Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03080

Experiment: McCas_formate_complete phosphite 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03075 and MMJJ_RS03080 are separated by 141 nucleotidesMMJJ_RS03080 and MMJJ_RS03085 are separated by 29 nucleotidesMMJJ_RS03085 and MMJJ_RS03090 are separated by 207 nucleotides MMJJ_RS03075: MMJJ_RS03075 - sodium-dependent transporter, at 577,042 to 578,553 _RS03075 MMJJ_RS03080: MMJJ_RS03080 - carbohydrate kinase family protein, at 578,695 to 579,603 _RS03080 MMJJ_RS03085: MMJJ_RS03085 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 579,633 to 580,349 _RS03085 MMJJ_RS03090: MMJJ_RS03090 - ECF transporter S component, at 580,557 to 581,153 _RS03090 Position (kb) 578 579 580Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 577.697 kb on + strand, within MMJJ_RS03075at 577.802 kb on + strand, within MMJJ_RS03075at 577.802 kb on + strand, within MMJJ_RS03075at 577.816 kb on + strand, within MMJJ_RS03075at 577.823 kb on - strand, within MMJJ_RS03075at 577.823 kb on - strand, within MMJJ_RS03075at 577.846 kb on + strand, within MMJJ_RS03075at 577.937 kb on - strand, within MMJJ_RS03075at 577.940 kb on - strand, within MMJJ_RS03075at 577.941 kb on + strand, within MMJJ_RS03075at 577.954 kb on + strand, within MMJJ_RS03075at 577.971 kb on - strand, within MMJJ_RS03075at 578.021 kb on + strand, within MMJJ_RS03075at 578.052 kb on - strand, within MMJJ_RS03075at 578.065 kb on - strand, within MMJJ_RS03075at 578.076 kb on + strand, within MMJJ_RS03075at 578.076 kb on + strand, within MMJJ_RS03075at 578.080 kb on - strand, within MMJJ_RS03075at 578.080 kb on - strand, within MMJJ_RS03075at 578.225 kb on - strand, within MMJJ_RS03075at 578.225 kb on - strand, within MMJJ_RS03075at 578.231 kb on + strand, within MMJJ_RS03075at 578.245 kb on + strand, within MMJJ_RS03075at 578.245 kb on + strand, within MMJJ_RS03075at 578.255 kb on - strand, within MMJJ_RS03075at 578.258 kb on - strand, within MMJJ_RS03075at 578.265 kb on - strand, within MMJJ_RS03075at 578.269 kb on - strand, within MMJJ_RS03075at 578.285 kb on + strand, within MMJJ_RS03075at 578.285 kb on + strand, within MMJJ_RS03075at 578.408 kb on + strandat 578.462 kb on - strandat 578.477 kb on + strandat 578.479 kb on + strandat 578.600 kb on - strandat 578.607 kb on - strandat 578.607 kb on - strandat 578.608 kb on + strandat 578.609 kb on - strandat 578.610 kb on + strandat 578.611 kb on - strandat 578.612 kb on + strandat 578.666 kb on - strandat 578.666 kb on - strandat 578.666 kb on - strandat 578.667 kb on + strandat 578.667 kb on + strandat 578.674 kb on + strandat 578.697 kb on + strandat 578.698 kb on - strandat 578.699 kb on + strandat 578.716 kb on + strandat 578.774 kb on + strandat 578.774 kb on + strandat 578.788 kb on - strand, within MMJJ_RS03080at 578.788 kb on - strand, within MMJJ_RS03080at 578.789 kb on + strand, within MMJJ_RS03080at 578.789 kb on + strand, within MMJJ_RS03080at 578.833 kb on - strand, within MMJJ_RS03080at 578.837 kb on - strand, within MMJJ_RS03080at 578.837 kb on - strand, within MMJJ_RS03080at 578.902 kb on - strand, within MMJJ_RS03080at 578.916 kb on - strand, within MMJJ_RS03080at 578.917 kb on + strand, within MMJJ_RS03080at 578.917 kb on + strand, within MMJJ_RS03080at 578.936 kb on - strand, within MMJJ_RS03080at 578.938 kb on - strand, within MMJJ_RS03080at 578.938 kb on - strand, within MMJJ_RS03080at 578.938 kb on - strand, within MMJJ_RS03080at 578.938 kb on - strand, within MMJJ_RS03080at 578.939 kb on + strand, within MMJJ_RS03080at 578.939 kb on + strand, within MMJJ_RS03080at 578.966 kb on + strand, within MMJJ_RS03080at 578.971 kb on - strand, within MMJJ_RS03080at 578.989 kb on + strand, within MMJJ_RS03080at 579.096 kb on - strand, within MMJJ_RS03080at 579.101 kb on - strand, within MMJJ_RS03080at 579.101 kb on - strand, within MMJJ_RS03080at 579.102 kb on + strand, within MMJJ_RS03080at 579.102 kb on + strand, within MMJJ_RS03080at 579.103 kb on - strand, within MMJJ_RS03080at 579.109 kb on - strand, within MMJJ_RS03080at 579.110 kb on + strand, within MMJJ_RS03080at 579.205 kb on - strand, within MMJJ_RS03080at 579.424 kb on - strand, within MMJJ_RS03080at 579.424 kb on - strand, within MMJJ_RS03080at 579.468 kb on - strand, within MMJJ_RS03080at 579.550 kb on - strandat 579.550 kb on - strandat 579.552 kb on - strandat 579.552 kb on - strandat 579.552 kb on - strandat 579.553 kb on + strandat 579.553 kb on + strandat 579.554 kb on - strandat 579.554 kb on - strandat 579.554 kb on - strandat 579.555 kb on + strandat 579.555 kb on + strandat 579.555 kb on + strandat 579.619 kb on - strandat 579.634 kb on - strandat 580.402 kb on - strandat 580.434 kb on - strandat 580.435 kb on + strandat 580.436 kb on - strandat 580.436 kb on - strandat 580.437 kb on + strandat 580.437 kb on + strandat 580.437 kb on + strandat 580.437 kb on + strandat 580.437 kb on + strandat 580.437 kb on + strandat 580.437 kb on + strandat 580.442 kb on - strandat 580.442 kb on - strandat 580.442 kb on - strandat 580.446 kb on - strandat 580.482 kb on + strandat 580.489 kb on - strandat 580.510 kb on + strandat 580.541 kb on - strandat 580.559 kb on + strandat 580.588 kb on + strandat 580.588 kb on + strandat 580.588 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete phosphite 25 mM
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577,697 + MMJJ_RS03075 0.43 +0.2
577,802 + MMJJ_RS03075 0.50 +0.3
577,802 + MMJJ_RS03075 0.50 +1.1
577,816 + MMJJ_RS03075 0.51 +1.4
577,823 - MMJJ_RS03075 0.52 -0.4
577,823 - MMJJ_RS03075 0.52 +0.1
577,846 + MMJJ_RS03075 0.53 -0.4
577,937 - MMJJ_RS03075 0.59 -3.4
577,940 - MMJJ_RS03075 0.59 -0.6
577,941 + MMJJ_RS03075 0.59 +1.3
577,954 + MMJJ_RS03075 0.60 -0.2
577,971 - MMJJ_RS03075 0.61 -1.4
578,021 + MMJJ_RS03075 0.65 -0.6
578,052 - MMJJ_RS03075 0.67 -0.0
578,065 - MMJJ_RS03075 0.68 -1.5
578,076 + MMJJ_RS03075 0.68 +0.0
578,076 + MMJJ_RS03075 0.68 -1.6
578,080 - MMJJ_RS03075 0.69 +0.2
578,080 - MMJJ_RS03075 0.69 -1.4
578,225 - MMJJ_RS03075 0.78 -0.3
578,225 - MMJJ_RS03075 0.78 -0.9
578,231 + MMJJ_RS03075 0.79 -2.9
578,245 + MMJJ_RS03075 0.80 +0.6
578,245 + MMJJ_RS03075 0.80 -2.7
578,255 - MMJJ_RS03075 0.80 -3.4
578,258 - MMJJ_RS03075 0.80 +2.4
578,265 - MMJJ_RS03075 0.81 -2.5
578,269 - MMJJ_RS03075 0.81 -2.1
578,285 + MMJJ_RS03075 0.82 +1.5
578,285 + MMJJ_RS03075 0.82 +2.1
578,408 + -0.9
578,462 - +0.3
578,477 + -3.3
578,479 + +0.7
578,600 - -0.4
578,607 - +0.7
578,607 - -2.9
578,608 + -0.4
578,609 - -1.1
578,610 + -1.4
578,611 - +2.2
578,612 + -1.9
578,666 - +0.2
578,666 - -1.9
578,666 - +0.2
578,667 + +1.1
578,667 + -0.6
578,674 + +0.3
578,697 + +0.2
578,698 - -0.3
578,699 + -0.7
578,716 + -1.4
578,774 + -0.4
578,774 + -4.6
578,788 - MMJJ_RS03080 0.10 -0.1
578,788 - MMJJ_RS03080 0.10 +1.1
578,789 + MMJJ_RS03080 0.10 -1.9
578,789 + MMJJ_RS03080 0.10 -1.4
578,833 - MMJJ_RS03080 0.15 -0.4
578,837 - MMJJ_RS03080 0.16 -0.8
578,837 - MMJJ_RS03080 0.16 -2.1
578,902 - MMJJ_RS03080 0.23 -1.6
578,916 - MMJJ_RS03080 0.24 -4.3
578,917 + MMJJ_RS03080 0.24 -2.5
578,917 + MMJJ_RS03080 0.24 -0.2
578,936 - MMJJ_RS03080 0.27 +0.6
578,938 - MMJJ_RS03080 0.27 -1.0
578,938 - MMJJ_RS03080 0.27 -0.7
578,938 - MMJJ_RS03080 0.27 -4.0
578,938 - MMJJ_RS03080 0.27 -3.4
578,939 + MMJJ_RS03080 0.27 -1.3
578,939 + MMJJ_RS03080 0.27 -2.3
578,966 + MMJJ_RS03080 0.30 -0.7
578,971 - MMJJ_RS03080 0.30 +0.6
578,989 + MMJJ_RS03080 0.32 -2.9
579,096 - MMJJ_RS03080 0.44 -2.2
579,101 - MMJJ_RS03080 0.45 +2.2
579,101 - MMJJ_RS03080 0.45 -2.1
579,102 + MMJJ_RS03080 0.45 -1.5
579,102 + MMJJ_RS03080 0.45 -0.4
579,103 - MMJJ_RS03080 0.45 -3.3
579,109 - MMJJ_RS03080 0.46 -2.8
579,110 + MMJJ_RS03080 0.46 +1.0
579,205 - MMJJ_RS03080 0.56 -2.4
579,424 - MMJJ_RS03080 0.80 -2.4
579,424 - MMJJ_RS03080 0.80 -4.5
579,468 - MMJJ_RS03080 0.85 -0.7
579,550 - -0.4
579,550 - -3.2
579,552 - -0.6
579,552 - +1.2
579,552 - -2.3
579,553 + -1.4
579,553 + -1.4
579,554 - -2.1
579,554 - -1.0
579,554 - -0.1
579,555 + -1.5
579,555 + -0.2
579,555 + -1.4
579,619 - +2.0
579,634 - -2.4
580,402 - +0.7
580,434 - +0.7
580,435 + -1.3
580,436 - -1.8
580,436 - -3.7
580,437 + -3.1
580,437 + -3.4
580,437 + -1.9
580,437 + -1.7
580,437 + -0.9
580,437 + -3.2
580,437 + -1.3
580,442 - -1.6
580,442 - -0.3
580,442 - +0.7
580,446 - +1.4
580,482 + -1.1
580,489 - +0.9
580,510 + -0.5
580,541 - +1.2
580,559 + +0.7
580,588 + -0.3
580,588 + +0.8
580,588 + -1.1

Or see this region's nucleotide sequence