Experiment: McCas_formate_complete Polymyxin B sulfate 0.05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS01245 and MMJJ_RS01250 are separated by 36 nucleotides MMJJ_RS01250 and MMJJ_RS01255 are separated by 350 nucleotides MMJJ_RS01255 and MMJJ_RS01260 are separated by 8 nucleotides
MMJJ_RS01245: MMJJ_RS01245 - excinuclease ABC subunit UvrB, at 240,688 to 242,628
_RS01245
MMJJ_RS01250: MMJJ_RS01250 - hypothetical protein, at 242,665 to 242,898
_RS01250
MMJJ_RS01255: MMJJ_RS01255 - YqhA family protein, at 243,249 to 243,806
_RS01255
MMJJ_RS01260: MMJJ_RS01260 - hypothetical protein, at 243,815 to 244,159
_RS01260
Position (kb) 242
243 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 241.688 kb on - strand, within MMJJ_RS01245 at 241.732 kb on - strand, within MMJJ_RS01245 at 241.732 kb on - strand, within MMJJ_RS01245 at 241.733 kb on + strand, within MMJJ_RS01245 at 241.795 kb on - strand, within MMJJ_RS01245 at 241.796 kb on + strand, within MMJJ_RS01245 at 241.796 kb on + strand, within MMJJ_RS01245 at 241.796 kb on + strand, within MMJJ_RS01245 at 241.835 kb on + strand, within MMJJ_RS01245 at 241.835 kb on + strand, within MMJJ_RS01245 at 241.843 kb on + strand, within MMJJ_RS01245 at 241.847 kb on - strand, within MMJJ_RS01245 at 241.883 kb on - strand, within MMJJ_RS01245 at 241.884 kb on + strand, within MMJJ_RS01245 at 241.884 kb on + strand, within MMJJ_RS01245 at 241.888 kb on + strand, within MMJJ_RS01245 at 241.904 kb on - strand, within MMJJ_RS01245 at 241.904 kb on - strand, within MMJJ_RS01245 at 241.905 kb on + strand, within MMJJ_RS01245 at 241.953 kb on + strand, within MMJJ_RS01245 at 241.980 kb on - strand, within MMJJ_RS01245 at 242.027 kb on - strand, within MMJJ_RS01245 at 242.032 kb on + strand, within MMJJ_RS01245 at 242.071 kb on - strand, within MMJJ_RS01245 at 242.118 kb on + strand, within MMJJ_RS01245 at 242.118 kb on + strand, within MMJJ_RS01245 at 242.118 kb on + strand, within MMJJ_RS01245 at 242.118 kb on + strand, within MMJJ_RS01245 at 242.118 kb on + strand, within MMJJ_RS01245 at 242.121 kb on - strand, within MMJJ_RS01245 at 242.237 kb on - strand, within MMJJ_RS01245 at 242.331 kb on + strand, within MMJJ_RS01245 at 242.361 kb on - strand, within MMJJ_RS01245 at 242.447 kb on - strand at 242.468 kb on - strand at 242.486 kb on - strand at 242.545 kb on - strand at 242.546 kb on + strand at 242.631 kb on - strand at 242.649 kb on - strand at 242.678 kb on - strand at 242.679 kb on + strand at 242.693 kb on + strand, within MMJJ_RS01250 at 242.698 kb on - strand, within MMJJ_RS01250 at 242.719 kb on + strand, within MMJJ_RS01250 at 242.719 kb on + strand, within MMJJ_RS01250 at 242.731 kb on - strand, within MMJJ_RS01250 at 242.732 kb on + strand, within MMJJ_RS01250 at 242.732 kb on + strand, within MMJJ_RS01250 at 242.849 kb on - strand, within MMJJ_RS01250 at 242.849 kb on - strand, within MMJJ_RS01250 at 242.849 kb on - strand, within MMJJ_RS01250 at 242.854 kb on - strand, within MMJJ_RS01250 at 242.854 kb on - strand, within MMJJ_RS01250 at 242.890 kb on - strand at 242.891 kb on + strand at 242.920 kb on - strand at 242.934 kb on + strand at 242.937 kb on - strand at 242.940 kb on - strand at 242.940 kb on - strand at 242.941 kb on + strand at 242.941 kb on + strand at 242.942 kb on - strand at 242.943 kb on + strand at 242.943 kb on + strand at 242.945 kb on + strand at 242.945 kb on + strand at 242.945 kb on - strand at 242.966 kb on - strand at 242.966 kb on - strand at 242.966 kb on - strand at 242.969 kb on - strand at 242.969 kb on - strand at 242.969 kb on - strand at 242.970 kb on + strand at 242.971 kb on - strand at 242.972 kb on + strand at 242.986 kb on - strand at 243.019 kb on + strand at 243.025 kb on - strand at 243.025 kb on - strand at 243.026 kb on + strand at 243.030 kb on - strand at 243.030 kb on - strand at 243.031 kb on + strand at 243.031 kb on + strand at 243.036 kb on - strand at 243.037 kb on + strand at 243.103 kb on - strand at 243.103 kb on - strand at 243.103 kb on - strand at 243.118 kb on - strand at 243.121 kb on + strand at 243.121 kb on + strand at 243.121 kb on + strand at 243.123 kb on - strand at 243.123 kb on - strand at 243.124 kb on + strand at 243.124 kb on + strand at 243.124 kb on + strand at 243.124 kb on + strand at 243.147 kb on + strand at 243.160 kb on - strand at 243.165 kb on + strand at 243.168 kb on - strand at 243.169 kb on + strand at 243.169 kb on + strand at 243.173 kb on - strand at 243.174 kb on + strand at 243.177 kb on - strand at 243.177 kb on - strand at 243.178 kb on + strand at 243.214 kb on - strand at 243.217 kb on + strand at 243.224 kb on - strand at 243.225 kb on + strand at 243.236 kb on - strand at 243.236 kb on - strand at 243.248 kb on - strand at 243.293 kb on - strand at 243.296 kb on - strand at 243.296 kb on - strand at 243.297 kb on + strand at 243.353 kb on - strand, within MMJJ_RS01255 at 243.395 kb on - strand, within MMJJ_RS01255 at 243.395 kb on - strand, within MMJJ_RS01255 at 243.441 kb on + strand, within MMJJ_RS01255 at 243.459 kb on + strand, within MMJJ_RS01255 at 243.485 kb on + strand, within MMJJ_RS01255 at 243.487 kb on - strand, within MMJJ_RS01255 at 243.509 kb on + strand, within MMJJ_RS01255 at 243.520 kb on - strand, within MMJJ_RS01255 at 243.523 kb on - strand, within MMJJ_RS01255 at 243.532 kb on - strand, within MMJJ_RS01255 at 243.533 kb on + strand, within MMJJ_RS01255 at 243.545 kb on - strand, within MMJJ_RS01255 at 243.559 kb on + strand, within MMJJ_RS01255 at 243.559 kb on + strand, within MMJJ_RS01255 at 243.580 kb on - strand, within MMJJ_RS01255 at 243.615 kb on + strand, within MMJJ_RS01255 at 243.628 kb on + strand, within MMJJ_RS01255 at 243.629 kb on - strand, within MMJJ_RS01255 at 243.629 kb on - strand, within MMJJ_RS01255 at 243.665 kb on - strand, within MMJJ_RS01255 at 243.667 kb on - strand, within MMJJ_RS01255 at 243.668 kb on + strand, within MMJJ_RS01255 at 243.668 kb on + strand, within MMJJ_RS01255 at 243.671 kb on + strand, within MMJJ_RS01255 at 243.679 kb on - strand, within MMJJ_RS01255 at 243.679 kb on - strand, within MMJJ_RS01255 at 243.730 kb on - strand, within MMJJ_RS01255 at 243.734 kb on - strand, within MMJJ_RS01255 at 243.735 kb on + strand, within MMJJ_RS01255 at 243.739 kb on - strand, within MMJJ_RS01255 at 243.739 kb on - strand, within MMJJ_RS01255 at 243.740 kb on + strand, within MMJJ_RS01255 at 243.740 kb on + strand, within MMJJ_RS01255 at 243.740 kb on + strand, within MMJJ_RS01255 at 243.741 kb on - strand, within MMJJ_RS01255 at 243.741 kb on - strand, within MMJJ_RS01255 at 243.741 kb on - strand, within MMJJ_RS01255 at 243.741 kb on - strand, within MMJJ_RS01255 at 243.741 kb on - strand, within MMJJ_RS01255 at 243.741 kb on - strand, within MMJJ_RS01255 at 243.741 kb on - strand, within MMJJ_RS01255 at 243.742 kb on + strand, within MMJJ_RS01255 at 243.742 kb on + strand, within MMJJ_RS01255 at 243.742 kb on + strand, within MMJJ_RS01255 at 243.742 kb on + strand, within MMJJ_RS01255 at 243.742 kb on + strand, within MMJJ_RS01255 at 243.742 kb on + strand, within MMJJ_RS01255 at 243.742 kb on + strand, within MMJJ_RS01255 at 243.742 kb on + strand, within MMJJ_RS01255 at 243.742 kb on + strand, within MMJJ_RS01255 at 243.742 kb on + strand, within MMJJ_RS01255 at 243.742 kb on + strand, within MMJJ_RS01255 at 243.742 kb on + strand, within MMJJ_RS01255 at 243.742 kb on + strand, within MMJJ_RS01255 at 243.742 kb on + strand, within MMJJ_RS01255 at 243.742 kb on + strand, within MMJJ_RS01255 at 243.743 kb on - strand, within MMJJ_RS01255 at 243.743 kb on - strand, within MMJJ_RS01255 at 243.743 kb on - strand, within MMJJ_RS01255 at 243.744 kb on + strand, within MMJJ_RS01255 at 243.744 kb on + strand, within MMJJ_RS01255 at 243.805 kb on + strand at 243.820 kb on + strand at 243.820 kb on + strand at 243.834 kb on + strand at 243.863 kb on + strand, within MMJJ_RS01260
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete Polymyxin B sulfate 0.05 mM remove 241,688 - MMJJ_RS01245 0.52 -3.2 241,732 - MMJJ_RS01245 0.54 +0.2 241,732 - MMJJ_RS01245 0.54 -0.4 241,733 + MMJJ_RS01245 0.54 -4.0 241,795 - MMJJ_RS01245 0.57 +1.4 241,796 + MMJJ_RS01245 0.57 +1.4 241,796 + MMJJ_RS01245 0.57 -2.5 241,796 + MMJJ_RS01245 0.57 +0.2 241,835 + MMJJ_RS01245 0.59 -2.2 241,835 + MMJJ_RS01245 0.59 -0.4 241,843 + MMJJ_RS01245 0.60 -0.6 241,847 - MMJJ_RS01245 0.60 -1.8 241,883 - MMJJ_RS01245 0.62 +1.5 241,884 + MMJJ_RS01245 0.62 -0.2 241,884 + MMJJ_RS01245 0.62 +1.8 241,888 + MMJJ_RS01245 0.62 +2.6 241,904 - MMJJ_RS01245 0.63 -1.2 241,904 - MMJJ_RS01245 0.63 +2.9 241,905 + MMJJ_RS01245 0.63 -2.4 241,953 + MMJJ_RS01245 0.65 -1.1 241,980 - MMJJ_RS01245 0.67 +0.2 242,027 - MMJJ_RS01245 0.69 +0.2 242,032 + MMJJ_RS01245 0.69 +0.4 242,071 - MMJJ_RS01245 0.71 -1.9 242,118 + MMJJ_RS01245 0.74 -0.1 242,118 + MMJJ_RS01245 0.74 +0.5 242,118 + MMJJ_RS01245 0.74 +0.6 242,118 + MMJJ_RS01245 0.74 +1.7 242,118 + MMJJ_RS01245 0.74 -2.1 242,121 - MMJJ_RS01245 0.74 +3.9 242,237 - MMJJ_RS01245 0.80 +0.1 242,331 + MMJJ_RS01245 0.85 -0.2 242,361 - MMJJ_RS01245 0.86 +1.1 242,447 - -1.9 242,468 - +1.3 242,486 - +0.7 242,545 - +1.0 242,546 + -2.2 242,631 - +1.9 242,649 - +0.9 242,678 - +3.0 242,679 + +0.9 242,693 + MMJJ_RS01250 0.12 +1.5 242,698 - MMJJ_RS01250 0.14 +0.6 242,719 + MMJJ_RS01250 0.23 +2.0 242,719 + MMJJ_RS01250 0.23 +1.1 242,731 - MMJJ_RS01250 0.28 +1.0 242,732 + MMJJ_RS01250 0.29 -1.4 242,732 + MMJJ_RS01250 0.29 +1.0 242,849 - MMJJ_RS01250 0.79 -1.0 242,849 - MMJJ_RS01250 0.79 -1.0 242,849 - MMJJ_RS01250 0.79 +1.8 242,854 - MMJJ_RS01250 0.81 -3.7 242,854 - MMJJ_RS01250 0.81 -0.4 242,890 - +0.6 242,891 + +1.5 242,920 - +0.0 242,934 + -2.8 242,937 - +0.1 242,940 - +5.3 242,940 - +1.8 242,941 + +0.3 242,941 + -2.8 242,942 - +0.8 242,943 + -0.7 242,943 + +2.1 242,945 + +0.1 242,945 + +0.3 242,945 - -0.8 242,966 - +0.2 242,966 - +1.5 242,966 - +0.7 242,969 - +0.8 242,969 - -0.4 242,969 - -0.6 242,970 + -0.2 242,971 - -3.1 242,972 + +2.1 242,986 - -1.0 243,019 + -0.3 243,025 - -1.4 243,025 - +1.0 243,026 + +0.6 243,030 - -3.3 243,030 - -2.3 243,031 + -0.8 243,031 + -0.8 243,036 - +0.6 243,037 + -1.6 243,103 - -1.8 243,103 - +0.4 243,103 - -1.8 243,118 - -1.0 243,121 + +3.2 243,121 + -0.6 243,121 + +1.2 243,123 - +1.4 243,123 - -1.0 243,124 + +4.1 243,124 + -0.7 243,124 + -0.7 243,124 + -0.0 243,147 + +1.6 243,160 - +0.3 243,165 + +0.6 243,168 - +1.4 243,169 + -3.2 243,169 + -0.4 243,173 - +1.5 243,174 + -0.7 243,177 - +1.3 243,177 - -0.9 243,178 + +1.8 243,214 - +1.5 243,217 + +1.3 243,224 - +1.8 243,225 + -1.5 243,236 - +1.6 243,236 - -0.9 243,248 - -0.1 243,293 - +1.6 243,296 - -1.4 243,296 - -0.7 243,297 + +2.0 243,353 - MMJJ_RS01255 0.19 +0.7 243,395 - MMJJ_RS01255 0.26 -0.8 243,395 - MMJJ_RS01255 0.26 +0.2 243,441 + MMJJ_RS01255 0.34 +1.1 243,459 + MMJJ_RS01255 0.38 +1.2 243,485 + MMJJ_RS01255 0.42 +1.7 243,487 - MMJJ_RS01255 0.43 -2.8 243,509 + MMJJ_RS01255 0.47 +1.4 243,520 - MMJJ_RS01255 0.49 -3.0 243,523 - MMJJ_RS01255 0.49 +1.4 243,532 - MMJJ_RS01255 0.51 -0.4 243,533 + MMJJ_RS01255 0.51 +0.9 243,545 - MMJJ_RS01255 0.53 +2.6 243,559 + MMJJ_RS01255 0.56 +1.5 243,559 + MMJJ_RS01255 0.56 -0.2 243,580 - MMJJ_RS01255 0.59 -0.2 243,615 + MMJJ_RS01255 0.66 +0.2 243,628 + MMJJ_RS01255 0.68 +2.3 243,629 - MMJJ_RS01255 0.68 +3.5 243,629 - MMJJ_RS01255 0.68 +1.7 243,665 - MMJJ_RS01255 0.75 +2.0 243,667 - MMJJ_RS01255 0.75 -0.4 243,668 + MMJJ_RS01255 0.75 -3.2 243,668 + MMJJ_RS01255 0.75 +1.9 243,671 + MMJJ_RS01255 0.76 -0.1 243,679 - MMJJ_RS01255 0.77 +0.8 243,679 - MMJJ_RS01255 0.77 +0.5 243,730 - MMJJ_RS01255 0.86 -2.9 243,734 - MMJJ_RS01255 0.87 +0.0 243,735 + MMJJ_RS01255 0.87 +2.2 243,739 - MMJJ_RS01255 0.88 +2.0 243,739 - MMJJ_RS01255 0.88 +1.1 243,740 + MMJJ_RS01255 0.88 +1.9 243,740 + MMJJ_RS01255 0.88 -1.8 243,740 + MMJJ_RS01255 0.88 -0.7 243,741 - MMJJ_RS01255 0.88 +1.1 243,741 - MMJJ_RS01255 0.88 -0.4 243,741 - MMJJ_RS01255 0.88 +2.2 243,741 - MMJJ_RS01255 0.88 +1.1 243,741 - MMJJ_RS01255 0.88 -1.1 243,741 - MMJJ_RS01255 0.88 -1.4 243,741 - MMJJ_RS01255 0.88 -1.8 243,742 + MMJJ_RS01255 0.88 +1.3 243,742 + MMJJ_RS01255 0.88 +0.7 243,742 + MMJJ_RS01255 0.88 -1.0 243,742 + MMJJ_RS01255 0.88 -0.3 243,742 + MMJJ_RS01255 0.88 -2.6 243,742 + MMJJ_RS01255 0.88 +2.4 243,742 + MMJJ_RS01255 0.88 +3.0 243,742 + MMJJ_RS01255 0.88 +1.4 243,742 + MMJJ_RS01255 0.88 +0.8 243,742 + MMJJ_RS01255 0.88 -2.4 243,742 + MMJJ_RS01255 0.88 -1.6 243,742 + MMJJ_RS01255 0.88 +0.1 243,742 + MMJJ_RS01255 0.88 +1.2 243,742 + MMJJ_RS01255 0.88 -1.6 243,742 + MMJJ_RS01255 0.88 +0.1 243,743 - MMJJ_RS01255 0.89 +2.3 243,743 - MMJJ_RS01255 0.89 +2.1 243,743 - MMJJ_RS01255 0.89 -1.3 243,744 + MMJJ_RS01255 0.89 +0.1 243,744 + MMJJ_RS01255 0.89 -2.6 243,805 + +0.1 243,820 + -1.8 243,820 + +0.7 243,834 + +3.1 243,863 + MMJJ_RS01260 0.14 +2.4
Or see this region's nucleotide sequence