Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06940

Experiment: McCas_formate_complete Polymyxin B sulfate 0.05 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Polymyxin B sulfate 0.05 mM
1,272,947	-		MMJJ_RS06935	0.28	+1.3
1,273,024	-		MMJJ_RS06935	0.35	-2.0
1,273,025	+		MMJJ_RS06935	0.35	-0.8
1,273,041	-		MMJJ_RS06935	0.36	-2.3
1,273,055	-		MMJJ_RS06935	0.37	-1.7
1,273,055	-		MMJJ_RS06935	0.37	+0.9
1,273,101	+		MMJJ_RS06935	0.41	-1.5
1,273,106	+		MMJJ_RS06935	0.42	-1.7
1,273,145	-		MMJJ_RS06935	0.45	+0.2
1,273,161	+		MMJJ_RS06935	0.47	-2.2
1,273,250	-		MMJJ_RS06935	0.55	-3.5
1,273,256	-		MMJJ_RS06935	0.55	-1.2
1,273,256	-		MMJJ_RS06935	0.55	-2.9
1,273,281	+		MMJJ_RS06935	0.58	-2.3
1,273,282	-		MMJJ_RS06935	0.58	-4.5
1,273,283	+		MMJJ_RS06935	0.58	-2.0
1,273,304	-		MMJJ_RS06935	0.60	-2.0
1,273,304	-		MMJJ_RS06935	0.60	-1.1
1,273,322	-		MMJJ_RS06935	0.61	-3.7
1,273,322	-		MMJJ_RS06935	0.61	-0.2
1,273,323	+		MMJJ_RS06935	0.61	-3.3
1,273,396	-		MMJJ_RS06935	0.68	-3.0
1,273,433	+		MMJJ_RS06935	0.71	-1.7
1,273,433	+		MMJJ_RS06935	0.71	+0.9
1,273,433	+		MMJJ_RS06935	0.71	+0.7
1,273,453	-		MMJJ_RS06935	0.73	-3.5
1,273,459	-		MMJJ_RS06935	0.74	-2.1
1,273,504	-		MMJJ_RS06935	0.78	-2.7
1,273,504	-		MMJJ_RS06935	0.78	-3.3
1,273,580	+		MMJJ_RS06935	0.85	+0.2
1,273,661	-				-1.3
1,273,662	+				-0.4
1,273,666	-				-3.6
1,273,667	+				+1.2
1,273,690	-				+0.3
1,273,693	-				-3.7
1,273,702	-				+0.1
1,273,706	-				+0.2
1,273,706	-				-0.1
1,273,707	+				+2.0
1,273,709	-				-0.8
1,273,709	-				-2.3
1,273,710	+				+1.9
1,273,710	+				+0.4
1,273,865	+				+0.6
1,273,878	-				-1.4
1,273,879	+				-2.2
1,273,884	-				-1.8
1,273,886	-				-1.2
1,273,887	+				-2.2
1,273,887	+				-1.2
1,273,887	+				-1.1
1,273,887	+				-0.8
1,273,887	+				-0.5
1,273,894	+				+0.7
1,273,902	+				-0.8
1,273,905	-				+1.3
1,273,906	+				-1.3
1,273,906	+				-1.2
1,273,906	+				+1.9
1,273,908	+				+0.1
1,273,927	+				+0.3
1,273,935	-				+0.6
1,273,938	-				+0.5
1,273,938	-				-3.1
1,273,939	+				+1.2
1,273,941	+				-1.7
1,273,948	+				-0.1
1,273,953	+				+2.2
1,273,966	-				-1.0
1,273,969	-				+1.5
1,273,969	-				+0.4
1,273,969	-				+2.0
1,273,970	+				-0.1
1,273,970	+				+1.7
1,273,970	+				+1.4
1,273,970	+				+4.4
1,273,970	+				+0.9
1,273,973	-				+1.3
1,273,973	-				-2.5
1,273,974	+				+1.5
1,273,974	+				-3.2
1,273,974	+				+0.1
1,273,997	-		MMJJ_RS06940	0.18	-2.2
1,273,998	+		MMJJ_RS06940	0.18	+0.8
1,274,003	+		MMJJ_RS06940	0.20	-3.5
1,274,004	-		MMJJ_RS06940	0.20	-2.0
1,274,004	-		MMJJ_RS06940	0.20	-3.5
1,274,004	-		MMJJ_RS06940	0.20	-3.2
1,274,004	-		MMJJ_RS06940	0.20	-2.9
1,274,004	-		MMJJ_RS06940	0.20	+1.2
1,274,005	+		MMJJ_RS06940	0.20	-2.2
1,274,005	+		MMJJ_RS06940	0.20	-1.7
1,274,005	+		MMJJ_RS06940	0.20	-0.8
1,274,005	+		MMJJ_RS06940	0.20	-3.1
1,274,005	+		MMJJ_RS06940	0.20	-0.8
1,274,005	+		MMJJ_RS06940	0.20	-1.4
1,274,005	+		MMJJ_RS06940	0.20	-3.2
1,274,032	-		MMJJ_RS06940	0.30	-1.5
1,274,039	+		MMJJ_RS06940	0.32	+0.7
1,274,060	-		MMJJ_RS06940	0.40	-0.4
1,274,060	-		MMJJ_RS06940	0.40	+0.2
1,274,060	-		MMJJ_RS06940	0.40	-3.7
1,274,060	-		MMJJ_RS06940	0.40	-2.9
1,274,060	-		MMJJ_RS06940	0.40	-3.0
1,274,061	+		MMJJ_RS06940	0.40	-0.8
1,274,066	-		MMJJ_RS06940	0.42	-2.0
1,274,066	-		MMJJ_RS06940	0.42	-1.2
1,274,066	-		MMJJ_RS06940	0.42	-4.4
1,274,067	+		MMJJ_RS06940	0.42	-1.8
1,274,067	+		MMJJ_RS06940	0.42	-4.4
1,274,111	+		MMJJ_RS06940	0.57	+1.2
1,274,116	-		MMJJ_RS06940	0.59	+1.2
1,274,129	+		MMJJ_RS06940	0.64	-3.4
1,274,129	+		MMJJ_RS06940	0.64	-0.8
1,274,129	+		MMJJ_RS06940	0.64	-2.8
1,274,144	-		MMJJ_RS06940	0.69	-2.1
1,274,167	-		MMJJ_RS06940	0.77	-1.4
1,274,167	-		MMJJ_RS06940	0.77	-1.2
1,274,168	+		MMJJ_RS06940	0.77	-1.8
1,274,203	-		MMJJ_RS06940	0.89	-2.9
1,274,203	-		MMJJ_RS06940	0.89	-2.0
1,274,203	-		MMJJ_RS06940	0.89	-1.7
1,274,204	+		MMJJ_RS06940	0.90	-2.7
1,274,205	-				-1.9
1,274,206	+				-4.9
1,274,206	+				-2.4
1,274,206	+				-1.8
1,274,206	+				-0.4
1,274,206	+				-2.9
1,274,206	+				-4.4
1,274,211	-				-2.5
1,274,211	-				+0.2
1,274,211	-				+1.2
1,274,211	-				-1.9
1,274,217	-				+0.2
1,274,218	+				-0.8
1,274,225	-				-2.0
1,274,226	+				-3.5
1,274,226	+				-0.8
1,274,226	+				-2.3
1,274,226	+				-3.3
1,274,227	-				-2.5
1,274,252	-				-2.7
1,274,253	+				-2.7
1,274,255	-				+0.2
1,274,255	-				+0.4
1,274,255	-				-1.4
1,274,256	+				-2.1
1,274,256	+				-1.7
1,274,256	+				-1.7
1,274,257	-				+0.1
1,274,257	-				-4.7
1,274,257	-				+1.2
1,274,258	+				-3.6
1,274,258	+				-2.0
1,274,258	+				-3.8
1,274,317	-				+2.7
1,274,328	+				+1.2
1,274,404	-				+2.9
1,274,404	-				+1.8
1,274,404	-				+2.4
1,274,404	-				+3.5
1,274,404	-				+3.0
1,274,405	+				+1.8
1,274,405	+				-0.8
1,274,416	-		MMJJ_RS06945	0.10	+1.2
1,274,416	-		MMJJ_RS06945	0.10	+1.5
1,274,416	-		MMJJ_RS06945	0.10	+0.6
1,274,417	+		MMJJ_RS06945	0.11	+2.0
1,274,417	+		MMJJ_RS06945	0.11	+4.6
1,274,417	+		MMJJ_RS06945	0.11	+2.5
1,274,418	-		MMJJ_RS06945	0.11	+2.2
1,274,418	-		MMJJ_RS06945	0.11	+2.5
1,274,429	+		MMJJ_RS06945	0.12	+1.2
1,274,429	+		MMJJ_RS06945	0.12	+1.3
1,274,430	-				+1.2
1,274,477	+		MMJJ_RS06945	0.19	+2.9
1,274,499	-		MMJJ_RS06945	0.22	+2.4
1,274,499	-		MMJJ_RS06945	0.22	+2.1
1,274,500	+		MMJJ_RS06945	0.23	+1.9
1,274,500	+		MMJJ_RS06945	0.23	+3.5
1,274,517	-		MMJJ_RS06945	0.25	+2.3
1,274,517	-		MMJJ_RS06945	0.25	+2.1
1,274,561	-		MMJJ_RS06945	0.31	+2.5
1,274,589	+		MMJJ_RS06945	0.36	+2.4
1,274,600	+		MMJJ_RS06945	0.37	+3.1
1,274,601	-		MMJJ_RS06945	0.37	+3.5
1,274,635	-		MMJJ_RS06945	0.42	+0.9
1,274,635	-		MMJJ_RS06945	0.42	+2.2
1,274,684	+		MMJJ_RS06945	0.49	+3.3
1,274,711	+		MMJJ_RS06945	0.53	+1.2
1,274,711	+		MMJJ_RS06945	0.53	+2.3
1,274,727	-		MMJJ_RS06945	0.56	+3.4
1,274,731	-		MMJJ_RS06945	0.56	+2.9
1,274,761	-		MMJJ_RS06945	0.60	+0.8
1,274,762	+		MMJJ_RS06945	0.61	+2.7
1,274,762	+		MMJJ_RS06945	0.61	+2.1
1,274,762	+		MMJJ_RS06945	0.61	+2.7
1,274,822	-		MMJJ_RS06945	0.69	+1.3
1,274,881	+		MMJJ_RS06945	0.78	+1.2
1,274,931	-		MMJJ_RS06945	0.85	+0.9
1,274,978	+				+1.8
1,274,978	+				+0.4
1,274,980	-				+2.6
1,274,980	-				+1.9
1,274,981	+				+0.5
1,275,014	+				+1.3
1,275,019	-				+1.3
1,275,019	-				+1.1
1,275,019	-				+0.6
1,275,020	+				+2.6
1,275,020	+				+2.7
1,275,020	+				+1.4
1,275,020	+				+2.7
1,275,022	-				+1.2
1,275,022	-				+1.6
1,275,023	+				+0.8
1,275,023	+				+1.1
1,275,028	-				+0.7
1,275,033	-				+2.0
1,275,033	-				+3.1
1,275,034	+				+0.2
1,275,034	+				+1.6
1,275,039	+				+2.7
1,275,039	+				+3.9
1,275,042	-				+4.3
1,275,042	-				+1.4
1,275,043	+				+2.0
1,275,045	+				+2.5
1,275,048	+				+2.0
1,275,048	+				+1.7
1,275,057	-				+2.0
1,275,057	-				+1.4
1,275,058	+				+1.6
1,275,059	-				+1.3
1,275,060	+				+1.8
1,275,063	-				+2.0
1,275,064	+				+1.5
1,275,077	-				+2.5
1,275,077	-				+1.5
1,275,077	-				+0.5
1,275,078	+				-0.9
1,275,086	-				+0.6
1,275,086	-				-2.8
1,275,087	+				+1.2
1,275,092	+				-0.9
1,275,100	-				+2.1
1,275,100	-				+2.5
1,275,101	+				+1.2
1,275,105	+				-2.7
1,275,105	+				+2.1
1,275,108	+				+1.2
1,275,108	+				-1.7
1,275,112	+				-0.3
1,275,126	-				+1.5
1,275,126	-				-1.9
1,275,126	-				+0.2
1,275,127	+				+1.2
1,275,128	-				+0.3
1,275,128	-				+0.8
1,275,128	-				+0.4
1,275,136	-				-1.1
1,275,136	-				+1.6
1,275,137	+				+1.2
1,275,137	+				+1.6
1,275,141	+				-3.0
1,275,141	+				-2.4
1,275,157	-				-0.4
1,275,158	+				+0.9
1,275,164	-				+2.9
1,275,165	+				+1.8
1,275,191	+				+0.9