Strain Fitness in Pantoea sp. MT58 around IAI47_15030

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,167,941	-		IAI47_15020	0.84	-0.8
3,167,941	-		IAI47_15020	0.84	-1.1
3,167,941	-		IAI47_15020	0.84	-0.6
3,167,941	-		IAI47_15020	0.84	+0.8
3,167,944	+		IAI47_15020	0.84	+1.8
3,167,944	+		IAI47_15020	0.84	+0.5
3,167,944	+		IAI47_15020	0.84	-0.1
3,167,944	+		IAI47_15020	0.84	+1.7
3,167,944	+		IAI47_15020	0.84	+0.5
3,167,945	-		IAI47_15020	0.84	+2.0
3,167,945	-		IAI47_15020	0.84	+0.1
3,167,945	-		IAI47_15020	0.84	+0.5
3,167,945	-		IAI47_15020	0.84	-0.2
3,167,945	-		IAI47_15020	0.84	-1.3
3,167,945	-		IAI47_15020	0.84	+1.2
3,167,945	-		IAI47_15020	0.84	-0.7
3,167,945	-		IAI47_15020	0.84	+0.9
3,168,024	+				-0.2
3,168,024	+				+0.1
3,168,024	+				+0.2
3,168,025	-				+0.8
3,168,047	+				+3.6
3,168,047	+				-0.2
3,168,048	-				-0.2
3,168,065	+				+1.7
3,168,066	-				-0.2
3,168,066	-				-1.3
3,168,066	-				-1.3
3,168,066	-				+0.3
3,168,066	-				-0.2
3,168,090	+				-0.4
3,168,090	+				+0.8
3,168,090	+				-0.6
3,168,091	-				+0.5
3,168,091	-				+0.8
3,168,091	-				+2.8
3,168,110	+				-0.8
3,168,110	+				-0.9
3,168,111	-				-0.2
3,168,129	+				-0.1
3,168,129	+				-0.8
3,168,129	+				+0.3
3,168,130	-				+0.6
3,168,130	-				+0.1
3,168,130	-				+0.8
3,168,130	-				-1.1
3,168,130	-				+2.8
3,168,130	-				+3.7
3,168,150	-				+0.1
3,168,150	-				+0.2
3,168,159	+				-0.5
3,168,159	+				+0.6
3,168,159	+				+0.2
3,168,159	+				-1.4
3,168,159	+				+1.1
3,168,159	+				-0.9
3,168,159	+				+1.2
3,168,159	+				+0.2
3,168,159	+				+0.6
3,168,159	+				-0.2
3,168,159	+				-1.5
3,168,159	+				-1.4
3,168,160	-				+0.6
3,168,160	-				-1.6
3,168,160	-				+0.5
3,168,160	-				-1.6
3,168,160	-				-1.8
3,168,160	-				+0.0
3,168,160	-				-0.3
3,168,160	-				+0.2
3,168,160	-				+1.0
3,168,160	-				+1.2
3,168,352	+		IAI47_15025	0.28	+0.9
3,168,352	+		IAI47_15025	0.28	+1.0
3,168,353	-		IAI47_15025	0.28	-0.7
3,168,353	-		IAI47_15025	0.28	+0.4
3,168,765	+		IAI47_15025	0.81	-0.4
3,168,863	+				+0.3
3,168,863	+				-1.3
3,168,863	+				-0.6
3,168,863	+				-2.5
3,168,863	+				+0.3
3,168,864	-				+0.9
3,168,865	+				+0.7
3,168,865	+				+0.4
3,168,865	+				+0.9
3,168,865	+				-0.2
3,168,865	+				+0.6
3,168,865	+				+0.2
3,168,866	-				-1.1
3,168,866	-				-0.1
3,168,866	-				+0.0
3,168,866	-				+0.8
3,168,866	-				-1.7
3,168,930	+				+0.6
3,168,930	+				-0.6
3,168,930	+				-0.6
3,168,931	-				+0.2
3,168,931	-				-1.7
3,168,931	-				-1.0
3,168,931	-				-0.2
3,168,946	+				-0.3
3,168,946	+				-0.1
3,168,946	+				+1.7
3,168,947	-				+1.0
3,168,947	-				+0.1
3,168,947	-				+0.0
3,168,947	-				+1.1
3,168,961	+				+0.5
3,168,961	+				+0.2
3,168,961	+				+0.9
3,168,961	+				+0.5
3,168,962	-				+0.5
3,168,962	-				-0.7
3,168,992	-				+1.4
3,168,992	-				+0.2
3,169,073	-		IAI47_15030	0.10	-1.0
3,169,093	+		IAI47_15030	0.11	-0.2
3,169,094	-		IAI47_15030	0.11	-0.4
3,169,094	-		IAI47_15030	0.11	-0.0
3,169,094	-		IAI47_15030	0.11	-0.2
3,169,151	+		IAI47_15030	0.15	-0.9
3,169,152	-		IAI47_15030	0.15	-0.8
3,169,180	+		IAI47_15030	0.17	+0.5
3,169,180	+		IAI47_15030	0.17	+1.5
3,169,181	-		IAI47_15030	0.17	+0.9
3,169,181	-		IAI47_15030	0.17	+2.7
3,169,181	-		IAI47_15030	0.17	-0.3
3,169,181	-		IAI47_15030	0.17	-0.8
3,169,181	-		IAI47_15030	0.17	+0.4
3,169,234	+		IAI47_15030	0.20	-1.4
3,169,234	+		IAI47_15030	0.20	+0.2
3,169,235	-		IAI47_15030	0.20	+3.0
3,169,235	-		IAI47_15030	0.20	-2.0
3,169,249	+		IAI47_15030	0.21	-1.5
3,169,249	+		IAI47_15030	0.21	+0.4
3,169,250	-		IAI47_15030	0.21	+1.2
3,169,250	-		IAI47_15030	0.21	-0.3
3,169,290	+		IAI47_15030	0.23	-0.1
3,169,290	+		IAI47_15030	0.23	+0.3
3,169,290	+		IAI47_15030	0.23	-0.6
3,169,291	-		IAI47_15030	0.23	-1.7
3,169,291	-		IAI47_15030	0.23	+0.4
3,169,291	-		IAI47_15030	0.23	+0.7
3,169,291	-		IAI47_15030	0.23	-0.9
3,169,301	-		IAI47_15030	0.24	-0.1
3,169,332	+		IAI47_15030	0.26	+0.0
3,169,333	-		IAI47_15030	0.26	+2.2
3,169,333	-		IAI47_15030	0.26	+0.6
3,169,333	-		IAI47_15030	0.26	-0.3
3,169,411	+		IAI47_15030	0.31	+1.3
3,169,411	+		IAI47_15030	0.31	-1.3
3,169,412	-		IAI47_15030	0.31	-0.5
3,169,412	-		IAI47_15030	0.31	-0.4
3,169,412	-		IAI47_15030	0.31	-0.3
3,169,431	-		IAI47_15030	0.32	+1.1
3,169,468	+		IAI47_15030	0.34	-0.5
3,169,468	+		IAI47_15030	0.34	-0.2
3,169,470	+		IAI47_15030	0.34	+1.2
3,169,471	-		IAI47_15030	0.34	-1.2
3,169,471	-		IAI47_15030	0.34	+0.9
3,169,471	-		IAI47_15030	0.34	+1.4
3,169,471	-		IAI47_15030	0.34	-0.9
3,169,471	-		IAI47_15030	0.34	-1.0
3,169,566	+		IAI47_15030	0.40	+0.1
3,169,566	+		IAI47_15030	0.40	-1.5
3,169,567	-		IAI47_15030	0.40	-0.6
3,169,567	-		IAI47_15030	0.40	+0.8
3,169,567	-		IAI47_15030	0.40	+0.3
3,169,567	-		IAI47_15030	0.40	+0.5
3,169,567	-		IAI47_15030	0.40	-2.0
3,169,567	-		IAI47_15030	0.40	-1.1
3,169,567	-		IAI47_15030	0.40	+0.1
3,169,597	+		IAI47_15030	0.42	+0.3
3,169,598	-		IAI47_15030	0.42	+0.4
3,169,633	+		IAI47_15030	0.44	-2.5
3,169,633	+		IAI47_15030	0.44	+1.3
3,169,680	+		IAI47_15030	0.47	+0.8
3,169,680	+		IAI47_15030	0.47	-2.0
3,169,681	-		IAI47_15030	0.47	-0.9
3,169,681	-		IAI47_15030	0.47	+0.8
3,169,741	+		IAI47_15030	0.50	-0.9
3,169,741	+		IAI47_15030	0.50	+3.0
3,169,741	+		IAI47_15030	0.50	-1.1
3,169,741	+		IAI47_15030	0.50	-0.3
3,169,769	+		IAI47_15030	0.52	-1.9
3,169,769	+		IAI47_15030	0.52	+2.3
3,169,804	+		IAI47_15030	0.54	+0.8
3,169,804	+		IAI47_15030	0.54	+2.2
3,169,804	+		IAI47_15030	0.54	-2.9
3,169,804	+		IAI47_15030	0.54	-0.4
3,169,805	-		IAI47_15030	0.54	-0.9
3,169,805	-		IAI47_15030	0.54	-0.2
3,169,805	-		IAI47_15030	0.54	+1.9
3,169,807	+		IAI47_15030	0.54	+1.9
3,169,807	+		IAI47_15030	0.54	+0.8
3,169,808	-		IAI47_15030	0.55	-0.0
3,170,072	+		IAI47_15030	0.70	-0.6
3,170,073	-		IAI47_15030	0.71	-1.4
3,170,098	-		IAI47_15030	0.72	+3.2
3,170,098	-		IAI47_15030	0.72	+0.5
3,170,137	+		IAI47_15030	0.74	-0.0
3,170,138	-		IAI47_15030	0.74	+0.2
3,170,138	-		IAI47_15030	0.74	+1.3
3,170,230	+		IAI47_15030	0.80	+0.2
3,170,242	+		IAI47_15030	0.81	-0.4
3,170,242	+		IAI47_15030	0.81	-0.5
3,170,242	+		IAI47_15030	0.81	-0.5
3,170,242	+		IAI47_15030	0.81	-2.4
3,170,243	-		IAI47_15030	0.81	-0.8
3,170,243	-		IAI47_15030	0.81	+0.7
3,170,255	-		IAI47_15030	0.82	-1.2
3,170,257	+		IAI47_15030	0.82	+0.5
3,170,257	+		IAI47_15030	0.82	-1.5
3,170,289	+		IAI47_15030	0.84	+0.4
3,170,297	+		IAI47_15030	0.84	+1.5
3,170,298	-		IAI47_15030	0.84	+0.2
3,170,311	+		IAI47_15030	0.85	-1.1
3,170,311	+		IAI47_15030	0.85	-2.4
3,170,311	+		IAI47_15030	0.85	-1.5
3,170,311	+		IAI47_15030	0.85	-2.1
3,170,312	-		IAI47_15030	0.85	-0.9
3,170,338	-		IAI47_15030	0.87	+0.6
3,170,425	+				-0.7
3,170,425	+				+0.1
3,170,426	-				+0.9
3,170,426	-				+1.8
3,170,426	-				-1.9
3,170,426	-				+1.1
3,170,426	-				-1.9
3,170,426	-				+0.1
3,170,442	+				+2.9
3,170,442	+				+0.2
3,170,443	-				+0.7
3,170,443	-				+0.8
3,170,461	+				-1.3
3,170,461	+				-1.5
3,170,462	-				-0.7
3,170,462	-				-0.6
3,170,462	-				-0.7
3,170,462	-				-0.3
3,170,521	+				+0.5
3,170,521	+				-2.3
3,170,521	+				+0.2
3,170,521	+				+0.3
3,170,521	+				-1.1
3,170,522	-				+1.2
3,170,522	-				+0.6
3,170,522	-				+1.1
3,170,522	-				-1.4
3,170,524	+				+0.6
3,170,525	-				+1.1
3,170,525	-				+0.5
3,170,538	+				-0.6
3,170,566	+				+1.4
3,170,567	-				+0.6
3,170,596	+				-1.9
3,170,596	+				-0.5
3,170,596	+				+0.1
3,170,596	+				-1.6
3,170,597	-				-0.8
3,170,597	-				-0.8
3,170,648	+				+0.8
3,170,648	+				-0.5
3,170,674	+				+1.1
3,170,674	+				-0.4
3,170,674	+				-0.4
3,170,675	-				+0.3
3,170,680	-				-0.3
3,170,680	-				+0.6
3,170,686	-				+1.2
3,170,698	+				-1.1
3,170,713	+				+0.0
3,170,714	-				-0.4
3,170,772	+				-0.0
3,170,773	-				+0.4
3,170,931	+		IAI47_15035	0.14	-0.7
3,170,931	+		IAI47_15035	0.14	-0.7
3,170,931	+		IAI47_15035	0.14	-1.4
3,170,932	-		IAI47_15035	0.14	-1.9
3,170,932	-		IAI47_15035	0.14	+0.1
3,170,934	+		IAI47_15035	0.14	+0.8
3,170,934	+		IAI47_15035	0.14	+0.8
3,170,935	-		IAI47_15035	0.14	-0.3
3,170,935	-		IAI47_15035	0.14	+1.1
3,170,952	+		IAI47_15035	0.16	+0.7
3,170,952	+		IAI47_15035	0.16	-0.0
3,170,952	+		IAI47_15035	0.16	-0.7
3,170,952	+		IAI47_15035	0.16	+1.1
3,170,985	+		IAI47_15035	0.19	+1.9
3,170,986	-		IAI47_15035	0.19	+1.4
3,170,986	-		IAI47_15035	0.19	+2.0
3,170,986	-		IAI47_15035	0.19	+0.5
3,171,210	+		IAI47_15035	0.38	+0.2
3,171,210	+		IAI47_15035	0.38	-1.4
3,171,210	+		IAI47_15035	0.38	-1.0
3,171,210	+		IAI47_15035	0.38	-0.9
3,171,211	-		IAI47_15035	0.38	+1.0
3,171,257	+		IAI47_15035	0.42	+1.5
3,171,290	+		IAI47_15035	0.45	+0.7
3,171,290	+		IAI47_15035	0.45	+0.2
3,171,290	+		IAI47_15035	0.45	-0.2
3,171,290	+		IAI47_15035	0.45	+0.7
3,171,290	+		IAI47_15035	0.45	+0.5
3,171,291	-		IAI47_15035	0.45	+0.1
3,171,291	-		IAI47_15035	0.45	-1.7
3,171,291	-		IAI47_15035	0.45	+0.0
3,171,402	+		IAI47_15035	0.54	+2.7
3,171,402	+		IAI47_15035	0.54	-0.9
3,171,420	+		IAI47_15035	0.56	-1.1
3,171,421	-		IAI47_15035	0.56	-0.2
3,171,447	+		IAI47_15035	0.58	-3.2
3,171,448	-		IAI47_15035	0.58	-0.2
3,171,448	-		IAI47_15035	0.58	+0.5
3,171,448	-		IAI47_15035	0.58	-2.7