Strain Fitness in Pantoea sp. MT58 around IAI47_06600

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,372,268	-		IAI47_06590	0.67	-1.0
1,372,326	+		IAI47_06590	0.72	+0.9
1,372,326	+		IAI47_06590	0.72	+0.1
1,372,326	+		IAI47_06590	0.72	+1.0
1,372,326	+		IAI47_06590	0.72	-0.8
1,372,327	-		IAI47_06590	0.72	-1.3
1,372,327	-		IAI47_06590	0.72	-0.1
1,372,327	-		IAI47_06590	0.72	+0.1
1,372,628	+				+0.6
1,372,628	+				+1.3
1,372,628	+				-1.2
1,372,628	+				-0.4
1,372,628	+				+1.4
1,372,628	+				+3.2
1,372,628	+				-0.9
1,372,628	+				-1.3
1,372,629	-				-1.3
1,372,703	+				+1.2
1,372,703	+				+0.9
1,372,704	-				+2.8
1,372,767	+				+0.3
1,372,798	+				-1.4
1,372,798	+				+1.6
1,372,798	+				+1.0
1,372,798	+				+0.6
1,372,802	+				-0.2
1,372,802	+				+0.6
1,372,802	+				+0.1
1,372,802	+				+0.3
1,372,802	+				-1.1
1,372,802	+				+2.1
1,372,802	+				+1.6
1,372,802	+				-1.2
1,372,802	+				-1.2
1,372,802	+				-0.8
1,372,802	+				+0.4
1,372,802	+				+1.8
1,372,802	+				+0.6
1,372,803	-				-1.8
1,372,803	-				+0.7
1,372,803	-				-0.5
1,372,803	-				+2.4
1,372,803	-				+1.6
1,372,803	-				+2.1
1,372,803	-				+0.4
1,372,803	-				-0.3
1,372,803	-				-1.1
1,372,803	-				+1.2
1,372,803	-				+0.3
1,372,803	-				-0.9
1,372,803	-				+1.3
1,372,803	-				-1.4
1,372,803	-				-0.8
1,372,803	-				+0.3
1,372,803	-				-0.3
1,372,803	-				-0.8
1,372,803	-				-0.3
1,372,803	-				-0.5
1,372,803	-				-0.1
1,372,803	-				-0.6
1,372,804	+				-0.2
1,372,804	+				+2.0
1,372,804	+				+1.3
1,372,805	-				+0.1
1,372,805	-				+0.5
1,372,821	+				+0.3
1,372,821	+				-0.5
1,372,822	-				-0.1
1,372,822	-				-0.1
1,372,822	-				+0.5
1,372,822	-				+1.7
1,372,822	-				+0.7
1,372,923	+				+0.8
1,372,923	+				+0.1
1,372,923	+				+0.1
1,372,924	-				+0.2
1,372,942	+				-0.2
1,372,942	+				+2.2
1,372,942	+				+0.1
1,372,942	+				-0.2
1,372,943	-				-1.2
1,372,943	-				-0.3
1,372,943	-				-0.0
1,372,947	+				-0.8
1,372,947	+				-0.3
1,372,947	+				+1.3
1,372,947	+				-0.6
1,372,947	+				-0.9
1,372,948	-				-1.5
1,372,948	-				-3.2
1,372,948	-				+1.2
1,372,948	-				-1.4
1,372,948	-				-0.9
1,373,114	+		IAI47_06595	0.52	+0.1
1,373,114	+		IAI47_06595	0.52	+0.3
1,373,115	-		IAI47_06595	0.52	-2.4
1,373,115	-		IAI47_06595	0.52	+1.7
1,373,115	-		IAI47_06595	0.52	+0.4
1,373,211	+		IAI47_06595	0.82	+1.1
1,373,212	-		IAI47_06595	0.82	+0.7
1,373,212	-		IAI47_06595	0.82	-0.4
1,373,244	-				-1.7
1,373,256	+				+0.5
1,373,256	+				-2.5
1,373,266	+				-0.0
1,373,266	+				-0.0
1,373,266	+				+1.4
1,373,266	+				-1.1
1,373,267	-				+2.4
1,373,267	-				+1.4
1,373,285	+				+0.1
1,373,286	-				-0.1
1,373,298	+				+1.1
1,373,298	+				-1.7
1,373,298	+				-0.4
1,373,298	+				-1.1
1,373,299	-				+3.1
1,373,299	-				+0.3
1,373,299	-				-1.1
1,373,299	-				+0.2
1,373,299	-				+0.6
1,373,371	+				-0.7
1,373,416	+		IAI47_06600	0.10	-0.6
1,373,416	+		IAI47_06600	0.10	-0.1
1,373,417	-		IAI47_06600	0.10	+0.8
1,373,424	+		IAI47_06600	0.11	-2.0
1,373,554	+		IAI47_06600	0.19	+0.5
1,373,554	+		IAI47_06600	0.19	-1.6
1,373,554	+		IAI47_06600	0.19	-0.6
1,373,555	-		IAI47_06600	0.19	+1.2
1,373,555	-		IAI47_06600	0.19	+1.4
1,373,560	+		IAI47_06600	0.19	-0.8
1,373,560	+		IAI47_06600	0.19	-0.7
1,373,560	+		IAI47_06600	0.19	-0.1
1,373,560	+		IAI47_06600	0.19	+0.8
1,373,560	+		IAI47_06600	0.19	-1.1
1,373,560	+		IAI47_06600	0.19	+1.4
1,373,560	+		IAI47_06600	0.19	-0.5
1,373,560	+		IAI47_06600	0.19	+0.2
1,373,560	+		IAI47_06600	0.19	-1.1
1,373,560	+		IAI47_06600	0.19	-1.9
1,373,561	-		IAI47_06600	0.19	+0.3
1,373,561	-		IAI47_06600	0.19	-1.3
1,373,561	-		IAI47_06600	0.19	+0.3
1,373,645	-		IAI47_06600	0.24	+1.7
1,373,685	+		IAI47_06600	0.27	+0.3
1,373,685	+		IAI47_06600	0.27	-2.0
1,373,686	-		IAI47_06600	0.27	+1.4
1,373,686	-		IAI47_06600	0.27	-0.4
1,373,686	-		IAI47_06600	0.27	+0.2
1,373,687	+		IAI47_06600	0.27	-0.5
1,373,688	-		IAI47_06600	0.27	-0.2
1,373,707	+		IAI47_06600	0.28	+0.8
1,373,707	+		IAI47_06600	0.28	+0.1
1,373,708	-		IAI47_06600	0.28	+0.1
1,373,746	+		IAI47_06600	0.31	-1.6
1,373,746	+		IAI47_06600	0.31	+0.0
1,373,746	+		IAI47_06600	0.31	+1.2
1,373,746	+		IAI47_06600	0.31	-0.5
1,373,747	-		IAI47_06600	0.31	-0.4
1,373,770	+		IAI47_06600	0.32	-0.1
1,373,770	+		IAI47_06600	0.32	+1.1
1,373,771	-		IAI47_06600	0.32	-2.0
1,373,888	-		IAI47_06600	0.39	-0.6
1,374,004	+		IAI47_06600	0.47	+1.3
1,374,004	+		IAI47_06600	0.47	+2.4
1,374,005	-		IAI47_06600	0.47	+1.2
1,374,105	+		IAI47_06600	0.53	+2.4
1,374,105	+		IAI47_06600	0.53	-1.3
1,374,105	+		IAI47_06600	0.53	+0.3
1,374,106	-		IAI47_06600	0.53	-0.6
1,374,184	+		IAI47_06600	0.58	+0.9
1,374,184	+		IAI47_06600	0.58	-0.6
1,374,184	+		IAI47_06600	0.58	+0.7
1,374,184	+		IAI47_06600	0.58	-0.4
1,374,185	-		IAI47_06600	0.58	+2.6
1,374,185	-		IAI47_06600	0.58	-0.9
1,374,185	-		IAI47_06600	0.58	-1.7
1,374,185	-		IAI47_06600	0.58	+1.9
1,374,185	-		IAI47_06600	0.58	+0.1
1,374,205	+		IAI47_06600	0.59	+0.5
1,374,205	+		IAI47_06600	0.59	-0.3
1,374,205	+		IAI47_06600	0.59	-0.2
1,374,206	-		IAI47_06600	0.59	-0.1
1,374,206	-		IAI47_06600	0.59	+1.3
1,374,215	-		IAI47_06600	0.60	-1.3
1,374,513	+		IAI47_06600	0.78	-0.8
1,374,513	+		IAI47_06600	0.78	-0.5
1,374,513	+		IAI47_06600	0.78	-1.9
1,374,514	-		IAI47_06600	0.78	-2.4
1,374,514	-		IAI47_06600	0.78	+1.3
1,374,514	-		IAI47_06600	0.78	+0.4
1,374,664	-		IAI47_06600	0.88	-1.3
1,374,664	-		IAI47_06600	0.88	+0.1
1,374,695	+		IAI47_06600	0.90	-1.0
1,374,838	+				+0.2
1,374,839	-				+0.4
1,374,998	+		IAI47_06605	0.13	-1.2
1,374,998	+		IAI47_06605	0.13	-1.2
1,374,999	-		IAI47_06605	0.14	+0.1
1,374,999	-		IAI47_06605	0.14	-1.9
1,375,067	-		IAI47_06605	0.20	+0.8
1,375,084	+		IAI47_06605	0.22	-0.5
1,375,084	+		IAI47_06605	0.22	+0.3
1,375,110	-		IAI47_06605	0.24	+0.5
1,375,110	-		IAI47_06605	0.24	-1.3
1,375,129	+		IAI47_06605	0.26	+0.0
1,375,129	+		IAI47_06605	0.26	-0.2
1,375,129	+		IAI47_06605	0.26	+2.8
1,375,130	-		IAI47_06605	0.26	-0.5
1,375,130	-		IAI47_06605	0.26	-0.6
1,375,130	-		IAI47_06605	0.26	+1.6
1,375,130	-		IAI47_06605	0.26	-0.9
1,375,130	-		IAI47_06605	0.26	-0.4
1,375,141	+		IAI47_06605	0.27	-1.7
1,375,141	+		IAI47_06605	0.27	-0.3
1,375,141	+		IAI47_06605	0.27	+3.3
1,375,141	+		IAI47_06605	0.27	-0.8
1,375,141	+		IAI47_06605	0.27	-1.4
1,375,142	-		IAI47_06605	0.28	-0.2
1,375,142	-		IAI47_06605	0.28	-2.2
1,375,142	-		IAI47_06605	0.28	+0.3
1,375,229	+		IAI47_06605	0.36	+4.5
1,375,229	+		IAI47_06605	0.36	+0.1
1,375,230	-		IAI47_06605	0.36	+0.5
1,375,230	-		IAI47_06605	0.36	-0.1
1,375,230	-		IAI47_06605	0.36	+3.4
1,375,386	+		IAI47_06605	0.51	-2.2
1,375,387	-		IAI47_06605	0.52	+1.9
1,375,462	+		IAI47_06605	0.59	+0.8
1,375,462	+		IAI47_06605	0.59	+2.9
1,375,462	+		IAI47_06605	0.59	+1.1
1,375,462	+		IAI47_06605	0.59	-0.6
1,375,462	+		IAI47_06605	0.59	-0.2
1,375,462	+		IAI47_06605	0.59	+0.4
1,375,462	+		IAI47_06605	0.59	-0.6
1,375,462	+		IAI47_06605	0.59	+0.7
1,375,462	+		IAI47_06605	0.59	-2.2
1,375,463	-		IAI47_06605	0.59	-2.1
1,375,463	-		IAI47_06605	0.59	+0.7
1,375,463	-		IAI47_06605	0.59	+1.7
1,375,463	-		IAI47_06605	0.59	-1.1
1,375,463	-		IAI47_06605	0.59	+0.3
1,375,463	-		IAI47_06605	0.59	-0.5
1,375,473	+		IAI47_06605	0.60	-0.4
1,375,473	+		IAI47_06605	0.60	+0.5
1,375,473	+		IAI47_06605	0.60	-0.5
1,375,473	+		IAI47_06605	0.60	-0.8
1,375,474	-		IAI47_06605	0.60	+2.5
1,375,474	-		IAI47_06605	0.60	-2.0
1,375,474	-		IAI47_06605	0.60	-0.5
1,375,490	+		IAI47_06605	0.62	+4.5
1,375,490	+		IAI47_06605	0.62	-2.0
1,375,490	+		IAI47_06605	0.62	-0.2
1,375,491	-		IAI47_06605	0.62	+0.5
1,375,654	-		IAI47_06605	0.78	+1.0
1,375,654	-		IAI47_06605	0.78	+1.6
1,375,673	+		IAI47_06605	0.79	-0.2
1,375,674	-		IAI47_06605	0.80	+1.0
1,375,683	+		IAI47_06605	0.80	+1.3
1,375,684	-		IAI47_06605	0.81	-0.1
1,375,699	-		IAI47_06605	0.82	+1.9
1,375,699	-		IAI47_06605	0.82	+1.7
1,375,734	+		IAI47_06605	0.85	-2.1