Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03645 and IAI47_03650 are separated by 80 nucleotides IAI47_03650 and IAI47_03655 are separated by 534 nucleotides
IAI47_03645: IAI47_03645 - O-antigen ligase family protein, at 756,896 to 758,119
_03645
IAI47_03650: IAI47_03650 - sugar porter family MFS transporter, at 758,200 to 759,597
_03650
IAI47_03655: IAI47_03655 - methionine adenosyltransferase, at 760,132 to 761,283
_03655
Position (kb) 758
759
760 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 757.200 kb on + strand, within IAI47_03645 at 757.200 kb on + strand, within IAI47_03645 at 757.200 kb on + strand, within IAI47_03645 at 757.201 kb on - strand, within IAI47_03645 at 757.201 kb on - strand, within IAI47_03645 at 757.235 kb on + strand, within IAI47_03645 at 757.235 kb on + strand, within IAI47_03645 at 757.235 kb on + strand, within IAI47_03645 at 757.236 kb on - strand, within IAI47_03645 at 757.236 kb on - strand, within IAI47_03645 at 757.255 kb on + strand, within IAI47_03645 at 757.255 kb on + strand, within IAI47_03645 at 757.281 kb on + strand, within IAI47_03645 at 757.282 kb on - strand, within IAI47_03645 at 757.303 kb on + strand, within IAI47_03645 at 757.304 kb on - strand, within IAI47_03645 at 757.304 kb on - strand, within IAI47_03645 at 757.319 kb on - strand, within IAI47_03645 at 757.334 kb on + strand, within IAI47_03645 at 757.334 kb on + strand, within IAI47_03645 at 757.334 kb on + strand, within IAI47_03645 at 757.334 kb on + strand, within IAI47_03645 at 757.335 kb on - strand, within IAI47_03645 at 757.335 kb on - strand, within IAI47_03645 at 757.335 kb on - strand, within IAI47_03645 at 757.337 kb on - strand, within IAI47_03645 at 757.346 kb on - strand, within IAI47_03645 at 757.388 kb on + strand, within IAI47_03645 at 757.388 kb on + strand, within IAI47_03645 at 757.388 kb on + strand, within IAI47_03645 at 757.388 kb on + strand, within IAI47_03645 at 757.388 kb on + strand, within IAI47_03645 at 757.389 kb on - strand, within IAI47_03645 at 757.389 kb on - strand, within IAI47_03645 at 757.389 kb on - strand, within IAI47_03645 at 757.389 kb on - strand, within IAI47_03645 at 757.389 kb on - strand, within IAI47_03645 at 757.402 kb on + strand, within IAI47_03645 at 757.402 kb on + strand, within IAI47_03645 at 757.407 kb on - strand, within IAI47_03645 at 757.407 kb on - strand, within IAI47_03645 at 757.407 kb on - strand, within IAI47_03645 at 757.407 kb on - strand, within IAI47_03645 at 757.407 kb on - strand, within IAI47_03645 at 757.407 kb on - strand, within IAI47_03645 at 757.419 kb on + strand, within IAI47_03645 at 757.449 kb on - strand, within IAI47_03645 at 757.449 kb on - strand, within IAI47_03645 at 757.499 kb on + strand, within IAI47_03645 at 757.499 kb on + strand, within IAI47_03645 at 757.499 kb on + strand, within IAI47_03645 at 757.499 kb on + strand, within IAI47_03645 at 757.499 kb on + strand, within IAI47_03645 at 757.499 kb on + strand, within IAI47_03645 at 757.500 kb on - strand, within IAI47_03645 at 757.500 kb on - strand, within IAI47_03645 at 757.500 kb on - strand, within IAI47_03645 at 757.569 kb on - strand, within IAI47_03645 at 757.569 kb on - strand, within IAI47_03645 at 757.569 kb on - strand, within IAI47_03645 at 757.600 kb on + strand, within IAI47_03645 at 757.600 kb on + strand, within IAI47_03645 at 757.685 kb on + strand, within IAI47_03645 at 757.685 kb on + strand, within IAI47_03645 at 757.685 kb on + strand, within IAI47_03645 at 757.685 kb on + strand, within IAI47_03645 at 757.685 kb on + strand, within IAI47_03645 at 757.685 kb on + strand, within IAI47_03645 at 757.685 kb on + strand, within IAI47_03645 at 757.685 kb on + strand, within IAI47_03645 at 757.686 kb on - strand, within IAI47_03645 at 757.686 kb on - strand, within IAI47_03645 at 757.727 kb on - strand, within IAI47_03645 at 757.727 kb on - strand, within IAI47_03645 at 757.727 kb on - strand, within IAI47_03645 at 757.727 kb on - strand, within IAI47_03645 at 757.823 kb on - strand, within IAI47_03645 at 757.824 kb on - strand, within IAI47_03645 at 757.824 kb on - strand, within IAI47_03645 at 757.824 kb on - strand, within IAI47_03645 at 757.824 kb on - strand, within IAI47_03645 at 757.834 kb on + strand, within IAI47_03645 at 757.834 kb on + strand, within IAI47_03645 at 757.834 kb on + strand, within IAI47_03645 at 757.834 kb on + strand, within IAI47_03645 at 757.835 kb on - strand, within IAI47_03645 at 757.844 kb on + strand, within IAI47_03645 at 757.844 kb on + strand, within IAI47_03645 at 757.845 kb on - strand, within IAI47_03645 at 757.845 kb on - strand, within IAI47_03645 at 757.845 kb on - strand, within IAI47_03645 at 757.846 kb on + strand, within IAI47_03645 at 757.846 kb on + strand, within IAI47_03645 at 757.846 kb on + strand, within IAI47_03645 at 757.846 kb on + strand, within IAI47_03645 at 757.846 kb on + strand, within IAI47_03645 at 757.847 kb on - strand, within IAI47_03645 at 757.847 kb on - strand, within IAI47_03645 at 757.847 kb on - strand, within IAI47_03645 at 757.847 kb on - strand, within IAI47_03645 at 757.847 kb on - strand, within IAI47_03645 at 757.847 kb on - strand, within IAI47_03645 at 757.847 kb on - strand, within IAI47_03645 at 757.847 kb on - strand, within IAI47_03645 at 757.847 kb on - strand, within IAI47_03645 at 757.855 kb on + strand, within IAI47_03645 at 757.856 kb on - strand, within IAI47_03645 at 757.856 kb on - strand, within IAI47_03645 at 757.856 kb on - strand, within IAI47_03645 at 757.856 kb on - strand, within IAI47_03645 at 757.859 kb on + strand, within IAI47_03645 at 757.859 kb on + strand, within IAI47_03645 at 757.859 kb on + strand, within IAI47_03645 at 757.860 kb on - strand, within IAI47_03645 at 757.860 kb on - strand, within IAI47_03645 at 757.860 kb on - strand, within IAI47_03645 at 757.860 kb on - strand, within IAI47_03645 at 757.860 kb on - strand, within IAI47_03645 at 757.860 kb on - strand, within IAI47_03645 at 757.934 kb on + strand, within IAI47_03645 at 757.935 kb on - strand, within IAI47_03645 at 757.935 kb on - strand, within IAI47_03645 at 757.935 kb on - strand, within IAI47_03645 at 757.935 kb on - strand, within IAI47_03645 at 758.008 kb on + strand at 758.008 kb on + strand at 758.008 kb on + strand at 758.009 kb on - strand at 758.039 kb on + strand at 758.039 kb on + strand at 758.039 kb on + strand at 758.039 kb on + strand at 758.039 kb on + strand at 758.039 kb on + strand at 758.039 kb on + strand at 758.039 kb on + strand at 758.039 kb on + strand at 758.039 kb on + strand at 758.039 kb on + strand at 758.040 kb on - strand at 758.040 kb on - strand at 758.040 kb on - strand at 758.040 kb on - strand at 758.040 kb on - strand at 758.040 kb on - strand at 758.040 kb on - strand at 758.040 kb on - strand at 758.040 kb on - strand at 758.041 kb on + strand at 758.041 kb on + strand at 758.041 kb on + strand at 758.041 kb on + strand at 758.042 kb on - strand at 758.042 kb on - strand at 758.042 kb on - strand at 758.042 kb on - strand at 758.062 kb on + strand at 758.063 kb on - strand at 758.065 kb on + strand at 758.086 kb on + strand at 758.086 kb on + strand at 758.086 kb on + strand at 758.086 kb on + strand at 758.086 kb on + strand at 758.087 kb on - strand at 758.087 kb on - strand at 758.087 kb on - strand at 758.088 kb on + strand at 758.088 kb on + strand at 758.117 kb on + strand at 758.117 kb on + strand at 758.117 kb on + strand at 758.117 kb on + strand at 758.117 kb on + strand at 758.117 kb on + strand at 758.117 kb on + strand at 758.117 kb on + strand at 758.117 kb on + strand at 758.117 kb on + strand at 758.117 kb on + strand at 758.118 kb on - strand at 758.118 kb on - strand at 758.118 kb on - strand at 758.118 kb on - strand at 758.134 kb on + strand at 758.135 kb on - strand at 758.136 kb on + strand at 758.137 kb on - strand at 758.195 kb on + strand at 758.195 kb on + strand at 758.195 kb on + strand at 758.195 kb on + strand at 758.195 kb on + strand at 758.195 kb on + strand at 758.196 kb on - strand at 758.196 kb on - strand at 758.196 kb on - strand at 758.196 kb on - strand at 758.201 kb on + strand at 758.232 kb on + strand at 758.232 kb on + strand at 758.233 kb on - strand at 758.233 kb on - strand at 758.233 kb on - strand at 758.247 kb on + strand at 758.247 kb on + strand at 758.247 kb on + strand at 758.248 kb on - strand at 758.333 kb on + strand at 758.364 kb on + strand, within IAI47_03650 at 758.364 kb on + strand, within IAI47_03650 at 758.365 kb on - strand, within IAI47_03650 at 758.424 kb on + strand, within IAI47_03650 at 758.424 kb on + strand, within IAI47_03650 at 758.476 kb on + strand, within IAI47_03650 at 758.479 kb on + strand, within IAI47_03650 at 758.479 kb on + strand, within IAI47_03650 at 758.520 kb on + strand, within IAI47_03650 at 758.535 kb on + strand, within IAI47_03650 at 758.536 kb on - strand, within IAI47_03650 at 758.549 kb on + strand, within IAI47_03650 at 758.550 kb on - strand, within IAI47_03650 at 758.572 kb on - strand, within IAI47_03650 at 758.572 kb on - strand, within IAI47_03650 at 758.589 kb on + strand, within IAI47_03650 at 758.589 kb on + strand, within IAI47_03650 at 758.590 kb on - strand, within IAI47_03650 at 758.622 kb on + strand, within IAI47_03650 at 758.622 kb on + strand, within IAI47_03650 at 758.622 kb on + strand, within IAI47_03650 at 758.622 kb on + strand, within IAI47_03650 at 758.622 kb on + strand, within IAI47_03650 at 758.622 kb on + strand, within IAI47_03650 at 758.623 kb on - strand, within IAI47_03650 at 758.623 kb on - strand, within IAI47_03650 at 758.623 kb on - strand, within IAI47_03650 at 758.640 kb on + strand, within IAI47_03650 at 758.640 kb on + strand, within IAI47_03650 at 758.641 kb on - strand, within IAI47_03650 at 758.641 kb on - strand, within IAI47_03650 at 758.646 kb on + strand, within IAI47_03650 at 758.646 kb on + strand, within IAI47_03650 at 758.646 kb on + strand, within IAI47_03650 at 758.647 kb on - strand, within IAI47_03650 at 758.673 kb on + strand, within IAI47_03650 at 758.674 kb on - strand, within IAI47_03650 at 758.674 kb on - strand, within IAI47_03650 at 758.679 kb on + strand, within IAI47_03650 at 758.679 kb on + strand, within IAI47_03650 at 758.679 kb on + strand, within IAI47_03650 at 758.679 kb on + strand, within IAI47_03650 at 758.679 kb on + strand, within IAI47_03650 at 758.679 kb on + strand, within IAI47_03650 at 758.680 kb on - strand, within IAI47_03650 at 758.680 kb on - strand, within IAI47_03650 at 758.680 kb on - strand, within IAI47_03650 at 758.743 kb on - strand, within IAI47_03650 at 758.743 kb on - strand, within IAI47_03650 at 758.777 kb on + strand, within IAI47_03650 at 758.777 kb on + strand, within IAI47_03650 at 758.777 kb on + strand, within IAI47_03650 at 758.777 kb on + strand, within IAI47_03650 at 758.777 kb on + strand, within IAI47_03650 at 758.778 kb on - strand, within IAI47_03650 at 758.778 kb on - strand, within IAI47_03650 at 758.778 kb on - strand, within IAI47_03650 at 758.778 kb on - strand, within IAI47_03650 at 758.780 kb on + strand, within IAI47_03650 at 758.780 kb on + strand, within IAI47_03650 at 758.780 kb on + strand, within IAI47_03650 at 758.780 kb on + strand, within IAI47_03650 at 758.780 kb on + strand, within IAI47_03650 at 758.780 kb on + strand, within IAI47_03650 at 758.781 kb on - strand, within IAI47_03650 at 758.781 kb on - strand, within IAI47_03650 at 758.781 kb on - strand, within IAI47_03650 at 758.781 kb on - strand, within IAI47_03650 at 758.781 kb on - strand, within IAI47_03650 at 758.781 kb on - strand, within IAI47_03650 at 758.781 kb on - strand, within IAI47_03650 at 758.781 kb on - strand, within IAI47_03650 at 758.781 kb on - strand, within IAI47_03650 at 758.838 kb on - strand, within IAI47_03650 at 758.838 kb on - strand, within IAI47_03650 at 758.965 kb on + strand, within IAI47_03650 at 758.965 kb on + strand, within IAI47_03650 at 758.965 kb on + strand, within IAI47_03650 at 758.966 kb on - strand, within IAI47_03650 at 758.966 kb on - strand, within IAI47_03650 at 759.069 kb on + strand, within IAI47_03650 at 759.070 kb on - strand, within IAI47_03650 at 759.122 kb on + strand, within IAI47_03650 at 759.122 kb on + strand, within IAI47_03650 at 759.122 kb on + strand, within IAI47_03650 at 759.122 kb on + strand, within IAI47_03650 at 759.123 kb on - strand, within IAI47_03650 at 759.123 kb on - strand, within IAI47_03650 at 759.123 kb on - strand, within IAI47_03650 at 759.123 kb on - strand, within IAI47_03650 at 759.136 kb on - strand, within IAI47_03650 at 759.141 kb on + strand, within IAI47_03650 at 759.141 kb on + strand, within IAI47_03650 at 759.142 kb on - strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.145 kb on - strand, within IAI47_03650 at 759.145 kb on - strand, within IAI47_03650 at 759.145 kb on - strand, within IAI47_03650 at 759.145 kb on - strand, within IAI47_03650 at 759.210 kb on - strand, within IAI47_03650 at 759.223 kb on - strand, within IAI47_03650 at 759.223 kb on - strand, within IAI47_03650 at 759.224 kb on + strand, within IAI47_03650 at 759.224 kb on + strand, within IAI47_03650 at 759.224 kb on + strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.352 kb on - strand, within IAI47_03650 at 759.388 kb on - strand, within IAI47_03650 at 759.453 kb on + strand, within IAI47_03650 at 759.454 kb on - strand, within IAI47_03650 at 759.454 kb on - strand, within IAI47_03650 at 759.547 kb on + strand at 759.547 kb on + strand at 759.547 kb on + strand at 759.547 kb on + strand at 759.547 kb on + strand at 759.547 kb on + strand at 759.547 kb on + strand at 759.547 kb on + strand at 759.547 kb on + strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.561 kb on + strand at 759.585 kb on + strand at 759.585 kb on + strand at 759.586 kb on - strand at 759.586 kb on - strand at 759.586 kb on - strand at 759.586 kb on - strand at 759.600 kb on + strand at 759.600 kb on + strand at 759.600 kb on + strand at 759.600 kb on + strand at 759.601 kb on - strand at 759.601 kb on - strand at 759.601 kb on - strand at 759.601 kb on - strand at 759.614 kb on - strand at 759.614 kb on - strand at 759.614 kb on - strand at 759.621 kb on + strand at 759.629 kb on + strand at 759.720 kb on + strand at 759.721 kb on - strand at 759.742 kb on + strand at 759.742 kb on + strand at 759.742 kb on + strand at 759.742 kb on + strand at 759.742 kb on + strand at 759.742 kb on + strand at 759.743 kb on - strand at 759.743 kb on - strand at 759.743 kb on - strand at 759.743 kb on - strand at 759.754 kb on + strand at 759.754 kb on + strand at 759.754 kb on + strand at 759.754 kb on + strand at 759.754 kb on + strand at 759.754 kb on + strand at 759.754 kb on + strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.756 kb on + strand at 759.756 kb on + strand at 759.756 kb on + strand at 759.756 kb on + strand at 759.756 kb on + strand at 759.757 kb on - strand at 759.757 kb on - strand at 759.757 kb on - strand at 759.757 kb on - strand at 759.767 kb on - strand at 759.796 kb on + strand at 759.832 kb on - strand at 759.835 kb on - strand at 759.838 kb on + strand at 759.838 kb on + strand at 759.855 kb on - strand at 759.866 kb on - strand at 759.868 kb on - strand at 759.928 kb on + strand at 759.929 kb on - strand at 759.929 kb on - strand at 759.957 kb on + strand at 760.007 kb on + strand at 760.007 kb on + strand at 760.008 kb on - strand at 760.020 kb on + strand at 760.025 kb on + strand at 760.025 kb on + strand at 760.026 kb on - strand at 760.026 kb on - strand at 760.026 kb on - strand at 760.084 kb on + strand at 760.133 kb on + strand at 760.133 kb on + strand at 760.133 kb on + strand at 760.134 kb on - strand at 760.134 kb on - strand at 760.134 kb on - strand at 760.134 kb on - strand at 760.134 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 757,200 + IAI47_03645 0.25 -2.2 757,200 + IAI47_03645 0.25 -1.5 757,200 + IAI47_03645 0.25 -1.0 757,201 - IAI47_03645 0.25 -1.2 757,201 - IAI47_03645 0.25 -2.2 757,235 + IAI47_03645 0.28 -1.4 757,235 + IAI47_03645 0.28 -2.9 757,235 + IAI47_03645 0.28 -2.9 757,236 - IAI47_03645 0.28 -3.0 757,236 - IAI47_03645 0.28 -0.9 757,255 + IAI47_03645 0.29 -2.8 757,255 + IAI47_03645 0.29 -1.0 757,281 + IAI47_03645 0.31 -2.1 757,282 - IAI47_03645 0.32 -3.2 757,303 + IAI47_03645 0.33 -1.3 757,304 - IAI47_03645 0.33 -4.1 757,304 - IAI47_03645 0.33 -1.8 757,319 - IAI47_03645 0.35 -2.5 757,334 + IAI47_03645 0.36 -1.4 757,334 + IAI47_03645 0.36 -3.4 757,334 + IAI47_03645 0.36 -1.3 757,334 + IAI47_03645 0.36 +0.1 757,335 - IAI47_03645 0.36 -0.7 757,335 - IAI47_03645 0.36 -2.5 757,335 - IAI47_03645 0.36 +1.1 757,337 - IAI47_03645 0.36 -2.3 757,346 - IAI47_03645 0.37 -2.3 757,388 + IAI47_03645 0.40 -1.2 757,388 + IAI47_03645 0.40 -2.2 757,388 + IAI47_03645 0.40 -1.7 757,388 + IAI47_03645 0.40 -0.8 757,388 + IAI47_03645 0.40 -0.2 757,389 - IAI47_03645 0.40 -1.2 757,389 - IAI47_03645 0.40 -3.5 757,389 - IAI47_03645 0.40 -2.1 757,389 - IAI47_03645 0.40 -3.5 757,389 - IAI47_03645 0.40 -2.9 757,402 + IAI47_03645 0.41 -1.9 757,402 + IAI47_03645 0.41 -1.1 757,407 - IAI47_03645 0.42 +0.3 757,407 - IAI47_03645 0.42 -0.2 757,407 - IAI47_03645 0.42 -2.8 757,407 - IAI47_03645 0.42 -1.3 757,407 - IAI47_03645 0.42 +0.7 757,407 - IAI47_03645 0.42 -2.1 757,419 + IAI47_03645 0.43 -1.7 757,449 - IAI47_03645 0.45 -2.3 757,449 - IAI47_03645 0.45 -0.8 757,499 + IAI47_03645 0.49 -0.4 757,499 + IAI47_03645 0.49 -2.3 757,499 + IAI47_03645 0.49 -0.1 757,499 + IAI47_03645 0.49 -0.0 757,499 + IAI47_03645 0.49 -2.7 757,499 + IAI47_03645 0.49 -1.9 757,500 - IAI47_03645 0.49 -2.1 757,500 - IAI47_03645 0.49 -1.4 757,500 - IAI47_03645 0.49 -2.6 757,569 - IAI47_03645 0.55 -2.3 757,569 - IAI47_03645 0.55 -1.1 757,569 - IAI47_03645 0.55 -2.6 757,600 + IAI47_03645 0.58 -0.1 757,600 + IAI47_03645 0.58 -2.5 757,685 + IAI47_03645 0.64 -2.8 757,685 + IAI47_03645 0.64 -2.7 757,685 + IAI47_03645 0.64 -2.8 757,685 + IAI47_03645 0.64 -2.3 757,685 + IAI47_03645 0.64 -1.1 757,685 + IAI47_03645 0.64 -3.0 757,685 + IAI47_03645 0.64 -1.3 757,685 + IAI47_03645 0.64 -1.7 757,686 - 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Or see this region's nucleotide sequence