Strain Fitness in Pantoea sp. MT58 around IAI47_07550

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,594,143	+		IAI47_07545	0.39	-0.1
1,594,144	-		IAI47_07545	0.39	+0.5
1,594,144	-		IAI47_07545	0.39	-0.9
1,594,148	+		IAI47_07545	0.39	-0.9
1,594,185	+		IAI47_07545	0.42	-0.4
1,594,186	-		IAI47_07545	0.42	-0.4
1,594,186	-		IAI47_07545	0.42	-0.2
1,594,186	-		IAI47_07545	0.42	+0.6
1,594,233	+		IAI47_07545	0.46	-0.4
1,594,233	+		IAI47_07545	0.46	-0.6
1,594,233	+		IAI47_07545	0.46	+0.9
1,594,233	+		IAI47_07545	0.46	-0.8
1,594,233	+		IAI47_07545	0.46	-0.6
1,594,234	-		IAI47_07545	0.46	-0.7
1,594,234	-		IAI47_07545	0.46	+0.6
1,594,234	-		IAI47_07545	0.46	-2.6
1,594,234	-		IAI47_07545	0.46	-0.5
1,594,255	+		IAI47_07545	0.47	+1.8
1,594,255	+		IAI47_07545	0.47	+1.9
1,594,256	-		IAI47_07545	0.48	-0.4
1,594,256	-		IAI47_07545	0.48	-0.5
1,594,275	+		IAI47_07545	0.49	-0.3
1,594,276	-		IAI47_07545	0.49	-0.5
1,594,346	+		IAI47_07545	0.55	+0.5
1,594,346	+		IAI47_07545	0.55	-0.5
1,594,346	+		IAI47_07545	0.55	+0.1
1,594,347	-		IAI47_07545	0.55	+0.5
1,594,347	-		IAI47_07545	0.55	+1.0
1,594,351	+		IAI47_07545	0.55	-2.5
1,594,351	+		IAI47_07545	0.55	-0.8
1,594,351	+		IAI47_07545	0.55	-0.0
1,594,351	+		IAI47_07545	0.55	+0.9
1,594,351	+		IAI47_07545	0.55	-1.2
1,594,352	-		IAI47_07545	0.55	+1.5
1,594,352	-		IAI47_07545	0.55	-0.4
1,594,361	+		IAI47_07545	0.56	-1.8
1,594,368	+		IAI47_07545	0.56	-0.7
1,594,368	+		IAI47_07545	0.56	+0.8
1,594,368	+		IAI47_07545	0.56	+0.4
1,594,369	-		IAI47_07545	0.56	-1.2
1,594,369	-		IAI47_07545	0.56	-0.6
1,594,369	-		IAI47_07545	0.56	+0.7
1,594,406	+		IAI47_07545	0.59	-1.1
1,594,406	+		IAI47_07545	0.59	+0.1
1,594,411	+		IAI47_07545	0.60	-1.6
1,594,411	+		IAI47_07545	0.60	-0.1
1,594,411	+		IAI47_07545	0.60	+0.6
1,594,411	+		IAI47_07545	0.60	-0.1
1,594,412	-		IAI47_07545	0.60	+1.8
1,594,412	-		IAI47_07545	0.60	-0.5
1,594,412	-		IAI47_07545	0.60	+1.0
1,594,412	-		IAI47_07545	0.60	+0.6
1,594,412	-		IAI47_07545	0.60	-1.1
1,594,441	+		IAI47_07545	0.62	-0.4
1,594,488	-		IAI47_07545	0.66	-1.2
1,594,531	+		IAI47_07545	0.69	-2.1
1,594,531	+		IAI47_07545	0.69	-0.3
1,594,532	-		IAI47_07545	0.69	+0.0
1,594,532	-		IAI47_07545	0.69	-0.2
1,594,532	-		IAI47_07545	0.69	-1.3
1,594,532	-		IAI47_07545	0.69	+0.5
1,594,552	-		IAI47_07545	0.71	-1.2
1,594,564	+		IAI47_07545	0.72	+1.1
1,594,565	-		IAI47_07545	0.72	-1.6
1,594,565	-		IAI47_07545	0.72	-0.5
1,594,611	+		IAI47_07545	0.75	+0.5
1,594,611	+		IAI47_07545	0.75	+2.5
1,594,611	+		IAI47_07545	0.75	+0.9
1,594,611	+		IAI47_07545	0.75	+0.4
1,594,612	-		IAI47_07545	0.76	-0.2
1,594,612	-		IAI47_07545	0.76	-0.3
1,594,612	-		IAI47_07545	0.76	+1.2
1,594,631	+		IAI47_07545	0.77	-2.3
1,594,632	-		IAI47_07545	0.77	+4.8
1,594,640	+		IAI47_07545	0.78	-2.2
1,594,640	+		IAI47_07545	0.78	-0.5
1,594,641	-		IAI47_07545	0.78	-0.3
1,594,656	-		IAI47_07545	0.79	+1.6
1,594,679	+		IAI47_07545	0.81	-2.2
1,594,679	+		IAI47_07545	0.81	+1.4
1,594,766	+		IAI47_07545	0.88	+0.4
1,594,766	+		IAI47_07545	0.88	-0.1
1,594,766	+		IAI47_07545	0.88	+1.4
1,594,766	+		IAI47_07545	0.88	-0.9
1,594,766	+		IAI47_07545	0.88	-1.8
1,594,767	-		IAI47_07545	0.88	+1.6
1,594,767	-		IAI47_07545	0.88	-0.6
1,594,798	+				-0.3
1,594,813	+				+1.5
1,594,813	+				+0.8
1,594,814	-				+0.9
1,594,847	+				-1.4
1,594,847	+				-0.3
1,594,847	+				+0.4
1,594,847	+				-1.2
1,594,848	-				+0.8
1,594,848	-				+1.1
1,594,848	-				+0.9
1,594,848	-				-0.8
1,594,848	-				-0.1
1,594,848	-				-1.2
1,594,848	-				-0.0
1,594,862	+				-1.6
1,594,862	+				-0.4
1,594,862	+				-1.2
1,594,863	-				-1.2
1,594,863	-				-0.5
1,594,863	-				-0.8
1,594,870	+				-1.4
1,594,870	+				+0.0
1,594,870	+				-0.8
1,594,870	+				+0.9
1,594,870	+				-2.2
1,594,870	+				+0.2
1,594,871	-				+0.7
1,594,905	-				+1.2
1,594,908	-				+2.1
1,594,908	-				-0.3
1,594,969	+				-0.6
1,595,015	-				-1.0
1,595,136	-		IAI47_07550	0.43	-1.3
1,595,136	-		IAI47_07550	0.43	-1.7
1,595,198	+				-0.8
1,595,209	+				-0.9
1,595,209	+				-0.8
1,595,209	+				-1.6
1,595,210	-				-0.8
1,595,210	-				+1.5
1,595,259	+				+1.3
1,595,260	-				-2.1
1,595,344	+				+0.3
1,595,345	-				+0.5
1,595,345	-				-0.8
1,595,345	-				-1.1
1,595,351	+				-1.1
1,595,352	-				+1.5
1,595,507	-				+0.4
1,595,507	-				-0.4
1,595,577	-				-0.6
1,595,671	+				+1.2
1,595,671	+				-0.2
1,595,671	+				-1.0
1,595,671	+				+1.1
1,595,671	+				+0.3
1,595,671	+				-0.3
1,595,671	+				-1.6
1,595,672	-				-1.0
1,595,672	-				+0.1
1,595,672	-				-0.1
1,595,672	-				+0.2
1,595,672	-				+1.6
1,595,672	-				-0.4
1,595,694	-				+2.5
1,595,731	+				+0.7
1,595,731	+				+1.2
1,595,731	+				-1.3
1,595,731	+				-0.2
1,595,732	-				-0.5
1,595,732	-				+1.4
1,595,732	-				-0.3
1,595,756	+				+1.1
1,595,757	-				+1.7
1,595,814	-		IAI47_07555	0.14	+0.7
1,595,902	+		IAI47_07555	0.23	-0.5
1,595,913	-		IAI47_07555	0.25	+0.0
1,595,973	-		IAI47_07555	0.31	-0.3
1,596,017	-		IAI47_07555	0.36	-0.7
1,596,057	+		IAI47_07555	0.40	+2.5
1,596,057	+		IAI47_07555	0.40	-2.6
1,596,057	+		IAI47_07555	0.40	-0.3
1,596,057	+		IAI47_07555	0.40	+1.9
1,596,058	-		IAI47_07555	0.40	+1.6
1,596,091	+		IAI47_07555	0.44	+0.4
1,596,091	+		IAI47_07555	0.44	+0.3
1,596,092	-		IAI47_07555	0.44	-0.4