Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04180

Experiment: McCas_formate_complete Anhydrotetracycline 0.05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04175 and MMJJ_RS04180 are separated by 120 nucleotidesMMJJ_RS04180 and MMJJ_RS04185 are separated by 2 nucleotides MMJJ_RS04175: MMJJ_RS04175 - hypothetical protein, at 776,880 to 777,617 _RS04175 MMJJ_RS04180: MMJJ_RS04180 - metalloregulator ArsR/SmtB family transcription factor, at 777,738 to 778,082 _RS04180 MMJJ_RS04185: MMJJ_RS04185 - cadmium-translocating P-type ATPase, at 778,085 to 780,160 _RS04185 Position (kb) 777 778 779Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 776.751 kb on + strandat 776.756 kb on + strandat 776.756 kb on + strandat 776.766 kb on - strandat 776.766 kb on - strandat 776.766 kb on - strandat 776.766 kb on - strandat 776.766 kb on - strandat 776.766 kb on - strandat 776.767 kb on + strandat 776.767 kb on + strandat 776.788 kb on - strandat 776.809 kb on + strandat 776.850 kb on - strandat 776.882 kb on + strandat 776.975 kb on + strand, within MMJJ_RS04175at 776.989 kb on + strand, within MMJJ_RS04175at 777.112 kb on + strand, within MMJJ_RS04175at 777.209 kb on - strand, within MMJJ_RS04175at 777.209 kb on - strand, within MMJJ_RS04175at 777.234 kb on + strand, within MMJJ_RS04175at 777.234 kb on + strand, within MMJJ_RS04175at 777.309 kb on + strand, within MMJJ_RS04175at 777.393 kb on - strand, within MMJJ_RS04175at 777.396 kb on - strand, within MMJJ_RS04175at 777.403 kb on + strand, within MMJJ_RS04175at 777.454 kb on + strand, within MMJJ_RS04175at 777.465 kb on - strand, within MMJJ_RS04175at 777.492 kb on - strand, within MMJJ_RS04175at 777.493 kb on + strand, within MMJJ_RS04175at 777.534 kb on + strand, within MMJJ_RS04175at 777.538 kb on + strand, within MMJJ_RS04175at 777.538 kb on + strand, within MMJJ_RS04175at 777.554 kb on - strandat 777.555 kb on + strandat 777.555 kb on + strandat 777.556 kb on - strandat 777.556 kb on - strandat 777.557 kb on + strandat 777.557 kb on + strandat 777.557 kb on + strandat 777.557 kb on + strandat 777.576 kb on - strandat 777.577 kb on + strandat 777.577 kb on + strandat 777.617 kb on - strandat 777.617 kb on - strandat 777.618 kb on + strandat 777.618 kb on + strandat 777.654 kb on + strandat 777.654 kb on + strandat 777.654 kb on + strandat 777.654 kb on + strandat 777.661 kb on - strandat 777.678 kb on - strandat 777.680 kb on - strandat 777.681 kb on + strandat 777.681 kb on + strandat 777.688 kb on - strandat 777.696 kb on - strandat 777.697 kb on + strandat 777.699 kb on + strandat 777.699 kb on + strandat 777.901 kb on - strand, within MMJJ_RS04180at 777.932 kb on - strand, within MMJJ_RS04180at 777.932 kb on - strand, within MMJJ_RS04180at 778.084 kb on - strandat 778.085 kb on + strandat 778.094 kb on - strandat 778.095 kb on + strandat 778.246 kb on + strandat 778.249 kb on + strandat 778.249 kb on + strandat 778.276 kb on + strandat 778.276 kb on + strandat 778.302 kb on - strand, within MMJJ_RS04185at 778.403 kb on + strand, within MMJJ_RS04185at 778.403 kb on + strand, within MMJJ_RS04185at 778.425 kb on - strand, within MMJJ_RS04185at 778.425 kb on - strand, within MMJJ_RS04185at 778.425 kb on - strand, within MMJJ_RS04185at 778.425 kb on - strand, within MMJJ_RS04185at 778.425 kb on - strand, within MMJJ_RS04185at 778.426 kb on + strand, within MMJJ_RS04185at 778.430 kb on - strand, within MMJJ_RS04185at 778.431 kb on + strand, within MMJJ_RS04185at 778.434 kb on - strand, within MMJJ_RS04185at 778.434 kb on - strand, within MMJJ_RS04185at 778.435 kb on + strand, within MMJJ_RS04185at 778.435 kb on + strand, within MMJJ_RS04185at 778.435 kb on + strand, within MMJJ_RS04185at 778.435 kb on + strand, within MMJJ_RS04185at 778.435 kb on + strand, within MMJJ_RS04185at 778.435 kb on + strand, within MMJJ_RS04185at 778.435 kb on + strand, within MMJJ_RS04185at 778.437 kb on - strand, within MMJJ_RS04185at 778.438 kb on + strand, within MMJJ_RS04185at 778.438 kb on + strand, within MMJJ_RS04185at 778.438 kb on + strand, within MMJJ_RS04185at 778.452 kb on - strand, within MMJJ_RS04185at 778.456 kb on - strand, within MMJJ_RS04185at 778.570 kb on + strand, within MMJJ_RS04185at 778.570 kb on + strand, within MMJJ_RS04185at 778.575 kb on - strand, within MMJJ_RS04185at 778.580 kb on - strand, within MMJJ_RS04185at 778.606 kb on - strand, within MMJJ_RS04185at 778.717 kb on + strand, within MMJJ_RS04185at 778.733 kb on + strand, within MMJJ_RS04185at 778.826 kb on + strand, within MMJJ_RS04185at 778.857 kb on - strand, within MMJJ_RS04185at 778.879 kb on + strand, within MMJJ_RS04185at 778.964 kb on + strand, within MMJJ_RS04185at 778.964 kb on + strand, within MMJJ_RS04185at 778.991 kb on + strand, within MMJJ_RS04185at 779.015 kb on + strand, within MMJJ_RS04185at 779.023 kb on - strand, within MMJJ_RS04185at 779.068 kb on + strand, within MMJJ_RS04185

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Anhydrotetracycline 0.05 mM
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776,751 + +1.9
776,756 + +0.1
776,756 + +1.4
776,766 - -2.8
776,766 - -2.0
776,766 - +1.0
776,766 - +0.4
776,766 - -0.4
776,766 - +1.2
776,767 + -0.6
776,767 + -0.7
776,788 - +2.7
776,809 + +4.1
776,850 - -0.3
776,882 + +1.9
776,975 + MMJJ_RS04175 0.13 -1.0
776,989 + MMJJ_RS04175 0.15 -0.7
777,112 + MMJJ_RS04175 0.31 -1.7
777,209 - MMJJ_RS04175 0.45 -0.1
777,209 - MMJJ_RS04175 0.45 +0.2
777,234 + MMJJ_RS04175 0.48 -1.3
777,234 + MMJJ_RS04175 0.48 +1.8
777,309 + MMJJ_RS04175 0.58 -0.1
777,393 - MMJJ_RS04175 0.70 +1.8
777,396 - MMJJ_RS04175 0.70 -2.1
777,403 + MMJJ_RS04175 0.71 +2.2
777,454 + MMJJ_RS04175 0.78 +1.0
777,465 - MMJJ_RS04175 0.79 -0.7
777,492 - MMJJ_RS04175 0.83 +0.7
777,493 + MMJJ_RS04175 0.83 -1.4
777,534 + MMJJ_RS04175 0.89 +1.2
777,538 + MMJJ_RS04175 0.89 +0.2
777,538 + MMJJ_RS04175 0.89 +1.3
777,554 - +0.2
777,555 + -1.1
777,555 + -0.6
777,556 - -0.6
777,556 - +1.2
777,557 + -1.3
777,557 + -3.6
777,557 + +1.8
777,557 + -1.0
777,576 - +1.0
777,577 + -2.9
777,577 + +0.7
777,617 - -0.7
777,617 - -1.6
777,618 + +0.4
777,618 + -0.7
777,654 + +0.8
777,654 + -2.6
777,654 + +2.6
777,654 + +2.6
777,661 - -2.0
777,678 - -1.7
777,680 - +2.1
777,681 + +0.5
777,681 + -0.1
777,688 - +0.0
777,696 - +3.1
777,697 + -2.2
777,699 + +3.5
777,699 + +2.6
777,901 - MMJJ_RS04180 0.47 -1.4
777,932 - MMJJ_RS04180 0.56 -2.1
777,932 - MMJJ_RS04180 0.56 -0.5
778,084 - +0.8
778,085 + -0.1
778,094 - -2.0
778,095 + -2.4
778,246 + +0.1
778,249 + +1.7
778,249 + +0.6
778,276 + +0.6
778,276 + +0.6
778,302 - MMJJ_RS04185 0.10 -2.3
778,403 + MMJJ_RS04185 0.15 -0.4
778,403 + MMJJ_RS04185 0.15 -1.6
778,425 - MMJJ_RS04185 0.16 -0.1
778,425 - MMJJ_RS04185 0.16 +0.6
778,425 - MMJJ_RS04185 0.16 +2.0
778,425 - MMJJ_RS04185 0.16 +0.4
778,425 - MMJJ_RS04185 0.16 -2.5
778,426 + MMJJ_RS04185 0.16 -1.0
778,430 - MMJJ_RS04185 0.17 +0.7
778,431 + MMJJ_RS04185 0.17 +0.0
778,434 - MMJJ_RS04185 0.17 +0.1
778,434 - MMJJ_RS04185 0.17 -1.1
778,435 + MMJJ_RS04185 0.17 +0.5
778,435 + MMJJ_RS04185 0.17 +1.5
778,435 + MMJJ_RS04185 0.17 -2.0
778,435 + MMJJ_RS04185 0.17 +0.7
778,435 + MMJJ_RS04185 0.17 +0.1
778,435 + MMJJ_RS04185 0.17 +0.6
778,435 + MMJJ_RS04185 0.17 -1.4
778,437 - MMJJ_RS04185 0.17 +0.8
778,438 + MMJJ_RS04185 0.17 -2.5
778,438 + MMJJ_RS04185 0.17 +0.4
778,438 + MMJJ_RS04185 0.17 -1.8
778,452 - MMJJ_RS04185 0.18 -2.0
778,456 - MMJJ_RS04185 0.18 +0.7
778,570 + MMJJ_RS04185 0.23 +2.5
778,570 + MMJJ_RS04185 0.23 +0.8
778,575 - MMJJ_RS04185 0.24 +1.3
778,580 - MMJJ_RS04185 0.24 +2.4
778,606 - MMJJ_RS04185 0.25 +1.2
778,717 + MMJJ_RS04185 0.30 -1.2
778,733 + MMJJ_RS04185 0.31 +0.9
778,826 + MMJJ_RS04185 0.36 +1.1
778,857 - MMJJ_RS04185 0.37 +0.0
778,879 + MMJJ_RS04185 0.38 -0.3
778,964 + MMJJ_RS04185 0.42 +1.5
778,964 + MMJJ_RS04185 0.42 +0.3
778,991 + MMJJ_RS04185 0.44 -1.0
779,015 + MMJJ_RS04185 0.45 -1.0
779,023 - MMJJ_RS04185 0.45 +1.3
779,068 + MMJJ_RS04185 0.47 +0.4

Or see this region's nucleotide sequence