Experiment: McCas_formate_complete hypophosphite 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03540 and MMJJ_RS03545 are separated by 0 nucleotides MMJJ_RS03545 and MMJJ_RS03550 are separated by 110 nucleotides MMJJ_RS03550 and MMJJ_RS03555 are separated by 105 nucleotides MMJJ_RS03555 and MMJJ_RS03560 are separated by 45 nucleotides
MMJJ_RS03540: MMJJ_RS03540 - TIGR00289 family protein, at 663,025 to 663,696
_RS03540
MMJJ_RS03545: MMJJ_RS03545 - flagella protein F, at 663,697 to 664,131
_RS03545
MMJJ_RS03550: MMJJ_RS03550 - tRNA-Val, at 664,242 to 664,318
_RS03550
MMJJ_RS03555: MMJJ_RS03555 - acetyl-CoA carboxylase biotin carboxylase subunit, at 664,424 to 665,929
_RS03555
MMJJ_RS03560: MMJJ_RS03560 - sodium-extruding oxaloacetate decarboxylase subunit alpha, at 665,975 to 667,684
_RS03560
Position (kb) 664
665
666 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 663.518 kb on - strand, within MMJJ_RS03540 at 663.543 kb on - strand, within MMJJ_RS03540 at 663.582 kb on + strand, within MMJJ_RS03540 at 663.658 kb on - strand at 663.659 kb on + strand at 663.659 kb on + strand at 663.664 kb on + strand at 663.664 kb on + strand at 663.666 kb on + strand at 663.666 kb on + strand at 663.666 kb on + strand at 663.698 kb on - strand at 663.699 kb on + strand at 663.699 kb on + strand at 663.748 kb on - strand, within MMJJ_RS03545 at 663.748 kb on - strand, within MMJJ_RS03545 at 663.749 kb on + strand, within MMJJ_RS03545 at 663.749 kb on + strand, within MMJJ_RS03545 at 663.759 kb on - strand, within MMJJ_RS03545 at 663.782 kb on - strand, within MMJJ_RS03545 at 663.796 kb on + strand, within MMJJ_RS03545 at 663.797 kb on - strand, within MMJJ_RS03545 at 663.797 kb on - strand, within MMJJ_RS03545 at 663.798 kb on + strand, within MMJJ_RS03545 at 663.800 kb on + strand, within MMJJ_RS03545 at 663.800 kb on + strand, within MMJJ_RS03545 at 663.800 kb on + strand, within MMJJ_RS03545 at 663.800 kb on + strand, within MMJJ_RS03545 at 663.828 kb on + strand, within MMJJ_RS03545 at 663.903 kb on - strand, within MMJJ_RS03545 at 663.903 kb on - strand, within MMJJ_RS03545 at 663.903 kb on - strand, within MMJJ_RS03545 at 663.903 kb on - strand, within MMJJ_RS03545 at 663.904 kb on + strand, within MMJJ_RS03545 at 663.916 kb on - strand, within MMJJ_RS03545 at 663.916 kb on - strand, within MMJJ_RS03545 at 663.916 kb on - strand, within MMJJ_RS03545 at 663.917 kb on + strand, within MMJJ_RS03545 at 663.917 kb on + strand, within MMJJ_RS03545 at 663.917 kb on + strand, within MMJJ_RS03545 at 663.920 kb on + strand, within MMJJ_RS03545 at 663.925 kb on - strand, within MMJJ_RS03545 at 663.925 kb on - strand, within MMJJ_RS03545 at 663.926 kb on + strand, within MMJJ_RS03545 at 663.926 kb on + strand, within MMJJ_RS03545 at 663.926 kb on + strand, within MMJJ_RS03545 at 663.926 kb on + strand, within MMJJ_RS03545 at 663.926 kb on + strand, within MMJJ_RS03545 at 663.927 kb on - strand, within MMJJ_RS03545 at 663.928 kb on + strand, within MMJJ_RS03545 at 664.004 kb on - strand, within MMJJ_RS03545 at 664.004 kb on - strand, within MMJJ_RS03545 at 664.027 kb on - strand, within MMJJ_RS03545 at 664.027 kb on - strand, within MMJJ_RS03545 at 664.066 kb on - strand, within MMJJ_RS03545 at 664.112 kb on - strand at 664.113 kb on + strand at 664.147 kb on + strand at 664.155 kb on - strand at 664.155 kb on - strand at 664.180 kb on - strand at 664.180 kb on - strand at 664.180 kb on - strand at 664.181 kb on + strand at 664.184 kb on - strand at 664.339 kb on - strand at 664.345 kb on + strand at 664.349 kb on + strand at 664.368 kb on - strand at 664.394 kb on + strand at 664.394 kb on + strand at 664.407 kb on - strand at 664.411 kb on - strand at 664.412 kb on + strand at 664.437 kb on - strand at 664.437 kb on - strand at 664.469 kb on - strand at 664.469 kb on - strand at 664.469 kb on - strand at 664.470 kb on + strand at 664.482 kb on + strand at 664.689 kb on + strand, within MMJJ_RS03555 at 665.807 kb on + strand at 665.963 kb on - strand at 666.085 kb on - strand at 666.200 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete hypophosphite 62.5 mM remove 663,518 - MMJJ_RS03540 0.73 -5.7 663,543 - MMJJ_RS03540 0.77 -0.2 663,582 + MMJJ_RS03540 0.83 +1.6 663,658 - +1.1 663,659 + -0.5 663,659 + +0.3 663,664 + +0.4 663,664 + -1.3 663,666 + -1.3 663,666 + -2.5 663,666 + -0.9 663,698 - -1.0 663,699 + -3.1 663,699 + -0.5 663,748 - MMJJ_RS03545 0.12 -1.0 663,748 - MMJJ_RS03545 0.12 +0.3 663,749 + MMJJ_RS03545 0.12 +0.1 663,749 + MMJJ_RS03545 0.12 -1.2 663,759 - MMJJ_RS03545 0.14 +3.1 663,782 - MMJJ_RS03545 0.20 +0.7 663,796 + MMJJ_RS03545 0.23 +1.7 663,797 - MMJJ_RS03545 0.23 -0.5 663,797 - MMJJ_RS03545 0.23 +0.5 663,798 + MMJJ_RS03545 0.23 +0.7 663,800 + MMJJ_RS03545 0.24 +0.2 663,800 + MMJJ_RS03545 0.24 +1.7 663,800 + MMJJ_RS03545 0.24 +0.9 663,800 + MMJJ_RS03545 0.24 +0.4 663,828 + MMJJ_RS03545 0.30 +1.6 663,903 - MMJJ_RS03545 0.47 -2.4 663,903 - MMJJ_RS03545 0.47 +0.9 663,903 - MMJJ_RS03545 0.47 -0.5 663,903 - MMJJ_RS03545 0.47 +1.9 663,904 + MMJJ_RS03545 0.48 -3.4 663,916 - MMJJ_RS03545 0.50 -0.2 663,916 - MMJJ_RS03545 0.50 -1.1 663,916 - MMJJ_RS03545 0.50 +1.9 663,917 + MMJJ_RS03545 0.51 -1.5 663,917 + MMJJ_RS03545 0.51 +0.9 663,917 + MMJJ_RS03545 0.51 +1.0 663,920 + MMJJ_RS03545 0.51 -2.9 663,925 - MMJJ_RS03545 0.52 +1.6 663,925 - MMJJ_RS03545 0.52 +0.3 663,926 + MMJJ_RS03545 0.53 +0.6 663,926 + MMJJ_RS03545 0.53 +1.0 663,926 + MMJJ_RS03545 0.53 -0.4 663,926 + MMJJ_RS03545 0.53 +1.2 663,926 + MMJJ_RS03545 0.53 -2.9 663,927 - MMJJ_RS03545 0.53 +0.7 663,928 + MMJJ_RS03545 0.53 +0.7 664,004 - MMJJ_RS03545 0.71 +1.7 664,004 - MMJJ_RS03545 0.71 +2.1 664,027 - MMJJ_RS03545 0.76 +1.4 664,027 - MMJJ_RS03545 0.76 -0.4 664,066 - MMJJ_RS03545 0.85 +0.1 664,112 - +1.1 664,113 + -0.8 664,147 + +1.3 664,155 - +0.1 664,155 - -2.9 664,180 - -1.9 664,180 - -0.4 664,180 - +1.3 664,181 + +3.0 664,184 - +0.1 664,339 - +1.2 664,345 + +1.5 664,349 + +1.9 664,368 - +0.6 664,394 + +1.4 664,394 + +0.1 664,407 - -0.8 664,411 - -0.4 664,412 + +1.6 664,437 - -2.7 664,437 - +0.5 664,469 - +0.9 664,469 - -0.0 664,469 - -1.0 664,470 + +1.0 664,482 + -1.9 664,689 + MMJJ_RS03555 0.18 +0.5 665,807 + -1.1 665,963 - -1.9 666,085 - -2.1 666,200 - -1.5
Or see this region's nucleotide sequence