Strain Fitness in Pantoea sp. MT58 around IAI47_20895

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20890 and IAI47_20895 are separated by 619 nucleotidesIAI47_20895 and IAI47_20900 are separated by 266 nucleotides IAI47_20890: IAI47_20890 - hypothetical protein, at 422,985 to 423,758 _20890 IAI47_20895: IAI47_20895 - LacI family DNA-binding transcriptional regulator, at 424,378 to 425,448 _20895 IAI47_20900: IAI47_20900 - maltoporin, at 425,715 to 426,977 _20900 Position (kb) 424 425 426Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 423.419 kb on + strand, within IAI47_20890at 423.419 kb on + strand, within IAI47_20890at 423.419 kb on + strand, within IAI47_20890at 423.419 kb on + strand, within IAI47_20890at 423.419 kb on + strand, within IAI47_20890at 423.420 kb on - strand, within IAI47_20890at 423.420 kb on - strand, within IAI47_20890at 423.420 kb on - strand, within IAI47_20890at 423.422 kb on - strand, within IAI47_20890at 423.521 kb on + strand, within IAI47_20890at 423.521 kb on + strand, within IAI47_20890at 423.522 kb on - strand, within IAI47_20890at 423.522 kb on - strand, within IAI47_20890at 423.524 kb on + strand, within IAI47_20890at 423.524 kb on + strand, within IAI47_20890at 423.525 kb on - strand, within IAI47_20890at 423.525 kb on - strand, within IAI47_20890at 423.545 kb on + strand, within IAI47_20890at 423.585 kb on - strand, within IAI47_20890at 423.585 kb on - strand, within IAI47_20890at 423.601 kb on + strand, within IAI47_20890at 423.601 kb on + strand, within IAI47_20890at 423.601 kb on + strand, within IAI47_20890at 423.601 kb on + strand, within IAI47_20890at 423.698 kb on + strandat 423.698 kb on + strandat 423.699 kb on - strandat 423.699 kb on - strandat 423.699 kb on - strandat 423.707 kb on + strandat 423.707 kb on + strandat 423.708 kb on - strandat 423.708 kb on - strandat 423.708 kb on - strandat 423.708 kb on - strandat 423.708 kb on - strandat 423.715 kb on + strandat 423.716 kb on - strandat 423.716 kb on - strandat 423.772 kb on + strandat 423.773 kb on - strandat 423.778 kb on + strandat 423.778 kb on + strandat 423.779 kb on - strandat 423.793 kb on + strandat 423.793 kb on + strandat 423.793 kb on + strandat 423.793 kb on + strandat 423.830 kb on + strandat 423.832 kb on + strandat 423.833 kb on - strandat 423.833 kb on - strandat 423.890 kb on + strandat 423.890 kb on + strandat 423.890 kb on + strandat 423.890 kb on + strandat 423.891 kb on - strandat 423.891 kb on - strandat 423.891 kb on - strandat 423.891 kb on - strandat 423.891 kb on - strandat 423.891 kb on - strandat 423.891 kb on - strandat 423.893 kb on + strandat 423.893 kb on + strandat 423.893 kb on + strandat 423.893 kb on + strandat 423.893 kb on + strandat 423.893 kb on + strandat 423.893 kb on + strandat 423.893 kb on + strandat 423.893 kb on + strandat 423.894 kb on - strandat 423.894 kb on - strandat 423.894 kb on - strandat 423.894 kb on - strandat 423.894 kb on - strandat 423.894 kb on - strandat 423.969 kb on - strandat 424.005 kb on - strandat 424.005 kb on - strandat 424.017 kb on + strandat 424.017 kb on + strandat 424.017 kb on + strandat 424.045 kb on + strandat 424.045 kb on + strandat 424.045 kb on + strandat 424.046 kb on - strandat 424.046 kb on - strandat 424.046 kb on - strandat 424.046 kb on - strandat 424.048 kb on + strandat 424.048 kb on + strandat 424.048 kb on + strandat 424.048 kb on + strandat 424.048 kb on + strandat 424.048 kb on + strandat 424.048 kb on + strandat 424.049 kb on - strandat 424.049 kb on - strandat 424.049 kb on - strandat 424.049 kb on - strandat 424.049 kb on - strandat 424.049 kb on - strandat 424.049 kb on - strandat 424.049 kb on - strandat 424.049 kb on - strandat 424.073 kb on + strandat 424.073 kb on + strandat 424.149 kb on + strandat 424.149 kb on + strandat 424.168 kb on + strandat 424.168 kb on + strandat 424.169 kb on - strandat 424.169 kb on - strandat 424.193 kb on + strandat 424.193 kb on + strandat 424.193 kb on + strandat 424.193 kb on + strandat 424.193 kb on + strandat 424.193 kb on + strandat 424.193 kb on + strandat 424.194 kb on - strandat 424.194 kb on - strandat 424.194 kb on - strandat 424.283 kb on - strandat 424.311 kb on + strandat 424.312 kb on - strandat 424.312 kb on - strandat 424.315 kb on + strandat 424.331 kb on + strandat 424.331 kb on + strandat 424.331 kb on + strandat 424.332 kb on - strandat 424.358 kb on + strandat 424.359 kb on - strandat 424.526 kb on - strand, within IAI47_20895at 424.552 kb on - strand, within IAI47_20895at 424.613 kb on + strand, within IAI47_20895at 424.613 kb on + strand, within IAI47_20895at 424.613 kb on + strand, within IAI47_20895at 424.613 kb on + strand, within IAI47_20895at 424.613 kb on + strand, within IAI47_20895at 424.613 kb on + strand, within IAI47_20895at 424.613 kb on + strand, within IAI47_20895at 424.613 kb on + strand, within IAI47_20895at 424.614 kb on - strand, within IAI47_20895at 424.614 kb on - strand, within IAI47_20895at 424.614 kb on - strand, within IAI47_20895at 424.614 kb on - strand, within IAI47_20895at 424.756 kb on + strand, within IAI47_20895at 424.756 kb on + strand, within IAI47_20895at 424.756 kb on + strand, within IAI47_20895at 424.757 kb on - strand, within IAI47_20895at 424.757 kb on - strand, within IAI47_20895at 424.766 kb on + strand, within IAI47_20895at 424.766 kb on + strand, within IAI47_20895at 424.766 kb on + strand, within IAI47_20895at 424.767 kb on - strand, within IAI47_20895at 424.821 kb on - strand, within IAI47_20895at 424.833 kb on + strand, within IAI47_20895at 424.919 kb on + strand, within IAI47_20895at 424.919 kb on + strand, within IAI47_20895at 424.919 kb on + strand, within IAI47_20895at 424.920 kb on - strand, within IAI47_20895at 424.920 kb on - strand, within IAI47_20895at 424.925 kb on + strand, within IAI47_20895at 424.926 kb on - strand, within IAI47_20895at 424.926 kb on - strand, within IAI47_20895at 424.926 kb on - strand, within IAI47_20895at 424.926 kb on - strand, within IAI47_20895at 424.985 kb on + strand, within IAI47_20895at 424.986 kb on - strand, within IAI47_20895at 425.014 kb on + strand, within IAI47_20895at 425.014 kb on + strand, within IAI47_20895at 425.014 kb on + strand, within IAI47_20895at 425.014 kb on + strand, within IAI47_20895at 425.014 kb on + strand, within IAI47_20895at 425.014 kb on + strand, within IAI47_20895at 425.015 kb on - strand, within IAI47_20895at 425.015 kb on - strand, within IAI47_20895at 425.015 kb on - strand, within IAI47_20895at 425.015 kb on - strand, within IAI47_20895at 425.015 kb on - strand, within IAI47_20895at 425.015 kb on - strand, within IAI47_20895at 425.082 kb on + strand, within IAI47_20895at 425.112 kb on + strand, within IAI47_20895at 425.112 kb on + strand, within IAI47_20895at 425.161 kb on + strand, within IAI47_20895at 425.295 kb on + strand, within IAI47_20895at 425.296 kb on - strand, within IAI47_20895at 425.303 kb on + strand, within IAI47_20895at 425.304 kb on - strand, within IAI47_20895at 425.304 kb on - strand, within IAI47_20895at 425.368 kb on - strandat 425.368 kb on - strandat 425.393 kb on + strandat 425.394 kb on - strandat 425.394 kb on - strandat 425.394 kb on - strandat 425.426 kb on - strandat 425.449 kb on - strandat 425.482 kb on + strandat 425.482 kb on + strandat 425.482 kb on + strandat 425.482 kb on + strandat 425.483 kb on - strandat 425.483 kb on - strandat 425.483 kb on - strandat 425.615 kb on + strandat 425.615 kb on + strandat 425.615 kb on + strandat 425.615 kb on + strandat 425.615 kb on + strandat 425.615 kb on + strandat 425.615 kb on + strandat 425.616 kb on - strandat 425.616 kb on - strandat 425.616 kb on - strandat 425.616 kb on - strandat 425.616 kb on - strandat 425.701 kb on + strandat 425.728 kb on + strandat 425.728 kb on + strandat 425.728 kb on + strandat 425.728 kb on + strandat 425.728 kb on + strandat 425.729 kb on - strandat 425.729 kb on - strandat 425.729 kb on - strandat 425.732 kb on + strandat 425.732 kb on + strandat 425.733 kb on - strandat 425.778 kb on + strandat 425.778 kb on + strandat 425.778 kb on + strandat 425.778 kb on + strandat 425.779 kb on - strandat 425.779 kb on - strandat 425.779 kb on - strandat 425.779 kb on - strandat 425.811 kb on + strandat 425.812 kb on - strandat 425.859 kb on + strand, within IAI47_20900at 425.904 kb on + strand, within IAI47_20900at 425.904 kb on + strand, within IAI47_20900at 425.905 kb on - strand, within IAI47_20900at 425.935 kb on - strand, within IAI47_20900at 425.958 kb on + strand, within IAI47_20900at 425.958 kb on + strand, within IAI47_20900at 425.958 kb on + strand, within IAI47_20900at 425.958 kb on + strand, within IAI47_20900at 426.061 kb on + strand, within IAI47_20900at 426.062 kb on - strand, within IAI47_20900at 426.114 kb on + strand, within IAI47_20900at 426.115 kb on - strand, within IAI47_20900at 426.117 kb on + strand, within IAI47_20900at 426.117 kb on + strand, within IAI47_20900at 426.117 kb on + strand, within IAI47_20900at 426.117 kb on + strand, within IAI47_20900at 426.118 kb on - strand, within IAI47_20900at 426.118 kb on - strand, within IAI47_20900at 426.118 kb on - strand, within IAI47_20900at 426.118 kb on - strand, within IAI47_20900at 426.146 kb on + strand, within IAI47_20900at 426.153 kb on + strand, within IAI47_20900at 426.153 kb on + strand, within IAI47_20900at 426.154 kb on - strand, within IAI47_20900at 426.161 kb on + strand, within IAI47_20900at 426.192 kb on + strand, within IAI47_20900at 426.193 kb on - strand, within IAI47_20900at 426.287 kb on + strand, within IAI47_20900at 426.287 kb on + strand, within IAI47_20900at 426.287 kb on + strand, within IAI47_20900at 426.287 kb on + strand, within IAI47_20900at 426.287 kb on + strand, within IAI47_20900at 426.287 kb on + strand, within IAI47_20900at 426.288 kb on - strand, within IAI47_20900at 426.288 kb on - strand, within IAI47_20900at 426.288 kb on - strand, within IAI47_20900at 426.288 kb on - strand, within IAI47_20900at 426.288 kb on - strand, within IAI47_20900at 426.288 kb on - strand, within IAI47_20900at 426.288 kb on - strand, within IAI47_20900at 426.291 kb on + strand, within IAI47_20900at 426.291 kb on + strand, within IAI47_20900at 426.292 kb on - strand, within IAI47_20900at 426.292 kb on - strand, within IAI47_20900at 426.292 kb on - strand, within IAI47_20900at 426.306 kb on + strand, within IAI47_20900at 426.357 kb on + strand, within IAI47_20900at 426.358 kb on - strand, within IAI47_20900at 426.358 kb on - strand, within IAI47_20900at 426.393 kb on + strand, within IAI47_20900at 426.393 kb on + strand, within IAI47_20900at 426.394 kb on - strand, within IAI47_20900at 426.394 kb on - strand, within IAI47_20900at 426.405 kb on + strand, within IAI47_20900at 426.406 kb on - strand, within IAI47_20900at 426.406 kb on - strand, within IAI47_20900at 426.425 kb on + strand, within IAI47_20900at 426.426 kb on - strand, within IAI47_20900

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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423,419 + IAI47_20890 0.56 +0.8
423,419 + IAI47_20890 0.56 -0.2
423,419 + IAI47_20890 0.56 +0.8
423,419 + IAI47_20890 0.56 +0.4
423,419 + IAI47_20890 0.56 -1.3
423,420 - IAI47_20890 0.56 -0.8
423,420 - IAI47_20890 0.56 +0.4
423,420 - IAI47_20890 0.56 +1.2
423,422 - IAI47_20890 0.56 -1.0
423,521 + IAI47_20890 0.69 +0.7
423,521 + IAI47_20890 0.69 +1.8
423,522 - IAI47_20890 0.69 -0.4
423,522 - IAI47_20890 0.69 +0.2
423,524 + IAI47_20890 0.70 -1.4
423,524 + IAI47_20890 0.70 +2.0
423,525 - IAI47_20890 0.70 +0.5
423,525 - IAI47_20890 0.70 -0.9
423,545 + IAI47_20890 0.72 +2.4
423,585 - IAI47_20890 0.78 +0.9
423,585 - IAI47_20890 0.78 -0.6
423,601 + IAI47_20890 0.80 +0.5
423,601 + IAI47_20890 0.80 +0.4
423,601 + IAI47_20890 0.80 -0.3
423,601 + IAI47_20890 0.80 -0.9
423,698 + +2.4
423,698 + +0.8
423,699 - +1.2
423,699 - -0.2
423,699 - +0.3
423,707 + +0.8
423,707 + -0.0
423,708 - -0.8
423,708 - +1.7
423,708 - +2.1
423,708 - +1.1
423,708 - +0.1
423,715 + -0.9
423,716 - -1.1
423,716 - -0.6
423,772 + -1.9
423,773 - +0.4
423,778 + -0.9
423,778 + +0.6
423,779 - -0.5
423,793 + -0.5
423,793 + -1.5
423,793 + +0.8
423,793 + -0.3
423,830 + -1.6
423,832 + +0.2
423,833 - -2.1
423,833 - +0.9
423,890 + -0.8
423,890 + +1.1
423,890 + -1.1
423,890 + -1.1
423,891 - -1.1
423,891 - +0.8
423,891 - +1.1
423,891 - -0.5
423,891 - +0.7
423,891 - -0.3
423,891 - -1.7
423,893 + -1.1
423,893 + -0.1
423,893 + -0.4
423,893 + +0.1
423,893 + -0.1
423,893 + +0.9
423,893 + +1.1
423,893 + +0.1
423,893 + +0.9
423,894 - -0.2
423,894 - -2.1
423,894 - +2.6
423,894 - +0.5
423,894 - +0.6
423,894 - +1.4
423,969 - -1.8
424,005 - -0.2
424,005 - +0.9
424,017 + -1.8
424,017 + -2.4
424,017 + +1.1
424,045 + -1.2
424,045 + -0.4
424,045 + -0.4
424,046 - +1.4
424,046 - +0.2
424,046 - -0.3
424,046 - +1.0
424,048 + -0.4
424,048 + -1.4
424,048 + -1.2
424,048 + -2.6
424,048 + -0.3
424,048 + -1.3
424,048 + -1.2
424,049 - -0.7
424,049 - -0.8
424,049 - +0.4
424,049 - +1.8
424,049 - -0.0
424,049 - -0.2
424,049 - -1.9
424,049 - -0.2
424,049 - +0.1
424,073 + -0.4
424,073 + +1.3
424,149 + -1.7
424,149 + +1.8
424,168 + -0.2
424,168 + +1.3
424,169 - +1.6
424,169 - +0.4
424,193 + +0.6
424,193 + +0.3
424,193 + +0.8
424,193 + -0.8
424,193 + -0.4
424,193 + +0.3
424,193 + -0.7
424,194 - +2.5
424,194 - -0.8
424,194 - -0.1
424,283 - +0.1
424,311 + +1.4
424,312 - -1.9
424,312 - +1.0
424,315 + +0.5
424,331 + -0.4
424,331 + +0.2
424,331 + +1.1
424,332 - +1.4
424,358 + +0.3
424,359 - -0.2
424,526 - IAI47_20895 0.14 +0.1
424,552 - IAI47_20895 0.16 +0.3
424,613 + IAI47_20895 0.22 +0.2
424,613 + IAI47_20895 0.22 +1.6
424,613 + IAI47_20895 0.22 -0.7
424,613 + IAI47_20895 0.22 +1.9
424,613 + IAI47_20895 0.22 -1.0
424,613 + IAI47_20895 0.22 -0.8
424,613 + IAI47_20895 0.22 -1.3
424,613 + IAI47_20895 0.22 -1.9
424,614 - IAI47_20895 0.22 -0.8
424,614 - IAI47_20895 0.22 +1.9
424,614 - IAI47_20895 0.22 +0.8
424,614 - IAI47_20895 0.22 -0.2
424,756 + IAI47_20895 0.35 -0.9
424,756 + IAI47_20895 0.35 -1.0
424,756 + IAI47_20895 0.35 -1.1
424,757 - IAI47_20895 0.35 -1.2
424,757 - IAI47_20895 0.35 -0.5
424,766 + IAI47_20895 0.36 -1.7
424,766 + IAI47_20895 0.36 -1.6
424,766 + IAI47_20895 0.36 -1.2
424,767 - IAI47_20895 0.36 -2.0
424,821 - IAI47_20895 0.41 +0.6
424,833 + IAI47_20895 0.42 -0.7
424,919 + IAI47_20895 0.51 +1.4
424,919 + IAI47_20895 0.51 +0.6
424,919 + IAI47_20895 0.51 -1.1
424,920 - IAI47_20895 0.51 -2.0
424,920 - IAI47_20895 0.51 -0.9
424,925 + IAI47_20895 0.51 -0.6
424,926 - IAI47_20895 0.51 -1.0
424,926 - IAI47_20895 0.51 +0.1
424,926 - IAI47_20895 0.51 +1.1
424,926 - IAI47_20895 0.51 -0.9
424,985 + IAI47_20895 0.57 -1.9
424,986 - IAI47_20895 0.57 +0.1
425,014 + IAI47_20895 0.59 +0.1
425,014 + IAI47_20895 0.59 -0.5
425,014 + IAI47_20895 0.59 +0.2
425,014 + IAI47_20895 0.59 -1.3
425,014 + IAI47_20895 0.59 -1.8
425,014 + IAI47_20895 0.59 -0.0
425,015 - IAI47_20895 0.59 -0.1
425,015 - IAI47_20895 0.59 +0.3
425,015 - IAI47_20895 0.59 -0.0
425,015 - IAI47_20895 0.59 +2.3
425,015 - IAI47_20895 0.59 +0.4
425,015 - IAI47_20895 0.59 +1.4
425,082 + IAI47_20895 0.66 -1.3
425,112 + IAI47_20895 0.69 -1.9
425,112 + IAI47_20895 0.69 -0.5
425,161 + IAI47_20895 0.73 -0.4
425,295 + IAI47_20895 0.86 +1.5
425,296 - IAI47_20895 0.86 +1.1
425,303 + IAI47_20895 0.86 -2.7
425,304 - IAI47_20895 0.86 -0.5
425,304 - IAI47_20895 0.86 -0.9
425,368 - -0.6
425,368 - -1.2
425,393 + +1.5
425,394 - -0.1
425,394 - -0.6
425,394 - -2.3
425,426 - -0.1
425,449 - +2.4
425,482 + -1.7
425,482 + -0.4
425,482 + -0.6
425,482 + -0.6
425,483 - -0.4
425,483 - -1.1
425,483 - -0.2
425,615 + +0.7
425,615 + -1.9
425,615 + -1.0
425,615 + +1.6
425,615 + +0.2
425,615 + -0.7
425,615 + -1.3
425,616 - -2.0
425,616 - -1.5
425,616 - -0.6
425,616 - -1.8
425,616 - +1.2
425,701 + -0.1
425,728 + +0.5
425,728 + +0.3
425,728 + +2.2
425,728 + -1.1
425,728 + +1.6
425,729 - +2.4
425,729 - -1.5
425,729 - +0.3
425,732 + -1.1
425,732 + +1.8
425,733 - -0.4
425,778 + +0.1
425,778 + -0.9
425,778 + -0.2
425,778 + -0.3
425,779 - -0.6
425,779 - +1.0
425,779 - -2.2
425,779 - +0.2
425,811 + +2.4
425,812 - +2.2
425,859 + IAI47_20900 0.11 -0.8
425,904 + IAI47_20900 0.15 -0.6
425,904 + IAI47_20900 0.15 -0.7
425,905 - IAI47_20900 0.15 -0.4
425,935 - IAI47_20900 0.17 -0.2
425,958 + IAI47_20900 0.19 +0.6
425,958 + IAI47_20900 0.19 +2.7
425,958 + IAI47_20900 0.19 +0.8
425,958 + IAI47_20900 0.19 -1.3
426,061 + IAI47_20900 0.27 -0.6
426,062 - IAI47_20900 0.27 -0.3
426,114 + IAI47_20900 0.32 +4.1
426,115 - IAI47_20900 0.32 +1.4
426,117 + IAI47_20900 0.32 +1.0
426,117 + IAI47_20900 0.32 -0.3
426,117 + IAI47_20900 0.32 -0.8
426,117 + IAI47_20900 0.32 +0.4
426,118 - IAI47_20900 0.32 -0.1
426,118 - IAI47_20900 0.32 +0.9
426,118 - IAI47_20900 0.32 -0.4
426,118 - IAI47_20900 0.32 -0.1
426,146 + IAI47_20900 0.34 -0.9
426,153 + IAI47_20900 0.35 +0.7
426,153 + IAI47_20900 0.35 +0.5
426,154 - IAI47_20900 0.35 -1.6
426,161 + IAI47_20900 0.35 -1.6
426,192 + IAI47_20900 0.38 +1.1
426,193 - IAI47_20900 0.38 -1.9
426,287 + IAI47_20900 0.45 -0.3
426,287 + IAI47_20900 0.45 +1.2
426,287 + IAI47_20900 0.45 -1.2
426,287 + IAI47_20900 0.45 +1.3
426,287 + IAI47_20900 0.45 +1.5
426,287 + IAI47_20900 0.45 -0.4
426,288 - IAI47_20900 0.45 -0.4
426,288 - IAI47_20900 0.45 +0.7
426,288 - IAI47_20900 0.45 +1.0
426,288 - IAI47_20900 0.45 +0.3
426,288 - IAI47_20900 0.45 +1.4
426,288 - IAI47_20900 0.45 +1.0
426,288 - IAI47_20900 0.45 +1.4
426,291 + IAI47_20900 0.46 +0.9
426,291 + IAI47_20900 0.46 +2.7
426,292 - IAI47_20900 0.46 -0.4
426,292 - IAI47_20900 0.46 -1.5
426,292 - IAI47_20900 0.46 -0.8
426,306 + IAI47_20900 0.47 +2.8
426,357 + IAI47_20900 0.51 +1.0
426,358 - IAI47_20900 0.51 -0.7
426,358 - IAI47_20900 0.51 -2.1
426,393 + IAI47_20900 0.54 +0.8
426,393 + IAI47_20900 0.54 -0.8
426,394 - IAI47_20900 0.54 +0.8
426,394 - IAI47_20900 0.54 -2.1
426,405 + IAI47_20900 0.55 -1.4
426,406 - IAI47_20900 0.55 -0.4
426,406 - IAI47_20900 0.55 -1.4
426,425 + IAI47_20900 0.56 +0.1
426,426 - IAI47_20900 0.56 +1.9

Or see this region's nucleotide sequence