Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19285 and IAI47_19290 overlap by 4 nucleotides IAI47_19290 and IAI47_19295 are separated by 83 nucleotides IAI47_19295 and IAI47_19300 are separated by 1 nucleotides IAI47_19300 and IAI47_19305 are separated by 12 nucleotides
IAI47_19285: IAI47_19285 - AzlC family ABC transporter permease, at 84,428 to 85,144
_19285
IAI47_19290: IAI47_19290 - AzlD family protein, at 85,141 to 85,437
_19290
IAI47_19295: IAI47_19295 - hypothetical protein, at 85,521 to 85,682
_19295
IAI47_19300: IAI47_19300 - hypothetical protein, at 85,684 to 86,205
_19300
IAI47_19305: IAI47_19305 - alpha/beta hydrolase, at 86,218 to 86,895
_19305
Position (kb) 85
86 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 84.612 kb on + strand, within IAI47_19285 at 84.612 kb on + strand, within IAI47_19285 at 84.612 kb on + strand, within IAI47_19285 at 84.612 kb on + strand, within IAI47_19285 at 84.612 kb on + strand, within IAI47_19285 at 84.612 kb on + strand, within IAI47_19285 at 84.612 kb on + strand, within IAI47_19285 at 84.612 kb on + strand, within IAI47_19285 at 84.613 kb on - strand, within IAI47_19285 at 84.613 kb on - strand, within IAI47_19285 at 84.613 kb on - strand, within IAI47_19285 at 84.613 kb on - strand, within IAI47_19285 at 84.613 kb on - strand, within IAI47_19285 at 84.613 kb on - strand, within IAI47_19285 at 84.613 kb on - strand, within IAI47_19285 at 84.649 kb on + strand, within IAI47_19285 at 84.650 kb on - strand, within IAI47_19285 at 84.671 kb on - strand, within IAI47_19285 at 84.687 kb on + strand, within IAI47_19285 at 84.687 kb on + strand, within IAI47_19285 at 84.688 kb on - strand, within IAI47_19285 at 84.688 kb on - strand, within IAI47_19285 at 84.688 kb on - strand, within IAI47_19285 at 84.688 kb on - strand, within IAI47_19285 at 84.710 kb on + strand, within IAI47_19285 at 84.710 kb on + strand, within IAI47_19285 at 84.710 kb on + strand, within IAI47_19285 at 84.711 kb on - strand, within IAI47_19285 at 84.711 kb on - strand, within IAI47_19285 at 84.711 kb on - strand, within IAI47_19285 at 84.711 kb on - strand, within IAI47_19285 at 84.711 kb on - strand, within IAI47_19285 at 84.711 kb on - strand, within IAI47_19285 at 84.711 kb on - strand, within IAI47_19285 at 84.712 kb on + strand, within IAI47_19285 at 84.713 kb on - strand, within IAI47_19285 at 84.713 kb on - strand, within IAI47_19285 at 84.713 kb on - strand, within IAI47_19285 at 84.713 kb on - strand, within IAI47_19285 at 84.713 kb on - strand, within IAI47_19285 at 84.738 kb on + strand, within IAI47_19285 at 84.741 kb on + strand, within IAI47_19285 at 84.741 kb on + strand, within IAI47_19285 at 84.742 kb on - strand, within IAI47_19285 at 84.757 kb on + strand, within IAI47_19285 at 84.785 kb on + strand, within IAI47_19285 at 84.785 kb on + strand, within IAI47_19285 at 84.785 kb on + strand, within IAI47_19285 at 84.786 kb on - strand, within IAI47_19285 at 84.786 kb on - strand, within IAI47_19285 at 84.835 kb on + strand, within IAI47_19285 at 84.835 kb on + strand, within IAI47_19285 at 84.836 kb on - strand, within IAI47_19285 at 84.845 kb on + strand, within IAI47_19285 at 84.845 kb on + strand, within IAI47_19285 at 84.845 kb on + strand, within IAI47_19285 at 84.845 kb on + strand, within IAI47_19285 at 84.845 kb on + strand, within IAI47_19285 at 84.845 kb on + strand, within IAI47_19285 at 84.845 kb on + strand, within IAI47_19285 at 84.845 kb on + strand, within IAI47_19285 at 84.845 kb on + strand, within IAI47_19285 at 84.845 kb on + strand, within IAI47_19285 at 84.845 kb on + strand, within IAI47_19285 at 84.846 kb on - strand, within IAI47_19285 at 84.846 kb on - strand, within IAI47_19285 at 84.846 kb on - strand, within IAI47_19285 at 84.846 kb on - strand, within IAI47_19285 at 84.846 kb on - strand, within IAI47_19285 at 84.846 kb on - strand, within IAI47_19285 at 84.846 kb on - strand, within IAI47_19285 at 84.846 kb on - strand, within IAI47_19285 at 84.846 kb on - strand, within IAI47_19285 at 84.846 kb on - strand, within IAI47_19285 at 84.848 kb on + strand, within IAI47_19285 at 84.848 kb on + strand, within IAI47_19285 at 84.848 kb on + strand, within IAI47_19285 at 84.848 kb on + strand, within IAI47_19285 at 84.849 kb on - strand, within IAI47_19285 at 84.849 kb on - strand, within IAI47_19285 at 84.849 kb on - strand, within IAI47_19285 at 84.973 kb on + strand, within IAI47_19285 at 84.988 kb on + strand, within IAI47_19285 at 84.989 kb on - strand, within IAI47_19285 at 85.027 kb on + strand, within IAI47_19285 at 85.028 kb on - strand, within IAI47_19285 at 85.028 kb on - strand, within IAI47_19285 at 85.065 kb on + strand, within IAI47_19285 at 85.066 kb on - strand, within IAI47_19285 at 85.066 kb on - strand, within IAI47_19285 at 85.075 kb on + strand at 85.075 kb on + strand at 85.075 kb on + strand at 85.075 kb on + strand at 85.076 kb on - strand at 85.076 kb on - strand at 85.076 kb on - strand at 85.076 kb on - strand at 85.076 kb on - strand at 85.076 kb on - strand at 85.076 kb on - strand at 85.079 kb on + strand at 85.079 kb on + strand at 85.079 kb on + strand at 85.079 kb on + strand at 85.079 kb on + strand at 85.079 kb on + strand at 85.079 kb on + strand at 85.079 kb on + strand at 85.079 kb on + strand at 85.079 kb on + strand at 85.079 kb on + strand at 85.079 kb on + strand at 85.080 kb on - strand at 85.080 kb on - strand at 85.080 kb on - strand at 85.080 kb on - strand at 85.080 kb on - strand at 85.080 kb on - strand at 85.080 kb on - strand at 85.080 kb on - strand at 85.080 kb on - strand at 85.080 kb on - strand at 85.080 kb on - strand at 85.080 kb on - strand at 85.080 kb on - strand at 85.080 kb on - strand at 85.080 kb on - strand at 85.080 kb on - strand at 85.080 kb on - strand at 85.107 kb on + strand at 85.107 kb on + strand at 85.107 kb on + strand at 85.137 kb on + strand at 85.137 kb on + strand at 85.174 kb on - strand, within IAI47_19290 at 85.189 kb on + strand, within IAI47_19290 at 85.189 kb on + strand, within IAI47_19290 at 85.189 kb on + strand, within IAI47_19290 at 85.190 kb on - strand, within IAI47_19290 at 85.190 kb on - strand, within IAI47_19290 at 85.190 kb on - strand, within IAI47_19290 at 85.190 kb on - strand, within IAI47_19290 at 85.190 kb on - strand, within IAI47_19290 at 85.211 kb on - strand, within IAI47_19290 at 85.211 kb on - strand, within IAI47_19290 at 85.215 kb on + strand, within IAI47_19290 at 85.215 kb on + strand, within IAI47_19290 at 85.215 kb on + strand, within IAI47_19290 at 85.215 kb on + strand, within IAI47_19290 at 85.215 kb on + strand, within IAI47_19290 at 85.215 kb on + strand, within IAI47_19290 at 85.215 kb on + strand, within IAI47_19290 at 85.216 kb on - strand, within IAI47_19290 at 85.216 kb on - strand, within IAI47_19290 at 85.216 kb on - strand, within IAI47_19290 at 85.216 kb on - strand, within IAI47_19290 at 85.218 kb on - strand, within IAI47_19290 at 85.230 kb on + strand, within IAI47_19290 at 85.293 kb on + strand, within IAI47_19290 at 85.293 kb on + strand, within IAI47_19290 at 85.293 kb on + strand, within IAI47_19290 at 85.304 kb on - strand, within IAI47_19290 at 85.392 kb on + strand, within IAI47_19290 at 85.392 kb on + strand, within IAI47_19290 at 85.393 kb on - strand, within IAI47_19290 at 85.424 kb on + strand at 85.424 kb on + strand at 85.424 kb on + strand at 85.424 kb on + strand at 85.425 kb on - strand at 85.425 kb on - strand at 85.427 kb on + strand at 85.427 kb on + strand at 85.427 kb on + strand at 85.427 kb on + strand at 85.428 kb on - strand at 85.428 kb on - strand at 85.431 kb on - strand at 85.485 kb on + strand at 85.485 kb on + strand at 85.485 kb on + strand at 85.486 kb on - strand at 85.486 kb on - strand at 85.486 kb on - strand at 85.490 kb on + strand at 85.576 kb on + strand, within IAI47_19295 at 85.577 kb on - strand, within IAI47_19295 at 85.577 kb on - strand, within IAI47_19295 at 85.589 kb on + strand, within IAI47_19295 at 85.639 kb on + strand, within IAI47_19295 at 85.639 kb on + strand, within IAI47_19295 at 85.678 kb on + strand at 85.680 kb on + strand at 85.681 kb on - strand at 85.687 kb on - strand at 85.690 kb on - strand at 85.696 kb on + strand at 85.696 kb on + strand at 85.696 kb on + strand at 85.696 kb on + strand at 85.696 kb on + strand at 85.697 kb on - strand at 85.710 kb on + strand at 85.751 kb on + strand, within IAI47_19300 at 85.751 kb on + strand, within IAI47_19300 at 85.751 kb on + strand, within IAI47_19300 at 85.751 kb on + strand, within IAI47_19300 at 85.751 kb on + strand, within IAI47_19300 at 85.752 kb on - strand, within IAI47_19300 at 85.752 kb on - strand, within IAI47_19300 at 85.752 kb on - strand, within IAI47_19300 at 85.821 kb on + strand, within IAI47_19300 at 85.821 kb on + strand, within IAI47_19300 at 85.821 kb on + strand, within IAI47_19300 at 85.821 kb on + strand, within IAI47_19300 at 85.821 kb on + strand, within IAI47_19300 at 85.822 kb on - strand, within IAI47_19300 at 85.822 kb on - strand, within IAI47_19300 at 85.822 kb on - strand, within IAI47_19300 at 85.824 kb on - strand, within IAI47_19300 at 85.845 kb on - strand, within IAI47_19300 at 85.845 kb on - strand, within IAI47_19300 at 85.845 kb on - strand, within IAI47_19300 at 85.879 kb on - strand, within IAI47_19300 at 85.935 kb on + strand, within IAI47_19300 at 85.935 kb on + strand, within IAI47_19300 at 85.935 kb on + strand, within IAI47_19300 at 85.935 kb on + strand, within IAI47_19300 at 85.935 kb on + strand, within IAI47_19300 at 85.935 kb on + strand, within IAI47_19300 at 85.935 kb on + strand, within IAI47_19300 at 85.935 kb on + strand, within IAI47_19300 at 85.935 kb on + strand, within IAI47_19300 at 85.935 kb on + strand, within IAI47_19300 at 85.936 kb on - strand, within IAI47_19300 at 85.936 kb on - strand, within IAI47_19300 at 85.936 kb on - strand, within IAI47_19300 at 85.936 kb on - strand, within IAI47_19300 at 85.936 kb on - strand, within IAI47_19300 at 85.936 kb on - strand, within IAI47_19300 at 85.936 kb on - strand, within IAI47_19300 at 85.936 kb on - strand, within IAI47_19300 at 85.936 kb on - strand, within IAI47_19300 at 85.936 kb on - strand, within IAI47_19300 at 85.937 kb on + strand, within IAI47_19300 at 85.937 kb on + strand, within IAI47_19300 at 85.937 kb on + strand, within IAI47_19300 at 85.937 kb on + strand, within IAI47_19300 at 85.937 kb on + strand, within IAI47_19300 at 85.938 kb on - strand, within IAI47_19300 at 85.938 kb on - strand, within IAI47_19300 at 85.938 kb on - strand, within IAI47_19300 at 85.938 kb on - strand, within IAI47_19300 at 85.938 kb on - strand, within IAI47_19300 at 85.938 kb on - strand, within IAI47_19300 at 85.938 kb on - strand, within IAI47_19300 at 85.938 kb on - strand, within IAI47_19300 at 85.938 kb on - strand, within IAI47_19300 at 85.938 kb on - strand, within IAI47_19300 at 85.938 kb on - strand, within IAI47_19300 at 85.938 kb on - strand, within IAI47_19300 at 86.006 kb on + strand, within IAI47_19300 at 86.006 kb on + strand, within IAI47_19300 at 86.007 kb on - strand, within IAI47_19300 at 86.007 kb on - strand, within IAI47_19300 at 86.007 kb on - strand, within IAI47_19300 at 86.033 kb on + strand, within IAI47_19300 at 86.034 kb on - strand, within IAI47_19300 at 86.084 kb on + strand, within IAI47_19300 at 86.084 kb on + strand, within IAI47_19300 at 86.084 kb on + strand, within IAI47_19300 at 86.084 kb on + strand, within IAI47_19300 at 86.085 kb on - strand, within IAI47_19300 at 86.085 kb on - strand, within IAI47_19300 at 86.090 kb on + strand, within IAI47_19300 at 86.090 kb on + strand, within IAI47_19300 at 86.091 kb on - strand, within IAI47_19300 at 86.091 kb on - strand, within IAI47_19300 at 86.091 kb on - strand, within IAI47_19300 at 86.091 kb on - strand, within IAI47_19300 at 86.113 kb on - strand, within IAI47_19300 at 86.125 kb on + strand, within IAI47_19300 at 86.133 kb on + strand, within IAI47_19300 at 86.134 kb on - strand, within IAI47_19300 at 86.134 kb on - strand, within IAI47_19300 at 86.134 kb on - strand, within IAI47_19300 at 86.180 kb on + strand at 86.180 kb on + strand at 86.180 kb on + strand at 86.180 kb on + strand at 86.180 kb on + strand at 86.180 kb on + strand at 86.181 kb on - strand at 86.181 kb on - strand at 86.181 kb on - strand at 86.181 kb on - strand at 86.181 kb on - strand at 86.183 kb on - strand at 86.183 kb on - strand at 86.183 kb on - strand at 86.183 kb on - strand at 86.183 kb on - strand at 86.199 kb on - strand at 86.210 kb on + strand at 86.211 kb on - strand at 86.215 kb on + strand at 86.215 kb on + strand at 86.216 kb on - strand at 86.219 kb on + strand at 86.219 kb on + strand at 86.220 kb on - strand at 86.220 kb on - strand at 86.220 kb on - strand at 86.220 kb on - strand at 86.229 kb on + strand at 86.230 kb on - strand at 86.236 kb on - strand at 86.247 kb on - strand at 86.285 kb on - strand at 86.388 kb on + strand, within IAI47_19305 at 86.389 kb on - strand, within IAI47_19305 at 86.422 kb on + strand, within IAI47_19305 at 86.423 kb on - strand, within IAI47_19305 at 86.458 kb on + strand, within IAI47_19305 at 86.458 kb on + strand, within IAI47_19305 at 86.459 kb on - strand, within IAI47_19305 at 86.459 kb on - strand, within IAI47_19305 at 86.493 kb on + strand, within IAI47_19305 at 86.493 kb on + strand, within IAI47_19305 at 86.511 kb on + strand, within IAI47_19305 at 86.511 kb on + strand, within IAI47_19305 at 86.512 kb on - strand, within IAI47_19305 at 86.512 kb on - strand, within IAI47_19305 at 86.547 kb on + strand, within IAI47_19305 at 86.560 kb on + strand, within IAI47_19305 at 86.560 kb on + strand, within IAI47_19305 at 86.560 kb on + strand, within IAI47_19305 at 86.560 kb on + strand, within IAI47_19305 at 86.560 kb on + strand, within IAI47_19305 at 86.615 kb on + strand, within IAI47_19305 at 86.643 kb on + strand, within IAI47_19305 at 86.643 kb on + strand, within IAI47_19305 at 86.643 kb on + strand, within IAI47_19305
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 84,612 + IAI47_19285 0.26 +1.0 84,612 + IAI47_19285 0.26 +1.4 84,612 + IAI47_19285 0.26 +0.9 84,612 + IAI47_19285 0.26 +0.3 84,612 + IAI47_19285 0.26 -0.1 84,612 + IAI47_19285 0.26 -1.1 84,612 + IAI47_19285 0.26 -0.1 84,612 + IAI47_19285 0.26 +1.7 84,613 - IAI47_19285 0.26 +0.4 84,613 - IAI47_19285 0.26 -1.1 84,613 - IAI47_19285 0.26 +1.1 84,613 - IAI47_19285 0.26 -0.1 84,613 - IAI47_19285 0.26 +0.1 84,613 - IAI47_19285 0.26 +0.6 84,613 - IAI47_19285 0.26 -0.0 84,649 + IAI47_19285 0.31 -1.0 84,650 - IAI47_19285 0.31 -0.2 84,671 - IAI47_19285 0.34 +0.5 84,687 + IAI47_19285 0.36 +3.4 84,687 + IAI47_19285 0.36 -0.3 84,688 - IAI47_19285 0.36 -0.4 84,688 - IAI47_19285 0.36 +0.1 84,688 - IAI47_19285 0.36 -1.1 84,688 - IAI47_19285 0.36 -0.4 84,710 + IAI47_19285 0.39 +1.3 84,710 + IAI47_19285 0.39 -0.6 84,710 + IAI47_19285 0.39 -0.4 84,711 - IAI47_19285 0.39 +0.4 84,711 - IAI47_19285 0.39 +0.5 84,711 - IAI47_19285 0.39 -1.3 84,711 - IAI47_19285 0.39 -1.1 84,711 - IAI47_19285 0.39 +0.5 84,711 - IAI47_19285 0.39 +0.6 84,711 - IAI47_19285 0.39 +1.0 84,712 + IAI47_19285 0.40 +1.3 84,713 - IAI47_19285 0.40 -0.4 84,713 - IAI47_19285 0.40 +0.7 84,713 - IAI47_19285 0.40 +1.5 84,713 - IAI47_19285 0.40 -1.4 84,713 - IAI47_19285 0.40 +0.1 84,738 + IAI47_19285 0.43 +0.5 84,741 + IAI47_19285 0.44 -0.9 84,741 + IAI47_19285 0.44 +1.5 84,742 - IAI47_19285 0.44 -1.8 84,757 + IAI47_19285 0.46 -0.1 84,785 + IAI47_19285 0.50 +0.3 84,785 + IAI47_19285 0.50 -0.2 84,785 + IAI47_19285 0.50 +1.1 84,786 - IAI47_19285 0.50 +0.3 84,786 - IAI47_19285 0.50 -0.0 84,835 + IAI47_19285 0.57 +1.0 84,835 + IAI47_19285 0.57 -0.9 84,836 - IAI47_19285 0.57 +2.5 84,845 + IAI47_19285 0.58 +1.0 84,845 + IAI47_19285 0.58 -1.3 84,845 + IAI47_19285 0.58 -0.9 84,845 + IAI47_19285 0.58 -0.0 84,845 + IAI47_19285 0.58 +0.1 84,845 + IAI47_19285 0.58 -0.5 84,845 + IAI47_19285 0.58 -2.0 84,845 + IAI47_19285 0.58 +1.1 84,845 + IAI47_19285 0.58 -0.9 84,845 + IAI47_19285 0.58 -1.0 84,845 + IAI47_19285 0.58 +1.9 84,846 - IAI47_19285 0.58 -0.5 84,846 - IAI47_19285 0.58 -1.5 84,846 - IAI47_19285 0.58 -0.7 84,846 - IAI47_19285 0.58 +2.9 84,846 - IAI47_19285 0.58 -0.1 84,846 - IAI47_19285 0.58 +0.1 84,846 - IAI47_19285 0.58 -0.0 84,846 - IAI47_19285 0.58 -1.1 84,846 - IAI47_19285 0.58 -0.7 84,846 - IAI47_19285 0.58 -1.3 84,848 + IAI47_19285 0.59 +0.6 84,848 + IAI47_19285 0.59 -1.0 84,848 + IAI47_19285 0.59 +1.7 84,848 + IAI47_19285 0.59 +1.2 84,849 - IAI47_19285 0.59 +0.1 84,849 - IAI47_19285 0.59 +0.8 84,849 - IAI47_19285 0.59 +1.3 84,973 + IAI47_19285 0.76 +2.5 84,988 + IAI47_19285 0.78 +2.9 84,989 - IAI47_19285 0.78 +0.7 85,027 + IAI47_19285 0.84 -0.0 85,028 - IAI47_19285 0.84 -0.4 85,028 - IAI47_19285 0.84 +0.5 85,065 + IAI47_19285 0.89 +0.4 85,066 - IAI47_19285 0.89 +0.4 85,066 - IAI47_19285 0.89 -0.2 85,075 + -1.2 85,075 + +1.8 85,075 + +0.5 85,075 + -0.5 85,076 - +1.2 85,076 - +1.0 85,076 - +0.1 85,076 - +1.3 85,076 - +1.3 85,076 - -0.0 85,076 - +2.3 85,079 + -1.5 85,079 + +1.5 85,079 + -0.3 85,079 + -0.5 85,079 + -0.4 85,079 + -0.7 85,079 + -0.3 85,079 + -0.7 85,079 + -1.4 85,079 + +1.3 85,079 + -0.0 85,079 + +0.5 85,080 - +0.4 85,080 - -0.9 85,080 - +1.0 85,080 - -0.5 85,080 - +2.0 85,080 - -0.1 85,080 - -1.8 85,080 - +0.3 85,080 - +1.4 85,080 - +0.2 85,080 - +0.0 85,080 - -1.6 85,080 - -0.5 85,080 - -1.3 85,080 - -1.3 85,080 - +0.3 85,080 - -0.5 85,107 + +1.3 85,107 + -0.8 85,107 + -0.5 85,137 + +1.1 85,137 + -0.3 85,174 - IAI47_19290 0.11 -1.7 85,189 + IAI47_19290 0.16 -0.7 85,189 + IAI47_19290 0.16 +2.4 85,189 + IAI47_19290 0.16 -0.9 85,190 - IAI47_19290 0.16 +0.2 85,190 - IAI47_19290 0.16 -0.1 85,190 - IAI47_19290 0.16 +1.2 85,190 - IAI47_19290 0.16 +1.8 85,190 - IAI47_19290 0.16 -0.2 85,211 - IAI47_19290 0.24 +0.3 85,211 - IAI47_19290 0.24 +1.2 85,215 + IAI47_19290 0.25 -0.4 85,215 + IAI47_19290 0.25 -0.3 85,215 + IAI47_19290 0.25 +1.1 85,215 + IAI47_19290 0.25 -0.7 85,215 + IAI47_19290 0.25 -0.5 85,215 + IAI47_19290 0.25 -2.5 85,215 + IAI47_19290 0.25 -0.7 85,216 - IAI47_19290 0.25 -1.4 85,216 - IAI47_19290 0.25 +0.6 85,216 - IAI47_19290 0.25 -0.8 85,216 - IAI47_19290 0.25 +0.5 85,218 - IAI47_19290 0.26 +4.6 85,230 + IAI47_19290 0.30 +0.8 85,293 + IAI47_19290 0.51 -0.7 85,293 + IAI47_19290 0.51 +3.0 85,293 + IAI47_19290 0.51 +0.4 85,304 - 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Or see this region's nucleotide sequence