Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03010

Experiment: McCas_formate_complete Polymyxin B sulfate 0.05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03005 and MMJJ_RS03010 are separated by 89 nucleotidesMMJJ_RS03010 and MMJJ_RS03015 are separated by 83 nucleotides MMJJ_RS03005: MMJJ_RS03005 - Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit, at 562,071 to 563,171 _RS03005 MMJJ_RS03010: MMJJ_RS03010 - replication factor C small subunit, at 563,261 to 564,208 _RS03010 MMJJ_RS03015: MMJJ_RS03015 - Ig-like domain-containing protein, at 564,292 to 566,091 _RS03015 Position (kb) 563 564 565Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 562.277 kb on + strand, within MMJJ_RS03005at 562.277 kb on + strand, within MMJJ_RS03005at 562.412 kb on + strand, within MMJJ_RS03005at 562.803 kb on + strand, within MMJJ_RS03005at 562.820 kb on - strand, within MMJJ_RS03005at 562.826 kb on - strand, within MMJJ_RS03005at 562.866 kb on - strand, within MMJJ_RS03005at 562.867 kb on + strand, within MMJJ_RS03005at 563.027 kb on + strand, within MMJJ_RS03005at 563.057 kb on + strand, within MMJJ_RS03005at 563.069 kb on - strandat 563.070 kb on + strandat 563.197 kb on - strandat 563.198 kb on + strandat 563.826 kb on + strand, within MMJJ_RS03010at 563.866 kb on + strand, within MMJJ_RS03010at 564.083 kb on + strand, within MMJJ_RS03010at 564.244 kb on - strandat 564.286 kb on + strandat 564.293 kb on - strandat 564.301 kb on - strandat 564.359 kb on + strandat 564.376 kb on - strandat 564.377 kb on + strandat 564.415 kb on + strandat 564.416 kb on - strandat 564.416 kb on - strandat 564.416 kb on - strandat 564.416 kb on - strandat 564.416 kb on - strandat 564.416 kb on - strandat 564.416 kb on - strandat 564.416 kb on - strandat 564.417 kb on + strandat 564.417 kb on + strandat 564.417 kb on + strandat 564.417 kb on + strandat 564.417 kb on + strandat 564.417 kb on + strandat 564.421 kb on - strandat 564.422 kb on + strandat 564.428 kb on - strandat 564.428 kb on - strandat 564.462 kb on - strandat 564.462 kb on - strandat 564.463 kb on + strandat 564.536 kb on - strand, within MMJJ_RS03015at 564.536 kb on - strand, within MMJJ_RS03015at 564.537 kb on + strand, within MMJJ_RS03015at 564.537 kb on + strand, within MMJJ_RS03015at 564.617 kb on + strand, within MMJJ_RS03015at 564.617 kb on + strand, within MMJJ_RS03015at 564.641 kb on - strand, within MMJJ_RS03015at 564.667 kb on - strand, within MMJJ_RS03015at 564.668 kb on + strand, within MMJJ_RS03015at 564.696 kb on - strand, within MMJJ_RS03015at 564.697 kb on + strand, within MMJJ_RS03015at 564.711 kb on - strand, within MMJJ_RS03015at 564.712 kb on + strandat 564.712 kb on + strand, within MMJJ_RS03015at 564.771 kb on - strand, within MMJJ_RS03015at 564.772 kb on + strand, within MMJJ_RS03015at 564.772 kb on + strand, within MMJJ_RS03015at 564.787 kb on - strand, within MMJJ_RS03015at 564.788 kb on + strand, within MMJJ_RS03015at 564.788 kb on + strand, within MMJJ_RS03015at 564.788 kb on + strand, within MMJJ_RS03015at 564.852 kb on + strand, within MMJJ_RS03015at 564.852 kb on + strand, within MMJJ_RS03015at 564.888 kb on + strand, within MMJJ_RS03015at 564.890 kb on - strand, within MMJJ_RS03015at 564.891 kb on + strand, within MMJJ_RS03015at 564.921 kb on - strand, within MMJJ_RS03015at 565.005 kb on - strand, within MMJJ_RS03015at 565.005 kb on - strand, within MMJJ_RS03015at 565.005 kb on - strand, within MMJJ_RS03015at 565.005 kb on - strand, within MMJJ_RS03015at 565.006 kb on + strand, within MMJJ_RS03015at 565.007 kb on - strand, within MMJJ_RS03015at 565.007 kb on - strand, within MMJJ_RS03015at 565.007 kb on - strand, within MMJJ_RS03015at 565.007 kb on - strand, within MMJJ_RS03015at 565.008 kb on + strand, within MMJJ_RS03015at 565.008 kb on + strand, within MMJJ_RS03015at 565.038 kb on - strand, within MMJJ_RS03015

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete Polymyxin B sulfate 0.05 mM
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562,277 + MMJJ_RS03005 0.19 -0.8
562,277 + MMJJ_RS03005 0.19 -1.2
562,412 + MMJJ_RS03005 0.31 -1.5
562,803 + MMJJ_RS03005 0.66 -0.8
562,820 - MMJJ_RS03005 0.68 -0.2
562,826 - MMJJ_RS03005 0.69 -1.2
562,866 - MMJJ_RS03005 0.72 -0.2
562,867 + MMJJ_RS03005 0.72 -2.2
563,027 + MMJJ_RS03005 0.87 -0.2
563,057 + MMJJ_RS03005 0.90 -0.8
563,069 - -1.5
563,070 + +0.8
563,197 - -1.6
563,198 + +0.8
563,826 + MMJJ_RS03010 0.60 -1.2
563,866 + MMJJ_RS03010 0.64 -2.0
564,083 + MMJJ_RS03010 0.87 -0.8
564,244 - +0.1
564,286 + -1.5
564,293 - +0.1
564,301 - +0.4
564,359 + +2.7
564,376 - -0.4
564,377 + +3.2
564,415 + +0.4
564,416 - -2.4
564,416 - -1.4
564,416 - +2.3
564,416 - -2.0
564,416 - +1.2
564,416 - +1.6
564,416 - +1.4
564,416 - -3.2
564,417 + +1.1
564,417 + +1.8
564,417 + -3.2
564,417 + -2.0
564,417 + -0.2
564,417 + +0.2
564,421 - -1.8
564,422 + -0.4
564,428 - -0.2
564,428 - -3.3
564,462 - +0.7
564,462 - -2.6
564,463 + +1.4
564,536 - MMJJ_RS03015 0.14 +1.0
564,536 - MMJJ_RS03015 0.14 +0.4
564,537 + MMJJ_RS03015 0.14 -1.8
564,537 + MMJJ_RS03015 0.14 +2.8
564,617 + MMJJ_RS03015 0.18 +1.2
564,617 + MMJJ_RS03015 0.18 +0.4
564,641 - MMJJ_RS03015 0.19 +0.1
564,667 - MMJJ_RS03015 0.21 +0.4
564,668 + MMJJ_RS03015 0.21 +0.3
564,696 - MMJJ_RS03015 0.22 -0.1
564,697 + MMJJ_RS03015 0.23 +0.7
564,711 - MMJJ_RS03015 0.23 -2.1
564,712 + -0.2
564,712 + MMJJ_RS03015 0.23 -1.6
564,771 - MMJJ_RS03015 0.27 +1.5
564,772 + MMJJ_RS03015 0.27 -0.6
564,772 + MMJJ_RS03015 0.27 -0.4
564,787 - MMJJ_RS03015 0.28 -0.2
564,788 + MMJJ_RS03015 0.28 -1.8
564,788 + MMJJ_RS03015 0.28 +1.5
564,788 + MMJJ_RS03015 0.28 +1.6
564,852 + MMJJ_RS03015 0.31 -0.3
564,852 + MMJJ_RS03015 0.31 -2.5
564,888 + MMJJ_RS03015 0.33 -1.5
564,890 - MMJJ_RS03015 0.33 +2.8
564,891 + MMJJ_RS03015 0.33 +1.0
564,921 - MMJJ_RS03015 0.35 -0.5
565,005 - MMJJ_RS03015 0.40 -3.5
565,005 - MMJJ_RS03015 0.40 +0.3
565,005 - MMJJ_RS03015 0.40 -2.1
565,005 - MMJJ_RS03015 0.40 -0.2
565,006 + MMJJ_RS03015 0.40 -1.8
565,007 - MMJJ_RS03015 0.40 +1.8
565,007 - MMJJ_RS03015 0.40 -1.8
565,007 - MMJJ_RS03015 0.40 +0.5
565,007 - MMJJ_RS03015 0.40 -1.8
565,008 + MMJJ_RS03015 0.40 -0.4
565,008 + MMJJ_RS03015 0.40 -1.4
565,038 - MMJJ_RS03015 0.41 -1.9

Or see this region's nucleotide sequence