Strain Fitness in Pantoea sp. MT58 around IAI47_08605

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,816,790	+		IAI47_08595	0.79	+1.7
1,816,813	+		IAI47_08595	0.80	-0.0
1,816,814	-		IAI47_08595	0.80	+1.9
1,816,814	-				+1.6
1,816,814	-		IAI47_08595	0.80	-0.5
1,816,814	-		IAI47_08595	0.80	+0.2
1,816,817	+		IAI47_08595	0.80	+0.6
1,816,817	+		IAI47_08595	0.80	-0.2
1,816,817	+		IAI47_08595	0.80	+0.6
1,816,817	+		IAI47_08595	0.80	-0.6
1,816,817	+		IAI47_08595	0.80	-1.1
1,816,817	+		IAI47_08595	0.80	+1.0
1,816,817	+		IAI47_08595	0.80	+0.1
1,816,817	+		IAI47_08595	0.80	+1.3
1,816,818	-		IAI47_08595	0.80	-0.6
1,816,818	-		IAI47_08595	0.80	+0.8
1,816,818	-		IAI47_08595	0.80	+0.4
1,816,907	+		IAI47_08595	0.84	+0.2
1,816,907	+		IAI47_08595	0.84	-1.5
1,816,907	+		IAI47_08595	0.84	-1.1
1,816,907	+		IAI47_08595	0.84	-0.4
1,816,907	+		IAI47_08595	0.84	+1.1
1,816,908	-		IAI47_08595	0.84	-1.9
1,816,910	-		IAI47_08595	0.84	-0.9
1,816,952	+		IAI47_08595	0.86	+4.3
1,816,952	+		IAI47_08595	0.86	+2.4
1,816,952	+		IAI47_08595	0.86	-1.3
1,816,952	+		IAI47_08595	0.86	-1.4
1,816,952	+		IAI47_08595	0.86	-0.0
1,816,952	+		IAI47_08595	0.86	-1.2
1,816,953	-		IAI47_08595	0.86	-0.6
1,817,039	+				+3.1
1,817,039	+				+0.4
1,817,040	-				+0.6
1,817,040	-				+0.7
1,817,043	+				-1.6
1,817,043	+				+1.3
1,817,043	+				+0.8
1,817,044	-				+1.6
1,817,044	-				+0.7
1,817,086	+				+0.4
1,817,111	+				-0.3
1,817,111	+				-0.3
1,817,111	+				-0.0
1,817,112	-				+0.5
1,817,112	-				+0.2
1,817,112	-				+1.1
1,817,135	+				-0.8
1,817,135	+				+0.9
1,817,136	-				+0.7
1,817,153	+				-0.4
1,817,154	-				+0.7
1,817,193	+				-0.0
1,817,193	+				+0.3
1,817,193	+				-0.9
1,817,193	+				+1.4
1,817,193	+				+1.8
1,817,194	-				+1.6
1,817,194	-				+1.6
1,817,283	+		IAI47_08600	0.13	-0.6
1,817,284	-		IAI47_08600	0.14	+0.6
1,817,326	+		IAI47_08600	0.38	-0.4
1,817,336	+		IAI47_08600	0.44	+0.3
1,817,337	-		IAI47_08600	0.44	+0.0
1,817,337	-		IAI47_08600	0.44	+1.5
1,817,337	-		IAI47_08600	0.44	-0.6
1,817,395	+		IAI47_08600	0.78	-1.0
1,817,395	+		IAI47_08600	0.78	+1.0
1,817,396	-		IAI47_08600	0.78	+0.6
1,817,397	+		IAI47_08600	0.79	+0.3
1,817,397	+		IAI47_08600	0.79	+2.6
1,817,397	+		IAI47_08600	0.79	+0.3
1,817,397	+		IAI47_08600	0.79	-0.0
1,817,397	+		IAI47_08600	0.79	+2.6
1,817,398	-		IAI47_08600	0.79	-0.4
1,817,398	-		IAI47_08600	0.79	-1.6
1,817,419	+				+1.1
1,817,420	-				-0.6
1,817,445	+				+1.0
1,817,445	+				+0.7
1,817,445	+				-0.3
1,817,445	+				-0.4
1,817,446	-				+2.3
1,817,446	-				-1.5
1,817,446	-				-0.3
1,817,446	-				+0.4
1,817,450	-				+1.6
1,817,467	+				+1.3
1,817,521	+				-1.1
1,817,521	+				-0.1
1,817,521	+				-2.2
1,817,521	+				+1.6
1,817,522	-				-2.1
1,817,544	+				+0.5
1,817,544	+				-1.5
1,817,545	-				+0.4
1,817,570	-				-0.2
1,817,570	-				+1.7
1,817,639	+				-0.4
1,817,639	+				-1.4
1,817,640	-				-0.1
1,817,641	+				+0.8
1,817,700	+				-1.1
1,817,701	-				-0.8
1,817,701	-				+0.0
1,817,727	+				-2.1
1,817,728	-				-0.8
1,817,850	+		IAI47_08605	0.18	-1.0
1,817,986	-		IAI47_08605	0.49	-0.3
1,817,986	-		IAI47_08605	0.49	+1.4
1,817,989	-		IAI47_08605	0.50	+3.2
1,817,989	-		IAI47_08605	0.50	+2.7
1,818,012	+		IAI47_08605	0.55	+0.2
1,818,017	-		IAI47_08605	0.56	+0.5
1,818,047	+		IAI47_08605	0.63	-0.0
1,818,066	+		IAI47_08605	0.67	+0.3
1,818,078	-		IAI47_08605	0.70	+1.3
1,818,157	+		IAI47_08605	0.88	+0.3
1,818,158	-		IAI47_08605	0.88	+0.2
1,818,309	-		IAI47_08610	0.12	+1.3
1,818,309	-		IAI47_08610	0.12	+2.3
1,818,322	-		IAI47_08610	0.15	-1.0
1,818,334	+		IAI47_08610	0.18	+0.7
1,818,334	+		IAI47_08610	0.18	+1.4
1,818,334	+		IAI47_08610	0.18	+0.4
1,818,335	-		IAI47_08610	0.18	+0.2
1,818,375	-		IAI47_08610	0.29	-0.3
1,818,414	-		IAI47_08610	0.39	+0.3
1,818,521	+		IAI47_08610	0.67	+0.1
1,818,522	-		IAI47_08610	0.67	+1.0
1,818,644	+				-1.0
1,818,644	+				+2.9
1,818,645	-				-1.5
1,818,741	-		IAI47_08615	0.27	+0.4
1,818,767	+		IAI47_08615	0.34	+0.2
1,818,767	+		IAI47_08615	0.34	-0.2
1,818,767	+		IAI47_08615	0.34	+0.4
1,818,768	-		IAI47_08615	0.34	+0.8
1,818,795	+		IAI47_08615	0.41	+1.0
1,818,795	+		IAI47_08615	0.41	+0.1
1,818,796	-		IAI47_08615	0.42	+0.4
1,818,871	+		IAI47_08615	0.62	+0.5
1,818,871	+		IAI47_08615	0.62	+1.0
1,818,871	+		IAI47_08615	0.62	-0.6
1,818,871	+		IAI47_08615	0.62	+1.1
1,818,871	+		IAI47_08615	0.62	-2.0
1,818,872	-		IAI47_08615	0.62	+0.0
1,818,872	-		IAI47_08615	0.62	-2.7
1,818,872	-		IAI47_08615	0.62	+0.2
1,819,043	-				-0.3
1,819,043	-				-0.3
1,819,043	-				-0.3
1,819,048	+				-2.7
1,819,049	-				+1.8
1,819,058	+				+0.4
1,819,058	+				-0.3
1,819,065	-				-0.5
1,819,107	+				-1.4
1,819,109	+				-1.8
1,819,151	+				+0.8
1,819,152	-				+2.0
1,819,152	-				+2.1
1,819,153	+				-0.3
1,819,153	+				+2.5
1,819,154	-				-0.5