Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08565

Experiment: McCas_formate_complete phosphite 25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete phosphite 25 mM
1,575,773	+		MMJJ_RS08555	0.73	-0.1
1,575,777	-		MMJJ_RS08555	0.73	+3.8
1,575,777	-		MMJJ_RS08555	0.73	-1.8
1,575,778	+		MMJJ_RS08555	0.73	-0.6
1,575,778	+		MMJJ_RS08555	0.73	-1.4
1,575,778	+		MMJJ_RS08555	0.73	-1.9
1,575,840	-		MMJJ_RS08555	0.78	+0.7
1,575,840	-		MMJJ_RS08555	0.78	+0.1
1,575,841	+		MMJJ_RS08555	0.78	-0.3
1,575,841	+		MMJJ_RS08555	0.78	-0.1
1,575,844	+		MMJJ_RS08555	0.79	+0.2
1,575,844	+		MMJJ_RS08555	0.79	-3.8
1,575,854	+		MMJJ_RS08555	0.80	-1.4
1,575,858	+		MMJJ_RS08555	0.80	-2.6
1,575,871	+		MMJJ_RS08555	0.81	-1.1
1,575,902	-		MMJJ_RS08555	0.84	+0.2
1,575,931	+		MMJJ_RS08555	0.86	+1.0
1,575,931	+		MMJJ_RS08555	0.86	-2.9
1,575,971	-		MMJJ_RS08555	0.89	-2.3
1,575,976	-		MMJJ_RS08555	0.90	+0.4
1,575,976	-		MMJJ_RS08555	0.90	+0.2
1,576,132	-				+0.3
1,576,133	+				+0.9
1,576,145	-				+0.4
1,576,149	+				+1.7
1,576,149	+				-0.1
1,576,161	+				+2.0
1,576,167	+				+0.3
1,576,180	-				+2.5
1,576,181	+				+1.0
1,576,420	-				-0.3
1,576,420	-		MMJJ_RS08560	0.48	-0.1
1,576,421	+		MMJJ_RS08560	0.48	+0.2
1,576,438	-		MMJJ_RS08560	0.51	-0.3
1,576,439	+		MMJJ_RS08560	0.51	+0.7
1,576,439	+		MMJJ_RS08560	0.51	+1.1
1,576,441	-		MMJJ_RS08560	0.52	+0.2
1,576,442	+		MMJJ_RS08560	0.52	+0.1
1,576,515	-		MMJJ_RS08560	0.65	-0.8
1,576,515	-		MMJJ_RS08560	0.65	-1.9
1,576,515	-		MMJJ_RS08560	0.65	-1.6
1,576,519	-		MMJJ_RS08560	0.66	-0.4
1,576,519	-		MMJJ_RS08560	0.66	-1.1
1,576,519	-		MMJJ_RS08560	0.66	+1.3
1,576,519	-		MMJJ_RS08560	0.66	-1.4
1,576,519	-		MMJJ_RS08560	0.66	+0.4
1,576,520	+		MMJJ_RS08560	0.66	+0.6
1,576,520	+		MMJJ_RS08560	0.66	+0.1
1,576,520	+		MMJJ_RS08560	0.66	-0.3
1,576,558	-		MMJJ_RS08560	0.73	+0.1
1,576,678	-				+0.3
1,576,697	-				-2.6
1,576,710	-				-1.1
1,576,763	-				+2.1
1,576,792	-				+2.5
1,576,792	-				+1.2
1,576,793	+				+0.3
1,576,929	+				-0.9
1,577,018	+		MMJJ_RS08565	0.14	-0.3
1,577,157	-		MMJJ_RS08565	0.22	-3.3
1,577,230	-		MMJJ_RS08565	0.26	-4.0
1,577,238	+		MMJJ_RS08565	0.26	+0.6
1,577,238	+		MMJJ_RS08565	0.26	-1.8
1,577,244	+		MMJJ_RS08565	0.26	+0.5
1,577,257	-		MMJJ_RS08565	0.27	-0.1
1,577,257	-		MMJJ_RS08565	0.27	-1.6
1,577,257	-		MMJJ_RS08565	0.27	-1.0
1,577,368	+		MMJJ_RS08565	0.33	-1.6
1,577,383	-		MMJJ_RS08565	0.34	-0.7
1,577,384	+		MMJJ_RS08565	0.34	-1.1
1,577,396	+		MMJJ_RS08565	0.35	-1.3
1,577,396	+		MMJJ_RS08565	0.35	-2.8
1,577,411	-		MMJJ_RS08565	0.35	+2.4
1,577,411	-		MMJJ_RS08565	0.35	+0.6
1,577,476	-		MMJJ_RS08565	0.39	-0.0
1,577,531	+		MMJJ_RS08565	0.42	+1.3
1,577,555	-		MMJJ_RS08565	0.43	-2.8
1,577,556	+		MMJJ_RS08565	0.43	+1.8
1,577,661	+		MMJJ_RS08565	0.49	+0.9
1,577,661	+		MMJJ_RS08565	0.49	-0.2
1,577,687	+		MMJJ_RS08565	0.50	-1.9
1,577,738	-		MMJJ_RS08565	0.53	+0.1
1,577,783	-		MMJJ_RS08565	0.56	-0.3
1,577,787	+		MMJJ_RS08565	0.56	-0.5
1,577,787	+		MMJJ_RS08565	0.56	+1.4
1,577,800	-		MMJJ_RS08565	0.57	-0.1
1,577,890	+		MMJJ_RS08565	0.61	-0.3
1,577,890	+		MMJJ_RS08565	0.61	+2.3
1,577,891	-		MMJJ_RS08565	0.61	-2.1
1,577,891	-		MMJJ_RS08565	0.61	-1.6
1,577,891	-		MMJJ_RS08565	0.61	-0.0
1,577,892	+		MMJJ_RS08565	0.62	+1.1
1,577,892	+		MMJJ_RS08565	0.62	+0.4
1,577,893	-		MMJJ_RS08565	0.62	+0.7
1,577,893	-		MMJJ_RS08565	0.62	+0.2
1,577,893	-		MMJJ_RS08565	0.62	-0.8
1,577,947	-		MMJJ_RS08565	0.64	+0.0
1,577,948	+		MMJJ_RS08565	0.65	+0.7
1,577,951	-		MMJJ_RS08565	0.65	+0.3
1,577,952	+		MMJJ_RS08565	0.65	+1.5
1,577,957	-		MMJJ_RS08565	0.65	-1.9
1,577,958	+		MMJJ_RS08565	0.65	+1.5
1,577,966	-		MMJJ_RS08565	0.66	-0.3
1,577,966	-		MMJJ_RS08565	0.66	+0.8
1,577,971	+		MMJJ_RS08565	0.66	-3.4
1,577,971	+		MMJJ_RS08565	0.66	-0.0
1,577,971	+		MMJJ_RS08565	0.66	-1.5
1,577,972	-		MMJJ_RS08565	0.66	+2.7
1,578,002	+		MMJJ_RS08565	0.67	+0.3
1,578,028	-		MMJJ_RS08565	0.69	-0.0
1,578,028	-		MMJJ_RS08565	0.69	+1.1
1,578,036	+		MMJJ_RS08565	0.69	+0.7
1,578,036	+		MMJJ_RS08565	0.69	-3.3
1,578,037	-		MMJJ_RS08565	0.69	-1.6
1,578,041	-		MMJJ_RS08565	0.70	-1.3
1,578,041	-		MMJJ_RS08565	0.70	+1.1
1,578,041	-		MMJJ_RS08565	0.70	+1.7
1,578,042	+		MMJJ_RS08565	0.70	+1.7
1,578,045	-		MMJJ_RS08565	0.70	+2.8
1,578,046	+		MMJJ_RS08565	0.70	-0.6
1,578,059	-		MMJJ_RS08565	0.71	+0.1
1,578,059	-		MMJJ_RS08565	0.71	+1.5
1,578,061	-		MMJJ_RS08565	0.71	+0.7
1,578,062	+		MMJJ_RS08565	0.71	+0.5
1,578,078	-		MMJJ_RS08565	0.72	-0.8
1,578,078	-		MMJJ_RS08565	0.72	-0.0
1,578,079	+		MMJJ_RS08565	0.72	-0.9
1,578,079	+		MMJJ_RS08565	0.72	+1.2
1,578,081	+		MMJJ_RS08565	0.72	+1.9
1,578,081	+		MMJJ_RS08565	0.72	-2.3
1,578,081	+		MMJJ_RS08565	0.72	+0.9
1,578,136	-		MMJJ_RS08565	0.75	-0.7
1,578,177	-		MMJJ_RS08565	0.77	-1.5
1,578,177	-		MMJJ_RS08565	0.77	+0.4
1,578,177	-		MMJJ_RS08565	0.77	-0.8
1,578,178	+		MMJJ_RS08565	0.77	+0.1
1,578,178	+		MMJJ_RS08565	0.77	-1.0
1,578,178	+		MMJJ_RS08565	0.77	+2.8
1,578,178	+		MMJJ_RS08565	0.77	-0.8
1,578,179	-		MMJJ_RS08565	0.77	-0.2
1,578,179	-		MMJJ_RS08565	0.77	+1.2
1,578,179	-		MMJJ_RS08565	0.77	+1.1
1,578,179	-		MMJJ_RS08565	0.77	+1.4
1,578,179	-		MMJJ_RS08565	0.77	-0.6
1,578,206	+		MMJJ_RS08565	0.79	-2.0
1,578,210	-		MMJJ_RS08565	0.79	+2.2
1,578,211	+		MMJJ_RS08565	0.79	+0.1
1,578,211	+		MMJJ_RS08565	0.79	-0.8
1,578,211	+		MMJJ_RS08565	0.79	-0.1
1,578,211	+		MMJJ_RS08565	0.79	+0.4
1,578,254	-		MMJJ_RS08565	0.81	+2.1
1,578,255	+		MMJJ_RS08565	0.81	+0.0
1,578,341	+		MMJJ_RS08565	0.86	-1.3
1,578,352	-		MMJJ_RS08565	0.86	-1.3
1,578,385	-		MMJJ_RS08565	0.88	+0.3
1,578,387	-		MMJJ_RS08565	0.88	-0.3
1,578,438	+				-0.1
1,578,453	+				-0.2
1,578,455	+				-0.4
1,578,459	+				+3.2
1,578,459	+				-0.6
1,578,497	+				+1.4
1,578,497	+				+1.5
1,578,500	+				-0.3
1,578,510	+				+0.7
1,578,513	-				+2.2
1,578,513	-				+1.0
1,578,514	+				-1.4
1,578,536	-				+3.9
1,578,536	-				+1.5
1,578,545	+				+0.8
1,578,569	+				+0.2
1,578,645	+				-3.1
1,578,654	-				+0.5
1,578,658	-				+1.0
1,578,663	-				+0.1
1,578,668	+				+0.4
1,578,672	+				-0.8
1,578,676	+				+0.7
1,578,688	+				-0.2
1,578,688	+				+1.7
1,578,692	+				-0.2
1,578,737	-				+0.1
1,578,750	-				-0.3
1,578,751	+				-0.1
1,578,764	-				+0.4
1,578,765	+				+0.3
1,578,765	+				+2.5
1,578,777	+				+0.7
1,578,779	-				-0.6
1,578,830	-		MMJJ_RS08570	0.11	+0.3
1,578,831	+		MMJJ_RS08570	0.11	+0.9
1,578,857	-		MMJJ_RS08570	0.14	+2.5
1,578,860	-		MMJJ_RS08570	0.14	+0.4
1,578,861	+		MMJJ_RS08570	0.14	-0.3
1,578,914	-		MMJJ_RS08570	0.20	+2.7
1,578,915	+		MMJJ_RS08570	0.20	+0.9
1,578,976	-		MMJJ_RS08570	0.26	+0.2
1,578,976	-		MMJJ_RS08570	0.26	+1.2
1,579,182	+		MMJJ_RS08570	0.48	-1.9
1,579,310	+		MMJJ_RS08570	0.62	-0.2
1,579,385	+		MMJJ_RS08570	0.70	+2.2
1,579,428	-		MMJJ_RS08570	0.74	+0.9
1,579,429	+		MMJJ_RS08570	0.74	+0.6
1,579,433	-		MMJJ_RS08570	0.75	+1.1
1,579,433	-		MMJJ_RS08570	0.75	+1.2
1,579,450	-		MMJJ_RS08570	0.76	-2.1
1,579,451	+		MMJJ_RS08570	0.77	-3.3
1,579,451	+		MMJJ_RS08570	0.77	-1.3
1,579,451	+		MMJJ_RS08570	0.77	+0.3
1,579,526	-		MMJJ_RS08570	0.84	-2.1
1,579,527	+		MMJJ_RS08570	0.85	+1.0
1,579,527	+		MMJJ_RS08570	0.85	-2.1
1,579,553	-		MMJJ_RS08570	0.87	-0.6
1,579,553	-		MMJJ_RS08570	0.87	-1.3
1,579,553	-		MMJJ_RS08570	0.87	-0.0
1,579,554	+		MMJJ_RS08570	0.87	+1.4
1,579,554	+		MMJJ_RS08570	0.87	-0.1
1,579,557	-		MMJJ_RS08570	0.88	+1.9
1,579,557	-		MMJJ_RS08570	0.88	+0.1
1,579,557	-		MMJJ_RS08570	0.88	+1.6
1,579,557	-		MMJJ_RS08570	0.88	+1.8
1,579,558	+		MMJJ_RS08570	0.88	-0.8
1,579,558	+		MMJJ_RS08570	0.88	+0.7
1,579,558	+		MMJJ_RS08570	0.88	+1.3
1,579,558	+		MMJJ_RS08570	0.88	-0.0