Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01235 and IAI47_01240 overlap by 4 nucleotides IAI47_01240 and IAI47_01245 are separated by 10 nucleotides IAI47_01245 and IAI47_01250 are separated by 16 nucleotides
IAI47_01235: IAI47_01235 - potassium-transporting ATPase subunit KdpA, at 264,307 to 265,995
_01235
IAI47_01240: IAI47_01240 - potassium-transporting ATPase subunit KdpB, at 265,992 to 268,040
_01240
IAI47_01245: IAI47_01245 - potassium-transporting ATPase subunit KdpC, at 268,051 to 268,617
_01245
IAI47_01250: IAI47_01250 - two-component system sensor histidine kinase KdbD, at 268,634 to 271,309
_01250
Position (kb) 265
266
267
268
269 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 265.047 kb on - strand, within IAI47_01235 at 265.290 kb on + strand, within IAI47_01235 at 265.290 kb on + strand, within IAI47_01235 at 265.290 kb on + strand, within IAI47_01235 at 265.291 kb on - strand, within IAI47_01235 at 265.291 kb on - strand, within IAI47_01235 at 265.314 kb on + strand, within IAI47_01235 at 265.314 kb on + strand, within IAI47_01235 at 265.314 kb on + strand, within IAI47_01235 at 265.314 kb on + strand, within IAI47_01235 at 265.314 kb on + strand, within IAI47_01235 at 265.315 kb on - strand, within IAI47_01235 at 265.341 kb on + strand, within IAI47_01235 at 265.415 kb on + strand, within IAI47_01235 at 265.415 kb on + strand, within IAI47_01235 at 265.415 kb on + strand, within IAI47_01235 at 265.415 kb on + strand, within IAI47_01235 at 265.415 kb on + strand, within IAI47_01235 at 265.416 kb on - strand, within IAI47_01235 at 265.416 kb on - strand, within IAI47_01235 at 265.416 kb on - strand, within IAI47_01235 at 265.416 kb on - strand, within IAI47_01235 at 265.441 kb on + strand, within IAI47_01235 at 265.441 kb on + strand, within IAI47_01235 at 265.442 kb on - strand, within IAI47_01235 at 265.460 kb on + strand, within IAI47_01235 at 265.460 kb on + strand, within IAI47_01235 at 265.460 kb on + strand, within IAI47_01235 at 265.460 kb on + strand, within IAI47_01235 at 265.460 kb on + strand, within IAI47_01235 at 265.460 kb on + strand, within IAI47_01235 at 265.461 kb on - strand, within IAI47_01235 at 265.461 kb on - strand, within IAI47_01235 at 265.461 kb on - strand, within IAI47_01235 at 265.476 kb on + strand, within IAI47_01235 at 265.673 kb on - strand, within IAI47_01235 at 265.673 kb on - strand, within IAI47_01235 at 265.751 kb on + strand, within IAI47_01235 at 265.881 kb on + strand at 265.881 kb on + strand at 265.882 kb on - strand at 265.882 kb on - strand at 265.882 kb on - strand at 265.929 kb on + strand at 265.929 kb on + strand at 265.929 kb on + strand at 265.929 kb on + strand at 265.930 kb on - strand at 265.930 kb on - strand at 265.930 kb on - strand at 266.014 kb on + strand at 266.014 kb on + strand at 266.015 kb on - strand at 266.036 kb on + strand at 266.037 kb on - strand at 266.037 kb on - strand at 266.056 kb on + strand at 266.110 kb on - strand at 266.183 kb on + strand at 266.261 kb on + strand, within IAI47_01240 at 266.261 kb on + strand, within IAI47_01240 at 266.372 kb on + strand, within IAI47_01240 at 266.372 kb on + strand, within IAI47_01240 at 266.405 kb on + strand, within IAI47_01240 at 266.466 kb on - strand, within IAI47_01240 at 266.485 kb on + strand, within IAI47_01240 at 266.534 kb on + strand, within IAI47_01240 at 266.534 kb on + strand, within IAI47_01240 at 266.534 kb on + strand, within IAI47_01240 at 266.535 kb on - strand, within IAI47_01240 at 266.606 kb on + strand, within IAI47_01240 at 266.606 kb on + strand, within IAI47_01240 at 266.607 kb on - strand, within IAI47_01240 at 266.607 kb on - strand, within IAI47_01240 at 266.752 kb on + strand, within IAI47_01240 at 267.053 kb on - strand, within IAI47_01240 at 267.113 kb on + strand, within IAI47_01240 at 267.113 kb on + strand, within IAI47_01240 at 267.114 kb on - strand, within IAI47_01240 at 267.114 kb on - strand, within IAI47_01240 at 267.332 kb on + strand, within IAI47_01240 at 267.332 kb on + strand, within IAI47_01240 at 267.410 kb on + strand, within IAI47_01240 at 267.410 kb on + strand, within IAI47_01240 at 267.411 kb on - strand, within IAI47_01240 at 267.507 kb on + strand, within IAI47_01240 at 267.507 kb on + strand, within IAI47_01240 at 267.686 kb on + strand, within IAI47_01240 at 267.729 kb on - strand, within IAI47_01240 at 267.729 kb on - strand, within IAI47_01240 at 267.729 kb on - strand, within IAI47_01240 at 267.762 kb on - strand, within IAI47_01240 at 267.786 kb on + strand, within IAI47_01240 at 267.787 kb on - strand, within IAI47_01240 at 267.787 kb on - strand, within IAI47_01240 at 267.806 kb on + strand, within IAI47_01240 at 267.806 kb on + strand, within IAI47_01240 at 267.806 kb on + strand, within IAI47_01240 at 267.806 kb on + strand, within IAI47_01240 at 267.807 kb on - strand, within IAI47_01240 at 267.807 kb on - strand, within IAI47_01240 at 267.807 kb on - strand, within IAI47_01240 at 267.807 kb on - strand, within IAI47_01240 at 267.912 kb on + strand at 267.912 kb on + strand at 267.913 kb on - strand at 267.960 kb on + strand at 267.960 kb on + strand at 267.961 kb on - strand at 267.961 kb on - strand at 268.018 kb on + strand at 268.018 kb on + strand at 268.019 kb on - strand at 268.019 kb on - strand at 268.061 kb on + strand at 268.061 kb on + strand at 268.062 kb on - strand at 268.062 kb on - strand at 268.092 kb on + strand at 268.092 kb on + strand at 268.092 kb on + strand at 268.092 kb on + strand at 268.093 kb on - strand at 268.093 kb on - strand at 268.093 kb on - strand at 268.093 kb on - strand at 268.093 kb on - strand at 268.114 kb on + strand, within IAI47_01245 at 268.114 kb on + strand, within IAI47_01245 at 268.114 kb on + strand, within IAI47_01245 at 268.114 kb on + strand, within IAI47_01245 at 268.115 kb on - strand, within IAI47_01245 at 268.115 kb on - strand, within IAI47_01245 at 268.115 kb on - strand, within IAI47_01245 at 268.125 kb on + strand, within IAI47_01245 at 268.125 kb on + strand, within IAI47_01245 at 268.125 kb on + strand, within IAI47_01245 at 268.125 kb on + strand, within IAI47_01245 at 268.125 kb on + strand, within IAI47_01245 at 268.126 kb on - strand, within IAI47_01245 at 268.126 kb on - strand, within IAI47_01245 at 268.126 kb on - strand, within IAI47_01245 at 268.126 kb on - strand, within IAI47_01245 at 268.128 kb on + strand, within IAI47_01245 at 268.128 kb on + strand, within IAI47_01245 at 268.128 kb on + strand, within IAI47_01245 at 268.128 kb on + strand, within IAI47_01245 at 268.128 kb on + strand, within IAI47_01245 at 268.128 kb on + strand, within IAI47_01245 at 268.128 kb on + strand, within IAI47_01245 at 268.129 kb on - strand, within IAI47_01245 at 268.129 kb on - strand, within IAI47_01245 at 268.129 kb on - strand, within IAI47_01245 at 268.241 kb on - strand, within IAI47_01245 at 268.241 kb on - strand, within IAI47_01245 at 268.241 kb on - strand, within IAI47_01245 at 268.279 kb on + strand, within IAI47_01245 at 268.279 kb on + strand, within IAI47_01245 at 268.279 kb on + strand, within IAI47_01245 at 268.279 kb on + strand, within IAI47_01245 at 268.279 kb on + strand, within IAI47_01245 at 268.279 kb on + strand, within IAI47_01245 at 268.279 kb on + strand, within IAI47_01245 at 268.280 kb on - strand, within IAI47_01245 at 268.280 kb on - strand, within IAI47_01245 at 268.280 kb on - strand, within IAI47_01245 at 268.282 kb on - strand, within IAI47_01245 at 268.444 kb on - strand, within IAI47_01245 at 268.596 kb on + strand at 268.596 kb on + strand at 268.597 kb on - strand at 268.615 kb on + strand at 268.615 kb on + strand at 268.615 kb on + strand at 268.615 kb on + strand at 268.615 kb on + strand at 268.615 kb on + strand at 268.615 kb on + strand at 268.615 kb on + strand at 268.615 kb on + strand at 268.615 kb on + strand at 268.616 kb on - strand at 268.616 kb on - strand at 268.616 kb on - strand at 268.616 kb on - strand at 268.616 kb on - strand at 268.616 kb on - strand at 268.624 kb on + strand at 268.624 kb on + strand at 268.625 kb on - strand at 268.625 kb on - strand at 268.625 kb on - strand at 268.748 kb on + strand at 268.748 kb on + strand at 268.749 kb on - strand at 268.812 kb on + strand at 268.812 kb on + strand at 268.812 kb on + strand at 268.812 kb on + strand at 268.812 kb on + strand at 268.812 kb on + strand at 268.812 kb on + strand at 268.813 kb on - strand at 268.857 kb on + strand at 268.858 kb on - strand at 268.975 kb on + strand, within IAI47_01250 at 269.008 kb on + strand, within IAI47_01250
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 265,047 - IAI47_01235 0.44 -2.2 265,290 + IAI47_01235 0.58 +0.5 265,290 + IAI47_01235 0.58 -0.2 265,290 + IAI47_01235 0.58 -1.5 265,291 - IAI47_01235 0.58 -0.3 265,291 - IAI47_01235 0.58 +0.7 265,314 + IAI47_01235 0.60 -0.9 265,314 + IAI47_01235 0.60 +0.7 265,314 + IAI47_01235 0.60 -0.5 265,314 + IAI47_01235 0.60 +0.7 265,314 + IAI47_01235 0.60 +1.0 265,315 - IAI47_01235 0.60 -1.9 265,341 + IAI47_01235 0.61 +1.0 265,415 + IAI47_01235 0.66 +1.8 265,415 + IAI47_01235 0.66 +1.9 265,415 + IAI47_01235 0.66 -0.0 265,415 + IAI47_01235 0.66 +1.0 265,415 + IAI47_01235 0.66 +2.5 265,416 - IAI47_01235 0.66 +0.3 265,416 - IAI47_01235 0.66 +0.1 265,416 - IAI47_01235 0.66 +0.8 265,416 - IAI47_01235 0.66 +1.5 265,441 + IAI47_01235 0.67 +0.6 265,441 + IAI47_01235 0.67 +1.1 265,442 - IAI47_01235 0.67 -0.6 265,460 + IAI47_01235 0.68 -0.4 265,460 + IAI47_01235 0.68 -0.1 265,460 + IAI47_01235 0.68 +1.0 265,460 + IAI47_01235 0.68 +1.1 265,460 + IAI47_01235 0.68 -2.0 265,460 + IAI47_01235 0.68 -0.2 265,461 - IAI47_01235 0.68 -0.2 265,461 - IAI47_01235 0.68 -1.9 265,461 - IAI47_01235 0.68 +0.2 265,476 + IAI47_01235 0.69 -0.1 265,673 - IAI47_01235 0.81 +0.4 265,673 - IAI47_01235 0.81 +0.1 265,751 + IAI47_01235 0.85 +0.6 265,881 + -1.5 265,881 + +0.3 265,882 - +0.8 265,882 - -0.8 265,882 - +0.6 265,929 + -1.7 265,929 + -0.3 265,929 + -0.3 265,929 + +0.6 265,930 - -0.3 265,930 - +0.1 265,930 - +4.4 266,014 + -2.7 266,014 + -0.1 266,015 - -2.5 266,036 + -0.7 266,037 - +0.8 266,037 - +0.3 266,056 + +0.9 266,110 - -0.7 266,183 + +1.0 266,261 + IAI47_01240 0.13 +0.6 266,261 + IAI47_01240 0.13 +2.6 266,372 + IAI47_01240 0.19 -2.7 266,372 + IAI47_01240 0.19 -0.7 266,405 + IAI47_01240 0.20 +0.7 266,466 - IAI47_01240 0.23 -0.9 266,485 + IAI47_01240 0.24 -2.3 266,534 + IAI47_01240 0.26 -1.2 266,534 + IAI47_01240 0.26 +0.9 266,534 + IAI47_01240 0.26 -0.8 266,535 - IAI47_01240 0.27 -1.2 266,606 + IAI47_01240 0.30 -1.0 266,606 + IAI47_01240 0.30 +0.6 266,607 - IAI47_01240 0.30 -1.8 266,607 - IAI47_01240 0.30 -0.2 266,752 + IAI47_01240 0.37 -2.1 267,053 - IAI47_01240 0.52 -1.0 267,113 + IAI47_01240 0.55 +0.8 267,113 + IAI47_01240 0.55 -1.5 267,114 - IAI47_01240 0.55 +2.8 267,114 - IAI47_01240 0.55 +0.6 267,332 + IAI47_01240 0.65 -0.3 267,332 + IAI47_01240 0.65 -2.6 267,410 + IAI47_01240 0.69 +0.6 267,410 + IAI47_01240 0.69 -2.5 267,411 - IAI47_01240 0.69 -0.7 267,507 + IAI47_01240 0.74 -0.3 267,507 + IAI47_01240 0.74 -2.9 267,686 + IAI47_01240 0.83 +0.5 267,729 - IAI47_01240 0.85 -1.8 267,729 - IAI47_01240 0.85 +1.3 267,729 - IAI47_01240 0.85 +0.5 267,762 - IAI47_01240 0.86 +1.1 267,786 + IAI47_01240 0.88 -0.9 267,787 - IAI47_01240 0.88 +0.7 267,787 - IAI47_01240 0.88 +0.6 267,806 + IAI47_01240 0.89 +0.0 267,806 + IAI47_01240 0.89 +2.6 267,806 + IAI47_01240 0.89 -0.9 267,806 + IAI47_01240 0.89 -0.5 267,807 - IAI47_01240 0.89 -0.0 267,807 - IAI47_01240 0.89 -1.1 267,807 - IAI47_01240 0.89 +0.7 267,807 - IAI47_01240 0.89 -0.1 267,912 + +0.1 267,912 + +0.9 267,913 - +0.0 267,960 + -2.2 267,960 + +0.9 267,961 - +0.2 267,961 - +1.6 268,018 + +0.0 268,018 + +1.3 268,019 - -0.4 268,019 - -0.1 268,061 + +0.6 268,061 + -0.2 268,062 - -1.2 268,062 - -0.3 268,092 + -1.4 268,092 + +0.8 268,092 + -1.6 268,092 + +0.9 268,093 - +0.6 268,093 - -1.5 268,093 - +0.3 268,093 - -1.8 268,093 - -1.3 268,114 + IAI47_01245 0.11 +2.0 268,114 + IAI47_01245 0.11 -0.0 268,114 + IAI47_01245 0.11 +2.4 268,114 + IAI47_01245 0.11 +0.2 268,115 - IAI47_01245 0.11 +1.4 268,115 - IAI47_01245 0.11 -1.0 268,115 - IAI47_01245 0.11 -0.2 268,125 + IAI47_01245 0.13 +1.4 268,125 + IAI47_01245 0.13 -0.3 268,125 + IAI47_01245 0.13 -0.1 268,125 + IAI47_01245 0.13 +2.0 268,125 + IAI47_01245 0.13 +1.6 268,126 - IAI47_01245 0.13 +0.7 268,126 - IAI47_01245 0.13 -0.3 268,126 - IAI47_01245 0.13 -0.6 268,126 - IAI47_01245 0.13 -1.3 268,128 + IAI47_01245 0.14 +0.3 268,128 + IAI47_01245 0.14 +0.9 268,128 + IAI47_01245 0.14 -0.7 268,128 + IAI47_01245 0.14 +0.7 268,128 + IAI47_01245 0.14 +0.0 268,128 + IAI47_01245 0.14 +1.7 268,128 + IAI47_01245 0.14 -1.5 268,129 - IAI47_01245 0.14 -1.0 268,129 - IAI47_01245 0.14 -2.7 268,129 - IAI47_01245 0.14 +1.4 268,241 - IAI47_01245 0.34 -0.5 268,241 - IAI47_01245 0.34 -1.0 268,241 - IAI47_01245 0.34 -2.4 268,279 + IAI47_01245 0.40 +1.5 268,279 + IAI47_01245 0.40 +0.6 268,279 + IAI47_01245 0.40 +0.3 268,279 + IAI47_01245 0.40 +0.1 268,279 + IAI47_01245 0.40 +0.6 268,279 + IAI47_01245 0.40 +0.9 268,279 + IAI47_01245 0.40 +1.9 268,280 - IAI47_01245 0.40 +1.0 268,280 - IAI47_01245 0.40 +1.2 268,280 - IAI47_01245 0.40 -0.7 268,282 - IAI47_01245 0.41 +0.7 268,444 - IAI47_01245 0.69 -0.6 268,596 + +0.1 268,596 + -1.2 268,597 - +0.3 268,615 + -0.4 268,615 + +2.1 268,615 + +0.1 268,615 + +0.8 268,615 + -1.0 268,615 + -0.0 268,615 + +0.7 268,615 + +1.8 268,615 + -1.1 268,615 + -1.1 268,616 - +2.0 268,616 - -0.5 268,616 - +2.1 268,616 - +0.3 268,616 - +0.7 268,616 - +1.1 268,624 + +0.1 268,624 + -0.1 268,625 - -1.0 268,625 - -0.3 268,625 - -0.7 268,748 + +1.5 268,748 + -1.5 268,749 - +0.8 268,812 + -2.1 268,812 + +1.7 268,812 + -1.1 268,812 + -1.5 268,812 + +1.3 268,812 + -1.4 268,812 + +0.5 268,813 - +0.2 268,857 + +0.3 268,858 - +1.7 268,975 + IAI47_01250 0.13 -1.0 269,008 + IAI47_01250 0.14 -0.4
Or see this region's nucleotide sequence