Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00720

Experiment: McCas_formate_complete Polymyxin B sulfate 0.05 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete Polymyxin B sulfate 0.05 mM
138,947	-		MMJJ_RS00710	0.41	+0.7
138,947	-		MMJJ_RS00710	0.41	+1.0
138,952	+		MMJJ_RS00710	0.42	+0.1
138,982	-		MMJJ_RS00710	0.48	-0.1
138,982	-		MMJJ_RS00710	0.48	-0.1
138,983	+		MMJJ_RS00710	0.48	+0.9
139,001	+		MMJJ_RS00710	0.52	+1.4
139,078	+		MMJJ_RS00710	0.68	-0.4
139,082	+		MMJJ_RS00710	0.69	+0.5
139,096	+		MMJJ_RS00710	0.72	+0.4
139,151	+		MMJJ_RS00710	0.83	+2.4
139,151	+		MMJJ_RS00710	0.83	-0.0
139,152	-		MMJJ_RS00710	0.83	+0.6
139,153	+		MMJJ_RS00710	0.84	-0.7
139,153	+		MMJJ_RS00710	0.84	-3.5
139,156	-		MMJJ_RS00710	0.84	-1.9
139,157	+		MMJJ_RS00710	0.84	-0.3
139,172	-		MMJJ_RS00710	0.88	+2.9
139,172	-		MMJJ_RS00710	0.88	+0.0
139,172	-		MMJJ_RS00710	0.88	+2.2
139,172	-		MMJJ_RS00710	0.88	+0.3
139,173	+		MMJJ_RS00710	0.88	+0.4
139,173	+		MMJJ_RS00710	0.88	-1.4
139,186	+				-0.6
139,201	-				-1.7
139,201	-				+1.9
139,202	+				+1.9
139,203	-				-1.2
139,203	-				+2.3
139,203	-				+0.4
139,203	-				-0.4
139,203	-				+1.5
139,204	+				+3.0
139,204	+				-0.1
139,204	+				+0.6
139,204	+				+1.8
139,262	-				+1.0
139,262	-				-2.7
139,262	-				-0.5
139,263	+				+3.0
139,263	+				+0.8
139,263	+				+1.3
139,265	-				-2.3
139,265	-				+1.5
139,371	+		MMJJ_RS00715	0.18	-1.1
139,374	-		MMJJ_RS00715	0.18	+1.2
139,375	+		MMJJ_RS00715	0.18	-3.6
139,402	-		MMJJ_RS00715	0.23	+2.4
139,435	-		MMJJ_RS00715	0.28	-1.6
139,436	+		MMJJ_RS00715	0.28	-0.4
139,459	-		MMJJ_RS00715	0.32	-0.3
139,460	+		MMJJ_RS00715	0.32	-1.5
139,460	+		MMJJ_RS00715	0.32	+0.7
139,460	+		MMJJ_RS00715	0.32	-3.2
139,484	-		MMJJ_RS00715	0.36	+0.6
139,485	+		MMJJ_RS00715	0.36	-3.9
139,549	+		MMJJ_RS00715	0.46	-0.9
139,589	+		MMJJ_RS00715	0.52	-2.0
139,600	-		MMJJ_RS00715	0.54	-1.2
139,690	+		MMJJ_RS00715	0.68	+4.4
139,717	+		MMJJ_RS00715	0.73	-2.1
139,720	-		MMJJ_RS00715	0.73	+3.0
139,723	-		MMJJ_RS00715	0.74	+1.1
139,723	-		MMJJ_RS00715	0.74	-0.1
139,726	+		MMJJ_RS00715	0.74	-3.1
139,755	-		MMJJ_RS00715	0.79	+0.6
139,756	+		MMJJ_RS00715	0.79	-0.1
139,762	+		MMJJ_RS00715	0.80	+2.2
139,767	+		MMJJ_RS00715	0.81	+1.3
139,789	+		MMJJ_RS00715	0.84	-1.3
139,789	+		MMJJ_RS00715	0.84	+0.1
139,841	+				-1.6
139,849	-				-0.9
139,854	+				-1.7
139,856	-				+2.7
139,859	+				+1.3
139,879	-				-0.9
139,919	+				-0.6
139,924	+				+1.3
139,936	+				+2.0
139,942	-				+0.4
139,946	-				+0.7
139,946	-				+1.1
139,946	-				-3.4
139,962	+				-0.9
139,963	-				+0.9
139,963	-				+0.6
139,964	+				+1.0
139,964	+				-0.0
140,001	-				+3.3
140,001	-				+1.8
140,002	+				+1.6
140,002	+				+1.1
140,002	+				+4.9
140,022	-				+2.1
140,056	+		MMJJ_RS00720	0.10	-0.2
140,118	-		MMJJ_RS00720	0.15	-1.4
140,118	-		MMJJ_RS00720	0.15	-1.4
140,119	+		MMJJ_RS00720	0.15	-2.2
140,120	-		MMJJ_RS00720	0.15	-4.5
140,249	-		MMJJ_RS00720	0.26	-2.2
140,280	-		MMJJ_RS00720	0.28	-1.4
140,280	-		MMJJ_RS00720	0.28	+3.0
140,281	+		MMJJ_RS00720	0.28	+0.8
140,307	-		MMJJ_RS00720	0.30	+1.3
140,342	-		MMJJ_RS00720	0.33	-2.2
140,343	+		MMJJ_RS00720	0.33	-1.0
140,343	+		MMJJ_RS00720	0.33	-2.7
140,347	+		MMJJ_RS00720	0.33	-0.6
140,364	+		MMJJ_RS00720	0.35	+0.2
140,364	+		MMJJ_RS00720	0.35	+0.4
140,364	+		MMJJ_RS00720	0.35	+0.8
140,364	+		MMJJ_RS00720	0.35	+0.4
140,366	-		MMJJ_RS00720	0.35	+3.1
140,366	-		MMJJ_RS00720	0.35	-0.4
140,366	-		MMJJ_RS00720	0.35	-3.8
140,366	-		MMJJ_RS00720	0.35	-3.6
140,366	-		MMJJ_RS00720	0.35	+1.6
140,376	-		MMJJ_RS00720	0.36	-1.7
140,376	-		MMJJ_RS00720	0.36	+0.5
140,376	-		MMJJ_RS00720	0.36	+0.6
140,377	+		MMJJ_RS00720	0.36	+0.6
140,378	-		MMJJ_RS00720	0.36	+1.7
140,378	-		MMJJ_RS00720	0.36	-2.8
140,381	-		MMJJ_RS00720	0.36	-0.7
140,382	+		MMJJ_RS00720	0.36	+1.2
140,408	+		MMJJ_RS00720	0.38	+0.7
140,408	+		MMJJ_RS00720	0.38	-1.6
140,410	+		MMJJ_RS00720	0.38	-2.0
140,412	-		MMJJ_RS00720	0.39	+1.1
140,412	-		MMJJ_RS00720	0.39	+2.3
140,412	-		MMJJ_RS00720	0.39	+1.0
140,412	-		MMJJ_RS00720	0.39	-0.2
140,413	+		MMJJ_RS00720	0.39	-1.9
140,413	+		MMJJ_RS00720	0.39	+0.7
140,439	-		MMJJ_RS00720	0.41	-1.0
140,439	-		MMJJ_RS00720	0.41	+3.5
140,440	+		MMJJ_RS00720	0.41	+0.6
140,459	-		MMJJ_RS00720	0.42	+0.0
140,484	-		MMJJ_RS00720	0.44	-3.4
140,484	-		MMJJ_RS00720	0.44	-0.6
140,485	+		MMJJ_RS00720	0.44	-0.9
140,494	-		MMJJ_RS00720	0.45	-0.2
140,494	-		MMJJ_RS00720	0.45	-3.5
140,499	-		MMJJ_RS00720	0.45	+0.1
140,499	-		MMJJ_RS00720	0.45	-2.4
140,499	-		MMJJ_RS00720	0.45	+0.5
140,499	-		MMJJ_RS00720	0.45	+3.7
140,514	-		MMJJ_RS00720	0.47	-3.1
140,514	-		MMJJ_RS00720	0.47	-2.9
140,514	-		MMJJ_RS00720	0.47	-0.2
140,514	-		MMJJ_RS00720	0.47	-0.6
140,515	+		MMJJ_RS00720	0.47	-2.1
140,520	-		MMJJ_RS00720	0.47	-2.2
140,523	-		MMJJ_RS00720	0.47	-1.3
140,524	+		MMJJ_RS00720	0.47	+1.1
140,524	+		MMJJ_RS00720	0.47	+1.3
140,598	+		MMJJ_RS00720	0.53	+1.5
140,632	+		MMJJ_RS00720	0.56	+0.1
140,632	+		MMJJ_RS00720	0.56	-2.7
140,632	+		MMJJ_RS00720	0.56	+1.5
140,632	+		MMJJ_RS00720	0.56	-1.1
140,632	+		MMJJ_RS00720	0.56	+0.9
140,642	-		MMJJ_RS00720	0.57	+0.8
140,643	+		MMJJ_RS00720	0.57	+0.9
140,709	-		MMJJ_RS00720	0.62	+0.3
140,709	-		MMJJ_RS00720	0.62	+0.4
140,715	-		MMJJ_RS00720	0.63	-0.2
140,715	-		MMJJ_RS00720	0.63	+0.5
140,738	-		MMJJ_RS00720	0.65	+3.1
140,753	-		MMJJ_RS00720	0.66	-1.1
140,848	+		MMJJ_RS00720	0.73	+0.8
140,848	+		MMJJ_RS00720	0.73	+0.6
140,887	+		MMJJ_RS00720	0.76	-1.5
140,910	-		MMJJ_RS00720	0.78	-0.4
140,911	+		MMJJ_RS00720	0.78	+1.9
140,911	+		MMJJ_RS00720	0.78	+1.4
140,911	+		MMJJ_RS00720	0.78	-1.4
140,917	-		MMJJ_RS00720	0.79	-2.2
140,917	-		MMJJ_RS00720	0.79	-0.4
140,918	+		MMJJ_RS00720	0.79	+0.7
140,918	+		MMJJ_RS00720	0.79	+0.9
140,918	+		MMJJ_RS00720	0.79	+0.1
140,920	-		MMJJ_RS00720	0.79	-0.2
140,921	+		MMJJ_RS00720	0.79	-3.1
140,921	+		MMJJ_RS00720	0.79	-0.0
140,928	-		MMJJ_RS00720	0.80	+0.6
140,939	+		MMJJ_RS00720	0.81	-1.7
141,004	+		MMJJ_RS00720	0.86	-2.0
141,019	-		MMJJ_RS00720	0.87	+1.2
141,038	-		MMJJ_RS00720	0.88	+1.4
141,039	+		MMJJ_RS00720	0.89	-1.4
141,070	-				-1.0
141,070	-				+2.4
141,071	+				-1.0
141,089	+				+0.3
141,094	+				-0.5
141,094	+				+2.5
141,105	-				-2.4
141,106	+				+0.5
141,106	+				+0.6
141,111	-				+1.2
141,112	+				+0.2
141,155	-				+0.1
141,155	-				-0.7
141,155	-				-0.9
141,156	+				-2.2
141,156	+				+1.1
141,156	+				-0.8
141,158	+				-2.9
141,183	+				-1.1
141,194	-				+1.4
141,204	-				+1.9
141,205	+				+1.2
141,209	+				+0.9
141,228	+				+0.5
141,232	-				+1.4
141,243	-				+0.5
141,243	-				-0.2
141,247	+				+1.4
141,288	+				+1.3
141,312	-		MMJJ_RS00725	0.11	+0.9
141,313	+		MMJJ_RS00725	0.11	-0.2
141,313	+		MMJJ_RS00725	0.11	-1.6
141,365	-		MMJJ_RS00725	0.19	-3.6
141,366	+		MMJJ_RS00725	0.19	-1.9
141,387	+		MMJJ_RS00725	0.23	-0.5
141,419	-		MMJJ_RS00725	0.28	-0.5
141,423	+		MMJJ_RS00725	0.29	-2.7
141,510	+		MMJJ_RS00725	0.42	+0.9
141,572	-		MMJJ_RS00725	0.52	+2.9
141,575	-		MMJJ_RS00725	0.53	+1.8
141,613	+		MMJJ_RS00725	0.59	+0.8
141,621	-		MMJJ_RS00725	0.60	-1.8
141,641	-		MMJJ_RS00725	0.63	-1.7
141,649	-		MMJJ_RS00725	0.65	-2.3
141,669	-		MMJJ_RS00725	0.68	+0.9
141,713	-		MMJJ_RS00725	0.75	+2.6
141,713	-		MMJJ_RS00725	0.75	-1.4
141,714	+		MMJJ_RS00725	0.75	-2.6
141,715	-		MMJJ_RS00725	0.75	+2.0
141,715	-		MMJJ_RS00725	0.75	+1.8
141,715	-		MMJJ_RS00725	0.75	-1.4
141,715	-		MMJJ_RS00725	0.75	-2.5
141,716	+		MMJJ_RS00725	0.75	+1.2
141,716	+		MMJJ_RS00725	0.75	+0.3
141,716	+		MMJJ_RS00725	0.75	-1.8
141,724	-		MMJJ_RS00725	0.77	-0.7
141,772	-		MMJJ_RS00725	0.84	-1.3
141,785	-		MMJJ_RS00725	0.87	-2.4
141,786	+		MMJJ_RS00725	0.87	+0.8
141,786	+		MMJJ_RS00725	0.87	-0.3
141,791	-		MMJJ_RS00725	0.88	+0.6
141,792	+		MMJJ_RS00725	0.88	-1.7
141,794	-		MMJJ_RS00725	0.88	-3.3
141,794	-		MMJJ_RS00725	0.88	-1.4
141,794	-		MMJJ_RS00725	0.88	+0.6
141,795	+		MMJJ_RS00725	0.88	+2.0
141,818	+				-2.4
141,818	+				-2.7
141,857	+				-0.1
141,857	+				+0.0
141,891	-				+1.5
141,899	-				+0.8
141,899	-				+1.0
141,899	-				+2.5
141,900	+				+1.2
141,903	-				+1.4
141,904	+				+1.9
141,904	+				+0.1
141,904	+				-1.4
141,912	-				+1.7
141,913	+				+0.6
141,973	-				-2.7
141,974	+				-1.4
141,974	+				+0.4
141,992	-				-0.3
141,992	-				+0.5
141,993	+				+1.0
141,993	+				+0.9
141,993	+				+0.2
141,993	+				+2.0
142,004	-				+0.2
142,005	+				+2.7
142,005	+				+0.3
142,005	+				-1.7
142,008	-				-2.6
142,009	+				-3.3
142,043	+				+0.2
142,061	-				+0.8
142,077	+				-1.2
142,077	+				-1.1
142,077	+				+0.2
142,096	-				+0.7
142,097	+				+0.6
142,100	+				+1.6
142,100	+				+1.4
142,101	-				+0.8
142,181	+		MMJJ_RS00730	0.12	-2.0