Strain Fitness in Pantoea sp. MT58 around IAI47_14295

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,021,158	+		IAI47_14285	0.87	+0.2
3,021,159	-		IAI47_14285	0.87	+0.3
3,021,173	+		IAI47_14285	0.88	-1.6
3,021,173	+		IAI47_14285	0.88	-1.7
3,021,173	+		IAI47_14285	0.88	-0.6
3,021,173	+		IAI47_14285	0.88	-1.5
3,021,173	+		IAI47_14285	0.88	+2.8
3,021,173	+		IAI47_14285	0.88	-0.2
3,021,173	+		IAI47_14285	0.88	+1.0
3,021,173	+		IAI47_14285	0.88	-1.2
3,021,174	-		IAI47_14285	0.88	+0.3
3,021,174	-		IAI47_14285	0.88	-0.3
3,021,174	-		IAI47_14285	0.88	-1.7
3,021,174	-		IAI47_14285	0.88	+0.7
3,021,174	-		IAI47_14285	0.88	+0.7
3,021,174	-		IAI47_14285	0.88	-0.1
3,021,174	-		IAI47_14285	0.88	-0.5
3,021,174	-		IAI47_14285	0.88	+1.5
3,021,174	-		IAI47_14285	0.88	+0.1
3,021,177	+		IAI47_14285	0.89	-0.3
3,021,177	+		IAI47_14285	0.89	+0.0
3,021,177	+		IAI47_14285	0.89	+0.5
3,021,177	+		IAI47_14285	0.89	-2.1
3,021,177	+		IAI47_14285	0.89	+0.1
3,021,177	+		IAI47_14285	0.89	-1.4
3,021,177	+		IAI47_14285	0.89	-0.9
3,021,177	+		IAI47_14285	0.89	-0.7
3,021,178	-		IAI47_14285	0.89	-0.3
3,021,178	-		IAI47_14285	0.89	-1.5
3,021,178	-		IAI47_14285	0.89	-1.0
3,021,178	-		IAI47_14285	0.89	+0.7
3,021,178	-		IAI47_14285	0.89	-0.8
3,021,269	+				-0.6
3,021,270	-				+0.4
3,021,270	-				+1.5
3,021,279	+				-1.4
3,021,280	-				-0.3
3,021,280	-				+0.8
3,021,293	-				+0.7
3,021,293	-				+0.1
3,021,364	+				-2.7
3,021,364	+				-0.2
3,021,364	+				-0.0
3,021,365	-				-1.0
3,021,430	+		IAI47_14290	0.18	-1.8
3,021,430	+		IAI47_14290	0.18	-2.0
3,021,430	+		IAI47_14290	0.18	+0.2
3,021,431	-		IAI47_14290	0.19	+1.5
3,021,431	-		IAI47_14290	0.19	-0.7
3,021,439	+		IAI47_14290	0.20	+0.4
3,021,449	+		IAI47_14290	0.22	-0.1
3,021,503	+		IAI47_14290	0.33	-0.4
3,021,503	+		IAI47_14290	0.33	+2.9
3,021,503	+		IAI47_14290	0.33	+0.9
3,021,504	-		IAI47_14290	0.34	-1.0
3,021,504	-		IAI47_14290	0.34	-1.1
3,021,504	-		IAI47_14290	0.34	-0.5
3,021,509	+		IAI47_14290	0.35	-0.6
3,021,509	+		IAI47_14290	0.35	-0.3
3,021,510	-		IAI47_14290	0.35	+2.1
3,021,510	-		IAI47_14290	0.35	+0.1
3,021,511	+		IAI47_14290	0.35	+1.4
3,021,535	+		IAI47_14290	0.40	-1.6
3,021,535	+		IAI47_14290	0.40	+0.6
3,021,536	-		IAI47_14290	0.40	-1.1
3,021,536	-		IAI47_14290	0.40	+0.7
3,021,536	-		IAI47_14290	0.40	+1.0
3,021,577	+		IAI47_14290	0.49	-1.1
3,021,589	+		IAI47_14290	0.51	-1.9
3,021,589	+		IAI47_14290	0.51	-0.1
3,021,772	+		IAI47_14290	0.89	-2.1
3,021,772	+		IAI47_14290	0.89	+1.9
3,021,772	+		IAI47_14290	0.89	-0.5
3,021,773	-		IAI47_14290	0.89	-1.6
3,021,773	-		IAI47_14290	0.89	-0.9
3,021,773	-		IAI47_14290	0.89	+0.7
3,021,773	-		IAI47_14290	0.89	+0.3
3,021,775	+		IAI47_14290	0.89	+0.4
3,021,775	+		IAI47_14290	0.89	-0.4
3,021,775	+		IAI47_14290	0.89	+3.3
3,021,776	-		IAI47_14290	0.90	-0.7
3,021,776	-		IAI47_14290	0.90	-0.9
3,021,776	-		IAI47_14290	0.90	-0.2
3,021,776	-		IAI47_14290	0.90	-0.1
3,021,808	+				+1.0
3,021,808	+				+0.1
3,021,847	-				-0.3
3,021,970	-				-1.2
3,022,124	-				-1.2
3,022,127	-				-0.9
3,022,179	-		IAI47_14295	0.15	-0.0
3,022,187	+		IAI47_14295	0.17	-1.3
3,022,216	-		IAI47_14295	0.28	-1.5
3,022,234	+		IAI47_14295	0.34	-2.5
3,022,240	-		IAI47_14295	0.36	+0.6
3,022,305	-		IAI47_14295	0.59	-0.3
3,022,305	-		IAI47_14295	0.59	-1.1
3,022,307	+		IAI47_14295	0.60	+0.2
3,022,381	+		IAI47_14295	0.86	-0.5
3,022,385	+		IAI47_14295	0.88	-2.3
3,022,558	+				-0.5
3,022,558	+				-2.4
3,022,558	+				-0.9
3,022,559	-				-1.7
3,022,559	-				+0.8
3,022,561	-				-0.9
3,022,569	+				-0.1
3,022,569	+				-0.2
3,022,570	-				-0.7
3,022,625	+				+0.8
3,022,718	+				-2.2
3,022,718	+				-0.8
3,022,719	-				-1.1
3,022,719	-				+0.6
3,022,720	+				-2.4
3,022,723	+				-0.3
3,022,724	-				+2.1
3,022,724	-				+2.5
3,022,735	+				-2.4
3,022,737	+				-0.1
3,022,738	-				+0.1
3,022,753	-				+1.9
3,022,753	-				-1.0
3,022,756	+				+0.7
3,022,756	+				-1.5
3,022,756	+				-0.9
3,022,756	+				+0.2
3,022,756	+				+0.6
3,022,756	+				-2.5
3,022,756	+				-1.1
3,022,757	-				+2.0
3,022,786	+				+0.5
3,022,816	+				+0.1
3,022,816	+				+2.5
3,022,816	+				+0.5
3,022,816	+				-1.0
3,022,817	-				+0.4
3,022,817	-				+0.3
3,022,817	-				+1.0
3,022,817	-				+0.6
3,022,817	-				-0.1
3,022,871	+				-0.1
3,022,871	+				-1.2
3,022,927	+				-2.3
3,022,927	+				-0.6
3,022,927	+				+0.4
3,022,927	+				-1.8
3,022,928	-				-2.4
3,022,928	-				+1.0
3,022,928	-				-1.0
3,022,933	+				+0.3
3,022,933	+				-1.1
3,022,933	+				+0.1
3,022,933	+				+0.3
3,022,933	+				+1.0
3,022,934	-				-2.3
3,022,934	-				-0.8
3,022,934	-				-1.1
3,022,941	+				+0.0
3,022,942	-				-1.1
3,022,942	-				-1.9
3,022,942	-				+1.6
3,022,942	-				-0.5
3,023,057	+				-0.4
3,023,058	-				+0.0
3,023,058	-				-0.9
3,023,105	+				-0.3
3,023,105	+				-1.4
3,023,105	+				-0.0
3,023,105	+				+0.3
3,023,106	-				+0.9
3,023,106	-				-0.1
3,023,117	+				-0.2
3,023,117	+				+0.6
3,023,118	-				-0.9
3,023,122	+				-0.1
3,023,123	-				-1.1
3,023,160	-				-0.3
3,023,167	+				-1.2
3,023,168	-				+0.1
3,023,168	-				-0.6
3,023,183	+				+0.7
3,023,184	-				-1.3
3,023,239	+				+0.4
3,023,240	-				+1.2
3,023,247	+				+1.9
3,023,252	-				+1.0
3,023,256	+		IAI47_14300	0.10	-0.9
3,023,257	-		IAI47_14300	0.10	+2.8
3,023,260	+		IAI47_14300	0.11	-1.0
3,023,260	+		IAI47_14300	0.11	+0.9
3,023,261	-		IAI47_14300	0.11	+0.9
3,023,340	+		IAI47_14300	0.20	+0.6
3,023,350	+		IAI47_14300	0.21	-0.9
3,023,351	-		IAI47_14300	0.22	+2.7
3,023,351	-		IAI47_14300	0.22	-2.8
3,023,359	+		IAI47_14300	0.23	+0.9
3,023,360	-		IAI47_14300	0.23	-0.1
3,023,360	-		IAI47_14300	0.23	-1.3
3,023,360	-		IAI47_14300	0.23	-0.5