Strain Fitness in Pantoea sp. MT58 around IAI47_18390

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,912,736	-		IAI47_18385	0.28	+0.3
3,912,810	+		IAI47_18385	0.35	+1.2
3,912,810	+		IAI47_18385	0.35	-1.5
3,912,810	+		IAI47_18385	0.35	-1.1
3,912,811	-		IAI47_18385	0.36	-0.3
3,912,873	+		IAI47_18385	0.42	+0.0
3,912,874	-		IAI47_18385	0.42	+1.1
3,912,911	+		IAI47_18385	0.46	-1.8
3,912,911	+		IAI47_18385	0.46	-1.3
3,912,911	+		IAI47_18385	0.46	+1.2
3,912,911	+		IAI47_18385	0.46	-0.8
3,912,912	-		IAI47_18385	0.46	-0.8
3,912,912	-		IAI47_18385	0.46	-0.1
3,912,912	-		IAI47_18385	0.46	+0.3
3,912,968	+		IAI47_18385	0.52	-1.2
3,912,968	+		IAI47_18385	0.52	+0.4
3,912,968	+		IAI47_18385	0.52	+0.9
3,912,968	+		IAI47_18385	0.52	-0.3
3,912,968	+		IAI47_18385	0.52	-0.8
3,912,968	+		IAI47_18385	0.52	-0.5
3,912,968	+		IAI47_18385	0.52	-1.8
3,912,968	+		IAI47_18385	0.52	-1.4
3,912,968	+		IAI47_18385	0.52	+0.0
3,912,969	-		IAI47_18385	0.52	-1.2
3,912,969	-		IAI47_18385	0.52	-0.1
3,912,969	-		IAI47_18385	0.52	+0.2
3,912,969	-		IAI47_18385	0.52	-0.2
3,913,074	+		IAI47_18385	0.63	+0.1
3,913,075	-		IAI47_18385	0.63	-0.3
3,913,075	-		IAI47_18385	0.63	+0.7
3,913,075	-		IAI47_18385	0.63	+0.6
3,913,079	+		IAI47_18385	0.64	+0.8
3,913,079	+		IAI47_18385	0.64	-0.7
3,913,080	-		IAI47_18385	0.64	+2.2
3,913,080	-		IAI47_18385	0.64	-0.0
3,913,116	+		IAI47_18385	0.68	+0.7
3,913,116	+		IAI47_18385	0.68	+1.2
3,913,116	+		IAI47_18385	0.68	-0.9
3,913,116	+		IAI47_18385	0.68	+2.0
3,913,116	+		IAI47_18385	0.68	+1.2
3,913,116	+		IAI47_18385	0.68	-2.7
3,913,116	+		IAI47_18385	0.68	+0.6
3,913,116	+		IAI47_18385	0.68	+1.5
3,913,116	+		IAI47_18385	0.68	+1.3
3,913,116	+		IAI47_18385	0.68	+0.7
3,913,116	+		IAI47_18385	0.68	-2.1
3,913,116	+		IAI47_18385	0.68	+0.1
3,913,116	+		IAI47_18385	0.68	-1.9
3,913,117	-		IAI47_18385	0.68	-2.0
3,913,117	-		IAI47_18385	0.68	+1.1
3,913,117	-		IAI47_18385	0.68	-0.1
3,913,118	+		IAI47_18385	0.68	-0.4
3,913,118	+		IAI47_18385	0.68	+0.0
3,913,152	+		IAI47_18385	0.71	-1.3
3,913,152	+		IAI47_18385	0.71	-0.5
3,913,152	+		IAI47_18385	0.71	+0.2
3,913,152	+		IAI47_18385	0.71	+0.8
3,913,152	+		IAI47_18385	0.71	-0.4
3,913,153	-		IAI47_18385	0.71	+0.0
3,913,153	-		IAI47_18385	0.71	+1.7
3,913,153	-		IAI47_18385	0.71	-1.0
3,913,153	-		IAI47_18385	0.71	-1.3
3,913,153	-		IAI47_18385	0.71	-1.2
3,913,153	-		IAI47_18385	0.71	-0.3
3,913,153	-		IAI47_18385	0.71	-1.2
3,913,158	+		IAI47_18385	0.72	-1.4
3,913,158	+		IAI47_18385	0.72	-1.3
3,913,158	+		IAI47_18385	0.72	-0.2
3,913,180	+		IAI47_18385	0.74	+0.7
3,913,184	+		IAI47_18385	0.75	-0.1
3,913,184	+		IAI47_18385	0.75	-1.6
3,913,184	+		IAI47_18385	0.75	+2.3
3,913,185	-		IAI47_18385	0.75	+0.8
3,913,203	+		IAI47_18385	0.77	+1.2
3,913,203	+		IAI47_18385	0.77	-1.0
3,913,203	+		IAI47_18385	0.77	+0.6
3,913,203	+		IAI47_18385	0.77	-1.4
3,913,203	+		IAI47_18385	0.77	-0.8
3,913,203	+		IAI47_18385	0.77	-1.7
3,913,203	+		IAI47_18385	0.77	-0.7
3,913,204	-		IAI47_18385	0.77	-1.4
3,913,204	-		IAI47_18385	0.77	-1.5
3,913,204	-		IAI47_18385	0.77	+2.2
3,913,204	-		IAI47_18385	0.77	-0.6
3,913,329	+		IAI47_18385	0.90	+0.5
3,913,330	-				-1.2
3,913,330	-				-1.6
3,913,330	-				-1.5
3,913,411	-				-1.0
3,913,425	+				-0.6
3,913,426	-				-1.2
3,913,431	+				+0.1
3,913,431	+				+0.9
3,913,431	+				-0.1
3,913,431	+				+0.9
3,913,431	+				+0.7
3,913,431	+				+1.3
3,913,432	-				-2.3
3,913,432	-				-0.8
3,913,432	-				+0.6
3,913,432	-				+0.2
3,913,432	-				+2.2
3,913,432	-				-1.0
3,913,432	-				+0.1
3,913,448	+				-1.5
3,913,448	+				+1.6
3,913,449	-				+0.1
3,913,449	-				-2.4
3,913,449	-				+1.6
3,913,522	+				-1.5
3,913,523	-				-2.2
3,913,523	-				+1.3
3,913,577	+				-1.6
3,913,592	-				+1.6
3,913,597	+				-0.2
3,913,599	+				-1.6
3,913,599	+				-1.6
3,913,599	+				-1.2
3,913,599	+				-0.7
3,913,600	-				+1.0
3,913,600	-				+0.7
3,913,600	-				-0.3
3,913,600	-				-1.4
3,913,605	+				-0.4
3,913,605	+				-0.5
3,913,605	+				+0.2
3,913,605	+				+0.5
3,913,605	+				+0.3
3,913,605	+				-1.3
3,913,605	+				-1.5
3,913,605	+				-2.0
3,913,605	+				+0.6
3,913,605	+				-1.3
3,913,605	+				-2.4
3,913,605	+				-1.8
3,913,606	-				-0.2
3,913,606	-				-0.3
3,913,606	-				-1.9
3,913,606	-				+0.3
3,913,606	-				-0.6
3,913,606	-				+1.1
3,913,606	-				+1.5
3,913,606	-				+0.4
3,913,606	-				+0.7
3,913,612	+				-0.5
3,913,612	+				-0.6
3,913,612	+				+2.0
3,913,612	+				+0.2
3,913,613	-				+0.7
3,913,613	-				-1.2
3,913,613	-				-1.4
3,913,613	-				+1.5
3,913,621	+				-0.2
3,913,679	+				+0.7
3,913,679	+				+0.2
3,913,679	+				+0.2
3,913,679	+				-1.3
3,913,679	+				-1.5
3,913,680	-				-0.0
3,913,680	-				-0.1
3,913,680	-				-0.2
3,913,680	-				+1.3
3,913,680	-				+0.2
3,913,680	-				+0.6
3,913,682	+				+0.2
3,913,683	-				-0.3
3,913,697	-				+0.2
3,913,697	-				+0.4
3,913,729	+				-2.0
3,913,729	+				+1.4
3,913,730	-				-0.8
3,913,730	-				-0.4
3,913,730	-				-1.1
3,913,750	+				-0.8
3,913,750	+				-0.2
3,913,750	+				+0.9
3,913,750	+				+1.3
3,913,751	-				+0.7
3,914,014	+		IAI47_18390	0.13	-1.3
3,914,015	-		IAI47_18390	0.13	-0.6
3,914,015	-		IAI47_18390	0.13	+1.5
3,914,024	+		IAI47_18390	0.14	+1.1
3,914,024	+		IAI47_18390	0.14	-1.2
3,914,024	+		IAI47_18390	0.14	+0.2
3,914,024	+		IAI47_18390	0.14	+0.8
3,914,024	+		IAI47_18390	0.14	-0.8
3,914,025	-		IAI47_18390	0.14	-1.4
3,914,025	-		IAI47_18390	0.14	-1.0
3,914,025	-		IAI47_18390	0.14	+0.1
3,914,029	+		IAI47_18390	0.14	-1.6
3,914,029	+		IAI47_18390	0.14	-1.5
3,914,029	+		IAI47_18390	0.14	-0.2
3,914,030	-		IAI47_18390	0.14	-1.6
3,914,030	-		IAI47_18390	0.14	+0.1
3,914,051	-		IAI47_18390	0.15	-1.2
3,914,051	-		IAI47_18390	0.15	-0.7
3,914,051	-		IAI47_18390	0.15	+0.3
3,914,082	+		IAI47_18390	0.16	+0.9
3,914,092	+		IAI47_18390	0.17	-1.5
3,914,093	-		IAI47_18390	0.17	-0.4
3,914,093	-		IAI47_18390	0.17	+1.8
3,914,093	-		IAI47_18390	0.17	+0.4
3,914,093	-		IAI47_18390	0.17	+0.5
3,914,093	-		IAI47_18390	0.17	-0.3
3,914,190	-		IAI47_18390	0.21	-1.4
3,914,329	+		IAI47_18390	0.28	-0.8
3,914,410	+		IAI47_18390	0.32	+0.1
3,914,410	+		IAI47_18390	0.32	-0.8
3,914,410	+		IAI47_18390	0.32	-0.6
3,914,410	+		IAI47_18390	0.32	+0.5
3,914,410	+		IAI47_18390	0.32	-0.8
3,914,411	-		IAI47_18390	0.32	+0.3
3,914,411	-		IAI47_18390	0.32	-0.2
3,914,411	-		IAI47_18390	0.32	+2.7
3,914,411	-		IAI47_18390	0.32	-1.0
3,914,436	-		IAI47_18390	0.33	-0.9
3,914,655	-		IAI47_18390	0.43	+0.3
3,914,658	+		IAI47_18390	0.43	-2.3
3,914,711	-		IAI47_18390	0.45	+1.5
3,914,761	+		IAI47_18390	0.48	-1.2
3,914,761	+		IAI47_18390	0.48	-0.7
3,914,761	+		IAI47_18390	0.48	-1.6
3,914,761	+		IAI47_18390	0.48	-0.8
3,914,762	-		IAI47_18390	0.48	+0.6
3,914,762	-		IAI47_18390	0.48	+0.5
3,914,765	+		IAI47_18390	0.48	-0.8
3,914,765	+		IAI47_18390	0.48	-0.8
3,914,765	+		IAI47_18390	0.48	-0.2
3,914,765	+		IAI47_18390	0.48	+0.9
3,914,765	+		IAI47_18390	0.48	-0.6
3,914,765	+		IAI47_18390	0.48	+1.3
3,914,766	-		IAI47_18390	0.48	-0.5
3,914,766	-		IAI47_18390	0.48	-1.1
3,914,766	-		IAI47_18390	0.48	-0.1
3,914,766	-		IAI47_18390	0.48	+2.2
3,914,766	-		IAI47_18390	0.48	+0.4
3,914,766	-		IAI47_18390	0.48	+1.0
3,914,766	-		IAI47_18390	0.48	-0.9
3,914,766	-		IAI47_18390	0.48	-0.2
3,914,830	+		IAI47_18390	0.51	-1.0
3,914,831	-		IAI47_18390	0.51	-2.1
3,914,918	+		IAI47_18390	0.55	+0.5
3,914,919	-		IAI47_18390	0.55	-2.5
3,914,919	-		IAI47_18390	0.55	-1.6
3,914,929	+		IAI47_18390	0.56	+0.6
3,914,929	+		IAI47_18390	0.56	-2.4
3,914,929	+		IAI47_18390	0.56	-3.3
3,914,929	+		IAI47_18390	0.56	+0.6
3,914,929	+		IAI47_18390	0.56	-0.2
3,914,929	+		IAI47_18390	0.56	-0.0
3,914,929	+		IAI47_18390	0.56	-1.0
3,914,930	-		IAI47_18390	0.56	+0.7
3,914,930	-		IAI47_18390	0.56	-1.4
3,914,930	-		IAI47_18390	0.56	-1.5
3,914,930	-		IAI47_18390	0.56	-0.1
3,914,930	-		IAI47_18390	0.56	-0.9
3,914,930	-		IAI47_18390	0.56	+0.7
3,914,933	+		IAI47_18390	0.56	-2.0
3,914,933	+		IAI47_18390	0.56	-0.9
3,914,934	-		IAI47_18390	0.56	-1.0
3,914,934	-		IAI47_18390	0.56	-1.0
3,914,976	-		IAI47_18390	0.58	-1.2
3,915,029	+		IAI47_18390	0.60	-0.5
3,915,030	-		IAI47_18390	0.60	+0.8
3,915,044	-		IAI47_18390	0.61	+0.0
3,915,044	-		IAI47_18390	0.61	-0.8
3,915,044	-		IAI47_18390	0.61	+0.3
3,915,044	-		IAI47_18390	0.61	-1.2
3,915,102	-		IAI47_18390	0.64	-0.1
3,915,102	-		IAI47_18390	0.64	-1.3
3,915,102	-		IAI47_18390	0.64	-0.7
3,915,130	+		IAI47_18390	0.65	+0.7
3,915,130	+		IAI47_18390	0.65	+0.4
3,915,131	-		IAI47_18390	0.65	+0.2
3,915,131	-		IAI47_18390	0.65	+1.7
3,915,202	+		IAI47_18390	0.68	-2.3
3,915,203	-		IAI47_18390	0.68	+0.5
3,915,203	-		IAI47_18390	0.68	+0.2
3,915,203	-		IAI47_18390	0.68	-1.2
3,915,219	-		IAI47_18390	0.69	+0.8
3,915,249	-		IAI47_18390	0.70	+0.6
3,915,249	-		IAI47_18390	0.70	+1.5
3,915,249	-		IAI47_18390	0.70	-1.5
3,915,269	+		IAI47_18390	0.71	+0.1
3,915,269	+		IAI47_18390	0.71	-0.8
3,915,269	+		IAI47_18390	0.71	-0.9
3,915,270	-		IAI47_18390	0.71	-2.0
3,915,270	-		IAI47_18390	0.71	+1.1
3,915,270	-		IAI47_18390	0.71	-2.6
3,915,270	-		IAI47_18390	0.71	+1.7
3,915,270	-		IAI47_18390	0.71	+0.3
3,915,270	-		IAI47_18390	0.71	+1.3
3,915,270	-		IAI47_18390	0.71	+0.8
3,915,270	-		IAI47_18390	0.71	+0.8
3,915,334	-		IAI47_18390	0.74	-1.6
3,915,370	+		IAI47_18390	0.76	-1.7
3,915,371	-		IAI47_18390	0.76	-0.6
3,915,371	-		IAI47_18390	0.76	-2.8
3,915,407	-		IAI47_18390	0.78	+0.3
3,915,407	-		IAI47_18390	0.78	+0.4
3,915,407	-		IAI47_18390	0.78	-1.8
3,915,416	+		IAI47_18390	0.78	-0.7
3,915,416	+		IAI47_18390	0.78	-2.0
3,915,417	-		IAI47_18390	0.78	-1.2
3,915,457	+		IAI47_18390	0.80	+0.5
3,915,457	+		IAI47_18390	0.80	-0.5
3,915,457	+		IAI47_18390	0.80	+0.4
3,915,457	+		IAI47_18390	0.80	-1.1
3,915,457	+		IAI47_18390	0.80	-2.0
3,915,457	+		IAI47_18390	0.80	+1.1
3,915,457	+		IAI47_18390	0.80	-0.2
3,915,457	+		IAI47_18390	0.80	+1.1
3,915,458	-		IAI47_18390	0.80	-1.3
3,915,458	-		IAI47_18390	0.80	-2.4
3,915,458	-		IAI47_18390	0.80	+1.5
3,915,509	+		IAI47_18390	0.82	-1.6
3,915,510	-		IAI47_18390	0.82	+0.4
3,915,510	-		IAI47_18390	0.82	+0.3
3,915,521	+		IAI47_18390	0.83	-0.4
3,915,522	-		IAI47_18390	0.83	-0.5
3,915,600	+		IAI47_18390	0.87	-0.2
3,915,601	-		IAI47_18390	0.87	+0.2
3,915,601	-		IAI47_18390	0.87	-0.8
3,915,672	-		IAI47_18390	0.90	-0.4
3,915,704	+				+1.2
3,915,705	-				-0.5
3,915,728	-				-0.5
3,915,789	-				+1.5
3,915,789	-				+0.9
3,915,789	-				-0.6
3,915,890	+				+2.2
3,915,890	+				-0.1
3,915,890	+				+0.2
3,915,891	-				+1.7
3,915,891	-				-0.5
3,915,934	-				-1.5
3,915,955	+				+0.7
3,915,956	-				+1.9
3,915,956	-				-0.9
3,915,992	+				+0.6
3,915,993	-				-0.8
3,916,037	+				+0.9
3,916,046	+				+1.4
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