Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS02195

Experiment: McCas_formate_complete hypophosphite 62.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS02190 and MMJJ_RS02195 are separated by 26 nucleotidesMMJJ_RS02195 and MMJJ_RS02200 are separated by 14 nucleotidesMMJJ_RS02200 and MMJJ_RS02205 are separated by 33 nucleotides MMJJ_RS02190: MMJJ_RS02190 - molybdopterin biosynthesis protein, at 415,429 to 417,279 _RS02190 MMJJ_RS02195: MMJJ_RS02195 - AmmeMemoRadiSam system radical SAM enzyme, at 417,306 to 418,316 _RS02195 MMJJ_RS02200: MMJJ_RS02200 - chorismate pyruvate-lyase family protein, at 418,331 to 418,846 _RS02200 MMJJ_RS02205: MMJJ_RS02205 - hypothetical protein, at 418,880 to 419,482 _RS02205 Position (kb) 417 418 419Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 416.438 kb on + strand, within MMJJ_RS02190at 416.528 kb on + strand, within MMJJ_RS02190at 416.528 kb on + strand, within MMJJ_RS02190at 416.536 kb on - strand, within MMJJ_RS02190at 416.537 kb on + strand, within MMJJ_RS02190at 416.537 kb on + strand, within MMJJ_RS02190at 416.572 kb on - strand, within MMJJ_RS02190at 416.583 kb on - strand, within MMJJ_RS02190at 416.594 kb on + strand, within MMJJ_RS02190at 416.629 kb on - strand, within MMJJ_RS02190at 416.635 kb on + strand, within MMJJ_RS02190at 416.635 kb on + strand, within MMJJ_RS02190at 416.635 kb on + strand, within MMJJ_RS02190at 416.652 kb on + strand, within MMJJ_RS02190at 416.655 kb on - strand, within MMJJ_RS02190at 416.656 kb on + strand, within MMJJ_RS02190at 416.659 kb on - strand, within MMJJ_RS02190at 416.659 kb on - strand, within MMJJ_RS02190at 416.701 kb on - strand, within MMJJ_RS02190at 416.726 kb on + strand, within MMJJ_RS02190at 416.805 kb on - strand, within MMJJ_RS02190at 416.826 kb on - strand, within MMJJ_RS02190at 416.826 kb on - strand, within MMJJ_RS02190at 416.827 kb on + strand, within MMJJ_RS02190at 416.827 kb on + strand, within MMJJ_RS02190at 416.827 kb on + strand, within MMJJ_RS02190at 416.843 kb on + strand, within MMJJ_RS02190at 416.843 kb on + strand, within MMJJ_RS02190at 416.935 kb on + strand, within MMJJ_RS02190at 416.939 kb on + strand, within MMJJ_RS02190at 417.081 kb on + strand, within MMJJ_RS02190at 417.155 kb on + strandat 417.258 kb on - strandat 417.268 kb on - strandat 417.272 kb on - strandat 417.282 kb on - strandat 417.283 kb on + strandat 417.292 kb on - strandat 417.308 kb on + strandat 417.312 kb on - strandat 417.312 kb on - strandat 417.312 kb on - strandat 417.312 kb on - strandat 417.312 kb on - strandat 417.313 kb on + strandat 417.313 kb on + strandat 417.313 kb on + strandat 417.313 kb on + strandat 417.313 kb on + strandat 417.366 kb on + strandat 417.376 kb on + strandat 417.419 kb on - strand, within MMJJ_RS02195at 417.434 kb on + strand, within MMJJ_RS02195at 417.474 kb on - strand, within MMJJ_RS02195at 417.474 kb on - strand, within MMJJ_RS02195at 417.474 kb on - strand, within MMJJ_RS02195at 417.475 kb on + strand, within MMJJ_RS02195at 417.475 kb on + strand, within MMJJ_RS02195at 417.475 kb on + strand, within MMJJ_RS02195at 417.475 kb on + strand, within MMJJ_RS02195at 417.475 kb on + strand, within MMJJ_RS02195at 417.475 kb on + strand, within MMJJ_RS02195at 417.484 kb on + strand, within MMJJ_RS02195at 417.529 kb on + strand, within MMJJ_RS02195at 417.537 kb on + strand, within MMJJ_RS02195at 417.557 kb on - strand, within MMJJ_RS02195at 417.557 kb on - strand, within MMJJ_RS02195at 417.557 kb on - strand, within MMJJ_RS02195at 417.559 kb on - strand, within MMJJ_RS02195at 417.560 kb on + strand, within MMJJ_RS02195at 417.658 kb on - strand, within MMJJ_RS02195at 417.739 kb on + strand, within MMJJ_RS02195at 417.754 kb on + strand, within MMJJ_RS02195at 417.783 kb on - strand, within MMJJ_RS02195at 417.785 kb on - strand, within MMJJ_RS02195at 417.786 kb on + strand, within MMJJ_RS02195at 417.839 kb on + strand, within MMJJ_RS02195at 417.839 kb on + strand, within MMJJ_RS02195at 417.855 kb on - strand, within MMJJ_RS02195at 417.856 kb on + strand, within MMJJ_RS02195at 417.916 kb on + strand, within MMJJ_RS02195at 417.916 kb on + strand, within MMJJ_RS02195at 417.930 kb on + strand, within MMJJ_RS02195at 417.931 kb on - strand, within MMJJ_RS02195at 417.932 kb on + strand, within MMJJ_RS02195at 417.936 kb on + strand, within MMJJ_RS02195at 418.055 kb on - strand, within MMJJ_RS02195at 418.067 kb on - strand, within MMJJ_RS02195at 418.068 kb on + strand, within MMJJ_RS02195at 418.119 kb on - strand, within MMJJ_RS02195at 418.119 kb on - strand, within MMJJ_RS02195at 418.119 kb on - strand, within MMJJ_RS02195at 418.119 kb on - strand, within MMJJ_RS02195at 418.119 kb on - strand, within MMJJ_RS02195at 418.120 kb on + strand, within MMJJ_RS02195at 418.215 kb on - strand, within MMJJ_RS02195at 418.394 kb on - strand, within MMJJ_RS02200at 418.394 kb on - strandat 418.396 kb on - strand, within MMJJ_RS02200at 418.396 kb on - strand, within MMJJ_RS02200at 418.396 kb on - strand, within MMJJ_RS02200at 418.397 kb on + strand, within MMJJ_RS02200at 418.401 kb on - strand, within MMJJ_RS02200at 418.401 kb on - strand, within MMJJ_RS02200at 418.402 kb on + strand, within MMJJ_RS02200at 418.402 kb on + strand, within MMJJ_RS02200at 418.476 kb on + strand, within MMJJ_RS02200at 418.574 kb on - strand, within MMJJ_RS02200at 418.574 kb on - strand, within MMJJ_RS02200at 418.576 kb on - strand, within MMJJ_RS02200at 418.576 kb on - strand, within MMJJ_RS02200at 418.576 kb on - strand, within MMJJ_RS02200at 418.576 kb on - strand, within MMJJ_RS02200at 418.577 kb on + strand, within MMJJ_RS02200at 418.577 kb on + strand, within MMJJ_RS02200at 418.577 kb on + strand, within MMJJ_RS02200at 418.580 kb on - strand, within MMJJ_RS02200at 418.580 kb on - strand, within MMJJ_RS02200at 418.580 kb on - strand, within MMJJ_RS02200at 418.581 kb on + strand, within MMJJ_RS02200at 418.581 kb on + strand, within MMJJ_RS02200at 418.590 kb on + strand, within MMJJ_RS02200at 418.620 kb on - strand, within MMJJ_RS02200at 418.621 kb on + strand, within MMJJ_RS02200at 418.621 kb on + strand, within MMJJ_RS02200at 418.621 kb on + strand, within MMJJ_RS02200at 418.622 kb on - strand, within MMJJ_RS02200at 418.622 kb on - strand, within MMJJ_RS02200at 418.622 kb on - strand, within MMJJ_RS02200at 418.623 kb on + strand, within MMJJ_RS02200at 418.641 kb on + strand, within MMJJ_RS02200at 418.641 kb on + strand, within MMJJ_RS02200at 418.653 kb on + strand, within MMJJ_RS02200at 418.668 kb on + strand, within MMJJ_RS02200at 418.679 kb on - strand, within MMJJ_RS02200at 418.689 kb on - strand, within MMJJ_RS02200at 418.793 kb on - strand, within MMJJ_RS02200at 418.811 kb on - strandat 418.834 kb on + strandat 418.857 kb on + strandat 418.923 kb on + strandat 418.923 kb on + strandat 418.932 kb on - strandat 418.934 kb on - strandat 418.955 kb on - strand, within MMJJ_RS02205at 418.956 kb on + strand, within MMJJ_RS02205at 418.974 kb on - strand, within MMJJ_RS02205at 419.009 kb on - strand, within MMJJ_RS02205at 419.010 kb on + strand, within MMJJ_RS02205at 419.117 kb on - strand, within MMJJ_RS02205at 419.159 kb on + strand, within MMJJ_RS02205at 419.182 kb on - strand, within MMJJ_RS02205at 419.183 kb on + strand, within MMJJ_RS02205at 419.183 kb on + strand, within MMJJ_RS02205at 419.183 kb on + strand, within MMJJ_RS02205at 419.194 kb on - strand, within MMJJ_RS02205at 419.194 kb on - strand, within MMJJ_RS02205at 419.206 kb on - strand, within MMJJ_RS02205at 419.207 kb on + strand, within MMJJ_RS02205at 419.213 kb on - strand, within MMJJ_RS02205at 419.238 kb on - strand, within MMJJ_RS02205at 419.245 kb on - strand, within MMJJ_RS02205at 419.245 kb on - strand, within MMJJ_RS02205at 419.245 kb on - strand, within MMJJ_RS02205at 419.246 kb on + strand, within MMJJ_RS02205at 419.246 kb on + strand, within MMJJ_RS02205at 419.250 kb on + strand, within MMJJ_RS02205at 419.298 kb on + strand, within MMJJ_RS02205at 419.309 kb on + strand, within MMJJ_RS02205

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete hypophosphite 62.5 mM
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416,438 + MMJJ_RS02190 0.55 -0.0
416,528 + MMJJ_RS02190 0.59 -3.2
416,528 + MMJJ_RS02190 0.59 +0.1
416,536 - MMJJ_RS02190 0.60 -0.5
416,537 + MMJJ_RS02190 0.60 -2.6
416,537 + MMJJ_RS02190 0.60 -1.0
416,572 - MMJJ_RS02190 0.62 -3.4
416,583 - MMJJ_RS02190 0.62 -0.5
416,594 + MMJJ_RS02190 0.63 -3.6
416,629 - MMJJ_RS02190 0.65 -2.9
416,635 + MMJJ_RS02190 0.65 -0.3
416,635 + MMJJ_RS02190 0.65 -1.5
416,635 + MMJJ_RS02190 0.65 +0.6
416,652 + MMJJ_RS02190 0.66 -2.7
416,655 - MMJJ_RS02190 0.66 -2.5
416,656 + MMJJ_RS02190 0.66 -0.2
416,659 - MMJJ_RS02190 0.66 -3.2
416,659 - MMJJ_RS02190 0.66 -0.2
416,701 - MMJJ_RS02190 0.69 +0.2
416,726 + MMJJ_RS02190 0.70 +0.4
416,805 - MMJJ_RS02190 0.74 +0.1
416,826 - MMJJ_RS02190 0.75 +0.3
416,826 - MMJJ_RS02190 0.75 +0.3
416,827 + MMJJ_RS02190 0.76 +0.5
416,827 + MMJJ_RS02190 0.76 -4.0
416,827 + MMJJ_RS02190 0.76 -3.0
416,843 + MMJJ_RS02190 0.76 -2.7
416,843 + MMJJ_RS02190 0.76 -0.5
416,935 + MMJJ_RS02190 0.81 -0.6
416,939 + MMJJ_RS02190 0.82 -3.2
417,081 + MMJJ_RS02190 0.89 -1.2
417,155 + +1.6
417,258 - -1.7
417,268 - -2.6
417,272 - +0.6
417,282 - +0.8
417,283 + +0.1
417,292 - -2.1
417,308 + -0.5
417,312 - -1.7
417,312 - -0.7
417,312 - +0.4
417,312 - -0.8
417,312 - +0.4
417,313 + -1.2
417,313 + -2.2
417,313 + -2.1
417,313 + -1.5
417,313 + -1.7
417,366 + -3.0
417,376 + -2.2
417,419 - MMJJ_RS02195 0.11 -0.7
417,434 + MMJJ_RS02195 0.13 -1.2
417,474 - MMJJ_RS02195 0.17 -0.9
417,474 - MMJJ_RS02195 0.17 -0.2
417,474 - MMJJ_RS02195 0.17 +0.9
417,475 + MMJJ_RS02195 0.17 -3.6
417,475 + MMJJ_RS02195 0.17 -4.1
417,475 + MMJJ_RS02195 0.17 -0.5
417,475 + MMJJ_RS02195 0.17 -2.3
417,475 + MMJJ_RS02195 0.17 -1.7
417,475 + MMJJ_RS02195 0.17 -1.0
417,484 + MMJJ_RS02195 0.18 -2.6
417,529 + MMJJ_RS02195 0.22 -2.2
417,537 + MMJJ_RS02195 0.23 -2.4
417,557 - MMJJ_RS02195 0.25 -0.7
417,557 - MMJJ_RS02195 0.25 -0.4
417,557 - MMJJ_RS02195 0.25 -0.7
417,559 - MMJJ_RS02195 0.25 +0.8
417,560 + MMJJ_RS02195 0.25 -2.0
417,658 - MMJJ_RS02195 0.35 +0.5
417,739 + MMJJ_RS02195 0.43 -1.3
417,754 + MMJJ_RS02195 0.44 -2.4
417,783 - MMJJ_RS02195 0.47 -1.7
417,785 - MMJJ_RS02195 0.47 +1.0
417,786 + MMJJ_RS02195 0.47 -2.0
417,839 + MMJJ_RS02195 0.53 -3.9
417,839 + MMJJ_RS02195 0.53 -2.1
417,855 - MMJJ_RS02195 0.54 -0.7
417,856 + MMJJ_RS02195 0.54 -2.4
417,916 + MMJJ_RS02195 0.60 -2.8
417,916 + MMJJ_RS02195 0.60 -1.8
417,930 + MMJJ_RS02195 0.62 -1.0
417,931 - MMJJ_RS02195 0.62 -0.7
417,932 + MMJJ_RS02195 0.62 -2.5
417,936 + MMJJ_RS02195 0.62 -2.8
418,055 - MMJJ_RS02195 0.74 +0.4
418,067 - MMJJ_RS02195 0.75 -0.1
418,068 + MMJJ_RS02195 0.75 -2.5
418,119 - MMJJ_RS02195 0.80 -1.2
418,119 - MMJJ_RS02195 0.80 +1.2
418,119 - MMJJ_RS02195 0.80 -1.4
418,119 - MMJJ_RS02195 0.80 -2.8
418,119 - MMJJ_RS02195 0.80 -1.3
418,120 + MMJJ_RS02195 0.81 -0.2
418,215 - MMJJ_RS02195 0.90 -0.4
418,394 - MMJJ_RS02200 0.12 -2.6
418,394 - +0.4
418,396 - MMJJ_RS02200 0.13 -3.2
418,396 - MMJJ_RS02200 0.13 -3.1
418,396 - MMJJ_RS02200 0.13 -2.5
418,397 + MMJJ_RS02200 0.13 -3.2
418,401 - MMJJ_RS02200 0.14 -2.6
418,401 - MMJJ_RS02200 0.14 -1.6
418,402 + MMJJ_RS02200 0.14 -0.6
418,402 + MMJJ_RS02200 0.14 -2.0
418,476 + MMJJ_RS02200 0.28 +0.4
418,574 - MMJJ_RS02200 0.47 -1.6
418,574 - MMJJ_RS02200 0.47 -1.6
418,576 - MMJJ_RS02200 0.47 -1.5
418,576 - MMJJ_RS02200 0.47 -2.0
418,576 - MMJJ_RS02200 0.47 -2.8
418,576 - MMJJ_RS02200 0.47 -0.6
418,577 + MMJJ_RS02200 0.48 -2.0
418,577 + MMJJ_RS02200 0.48 -3.1
418,577 + MMJJ_RS02200 0.48 -2.2
418,580 - MMJJ_RS02200 0.48 -1.6
418,580 - MMJJ_RS02200 0.48 -2.5
418,580 - MMJJ_RS02200 0.48 -0.6
418,581 + MMJJ_RS02200 0.48 -1.2
418,581 + MMJJ_RS02200 0.48 -2.0
418,590 + MMJJ_RS02200 0.50 -1.1
418,620 - MMJJ_RS02200 0.56 -2.5
418,621 + MMJJ_RS02200 0.56 -1.3
418,621 + MMJJ_RS02200 0.56 -1.6
418,621 + MMJJ_RS02200 0.56 -1.6
418,622 - MMJJ_RS02200 0.56 -2.2
418,622 - MMJJ_RS02200 0.56 -2.6
418,622 - MMJJ_RS02200 0.56 -1.6
418,623 + MMJJ_RS02200 0.57 -2.5
418,641 + MMJJ_RS02200 0.60 -2.8
418,641 + MMJJ_RS02200 0.60 -1.1
418,653 + MMJJ_RS02200 0.62 -2.5
418,668 + MMJJ_RS02200 0.65 -2.0
418,679 - MMJJ_RS02200 0.67 -2.8
418,689 - MMJJ_RS02200 0.69 -2.2
418,793 - MMJJ_RS02200 0.90 -1.2
418,811 - -2.2
418,834 + -4.0
418,857 + -2.2
418,923 + -0.6
418,923 + -2.6
418,932 - -2.5
418,934 - -3.6
418,955 - MMJJ_RS02205 0.12 -1.8
418,956 + MMJJ_RS02205 0.13 -3.3
418,974 - MMJJ_RS02205 0.16 +0.7
419,009 - MMJJ_RS02205 0.21 -3.5
419,010 + MMJJ_RS02205 0.22 -0.6
419,117 - MMJJ_RS02205 0.39 -4.3
419,159 + MMJJ_RS02205 0.46 -1.6
419,182 - MMJJ_RS02205 0.50 -1.4
419,183 + MMJJ_RS02205 0.50 -0.8
419,183 + MMJJ_RS02205 0.50 -4.2
419,183 + MMJJ_RS02205 0.50 -2.7
419,194 - MMJJ_RS02205 0.52 -1.5
419,194 - MMJJ_RS02205 0.52 -0.7
419,206 - MMJJ_RS02205 0.54 -1.9
419,207 + MMJJ_RS02205 0.54 -2.9
419,213 - MMJJ_RS02205 0.55 -1.2
419,238 - MMJJ_RS02205 0.59 -1.9
419,245 - MMJJ_RS02205 0.61 -0.5
419,245 - MMJJ_RS02205 0.61 -0.6
419,245 - MMJJ_RS02205 0.61 -1.0
419,246 + MMJJ_RS02205 0.61 -2.3
419,246 + MMJJ_RS02205 0.61 -2.9
419,250 + MMJJ_RS02205 0.61 -3.8
419,298 + MMJJ_RS02205 0.69 +0.4
419,309 + MMJJ_RS02205 0.71 -2.6

Or see this region's nucleotide sequence