47_01545 0.19 -1.1 336,496 - IAI47_01545 0.19 -1.9 336,685 - IAI47_01545 0.47 -2.4 336,708 + IAI47_01545 0.51 -1.1 336,708 + IAI47_01545 0.51 -0.2 336,708 + IAI47_01545 0.51 -1.2 336,709 - IAI47_01545 0.51 +1.4 336,709 - IAI47_01545 0.51 -2.8 336,738 + IAI47_01545 0.55 -0.8 336,739 - IAI47_01545 0.55 -0.5 336,770 - IAI47_01545 0.60 +1.0 336,918 + IAI47_01545 0.82 +0.7 336,978 + -1.5 336,978 + -1.9 336,978 + -0.2 336,978 + -1.7 336,979 - -1.7 336,979 - -0.5 336,979 - +0.2 336,983 - -1.4 337,036 + -2.2 337,037 - -0.6 337,046 - -0.2 337,046 - -0.4 337,087 + +0.9 337,088 - -1.8 337,088 - -0.9 337,088 - +0.1 337,088 - -0.8 337,125 - +0.6 337,192 + IAI47_01550 0.17 +0.4 337,192 + IAI47_01550 0.17 +0.1 337,192 + IAI47_01550 0.17 -1.2 337,192 + IAI47_01550 0.17 -0.7 337,226 + IAI47_01550 0.20 -0.8 337,226 + IAI47_01550 0.20 -1.2 337,226 + IAI47_01550 0.20 -0.8 337,227 - IAI47_01550 0.20 -2.0 337,227 - IAI47_01550 0.20 -3.0 337,227 - IAI47_01550 0.20 -1.2 337,268 + IAI47_01550 0.24 +1.7 337,284 + IAI47_01550 0.26 +0.4 337,284 + IAI47_01550 0.26 -0.8 337,285 - IAI47_01550 0.26 -2.8 337,285 - IAI47_01550 0.26 +1.3 337,292 + IAI47_01550 0.27 -0.5 337,292 + IAI47_01550 0.27 +1.0 337,292 + IAI47_01550 0.27 +0.1 337,292 + IAI47_01550 0.27 -0.7 337,293 - IAI47_01550 0.27 +2.4 337,293 - IAI47_01550 0.27 +1.0
Or see this region's nucleotide sequence