Strain Fitness in Pantoea sp. MT58 around IAI47_07540

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,592,227	+		IAI47_07535	0.51	+0.4
1,592,227	+		IAI47_07535	0.51	-1.5
1,592,228	-		IAI47_07535	0.51	-1.2
1,592,245	-		IAI47_07535	0.52	+1.3
1,592,249	-		IAI47_07535	0.52	-0.7
1,592,355	+		IAI47_07535	0.58	+1.5
1,592,356	-		IAI47_07535	0.58	+2.4
1,592,567	+		IAI47_07535	0.69	-0.6
1,592,623	+		IAI47_07535	0.71	-0.1
1,592,693	+		IAI47_07535	0.75	-0.3
1,592,693	+		IAI47_07535	0.75	+0.2
1,592,747	+		IAI47_07535	0.78	-1.3
1,592,747	+		IAI47_07535	0.78	-0.5
1,592,766	-		IAI47_07535	0.79	+0.3
1,592,766	-		IAI47_07535	0.79	-0.3
1,592,783	+		IAI47_07535	0.80	-0.6
1,592,784	-		IAI47_07535	0.80	-1.6
1,592,789	+		IAI47_07535	0.80	+1.1
1,592,789	+		IAI47_07535	0.80	+0.9
1,592,789	+		IAI47_07535	0.80	+0.1
1,592,790	-		IAI47_07535	0.80	-0.4
1,592,794	+		IAI47_07535	0.80	+0.4
1,592,795	-		IAI47_07535	0.80	-0.6
1,592,795	-		IAI47_07535	0.80	+0.4
1,592,809	+		IAI47_07535	0.81	+1.4
1,592,809	+		IAI47_07535	0.81	+0.3
1,592,809	+		IAI47_07535	0.81	-0.4
1,592,810	-		IAI47_07535	0.81	+0.2
1,592,810	-		IAI47_07535	0.81	-0.9
1,592,810	-		IAI47_07535	0.81	+2.1
1,592,833	+		IAI47_07535	0.82	-0.2
1,592,834	-		IAI47_07535	0.82	-0.7
1,592,834	-		IAI47_07535	0.82	+1.4
1,592,846	+		IAI47_07535	0.83	-2.1
1,592,846	+		IAI47_07535	0.83	+0.4
1,592,847	-		IAI47_07535	0.83	+0.1
1,592,847	-		IAI47_07535	0.83	-1.5
1,592,856	+		IAI47_07535	0.83	-0.6
1,592,868	-		IAI47_07535	0.84	+0.7
1,592,927	+		IAI47_07535	0.87	+0.5
1,592,927	+		IAI47_07535	0.87	+2.5
1,592,927	+		IAI47_07535	0.87	-0.5
1,592,928	-		IAI47_07535	0.87	+1.2
1,592,955	+		IAI47_07535	0.89	+1.9
1,592,960	+		IAI47_07535	0.89	+1.2
1,592,977	+		IAI47_07535	0.90	+0.2
1,593,005	-				-1.4
1,593,005	-				-1.0
1,593,081	-				-0.4
1,593,102	-				+1.4
1,593,125	+				+0.9
1,593,132	-				-0.6
1,593,132	-				+0.5
1,593,132	-				-1.1
1,593,194	-				-0.2
1,593,234	-		IAI47_07540	0.16	+0.3
1,593,234	-		IAI47_07540	0.16	-1.3
1,593,234	-		IAI47_07540	0.16	+0.8
1,593,239	+		IAI47_07540	0.18	-0.6
1,593,239	+		IAI47_07540	0.18	-1.6
1,593,239	+		IAI47_07540	0.18	+2.7
1,593,239	+		IAI47_07540	0.18	+0.8
1,593,239	+		IAI47_07540	0.18	-0.2
1,593,240	-		IAI47_07540	0.18	+3.2
1,593,240	-		IAI47_07540	0.18	-0.5
1,593,240	-		IAI47_07540	0.18	-0.3
1,593,240	-		IAI47_07540	0.18	-1.6
1,593,246	-		IAI47_07540	0.20	+1.7
1,593,246	-		IAI47_07540	0.20	+1.3
1,593,246	-		IAI47_07540	0.20	+0.7
1,593,246	-		IAI47_07540	0.20	-1.3
1,593,246	-		IAI47_07540	0.20	-1.3
1,593,248	+		IAI47_07540	0.21	-0.6
1,593,249	-		IAI47_07540	0.21	-0.6
1,593,249	-		IAI47_07540	0.21	-0.3
1,593,249	-		IAI47_07540	0.21	-0.9
1,593,249	-		IAI47_07540	0.21	-0.5
1,593,249	-		IAI47_07540	0.21	-1.6
1,593,249	-		IAI47_07540	0.21	-0.2
1,593,295	-		IAI47_07540	0.38	-0.0
1,593,295	-		IAI47_07540	0.38	-0.4
1,593,295	-		IAI47_07540	0.38	-1.6
1,593,310	+		IAI47_07540	0.43	-0.2
1,593,311	-		IAI47_07540	0.43	+0.8
1,593,311	-		IAI47_07540	0.43	+0.5
1,593,315	-		IAI47_07540	0.45	+0.7
1,593,315	-		IAI47_07540	0.45	+0.9
1,593,315	-		IAI47_07540	0.45	-0.4
1,593,315	-		IAI47_07540	0.45	+1.0
1,593,315	-		IAI47_07540	0.45	-0.6
1,593,321	-		IAI47_07540	0.47	-0.9
1,593,321	-		IAI47_07540	0.47	-0.0
1,593,321	-		IAI47_07540	0.47	+1.4
1,593,321	-		IAI47_07540	0.47	+0.5
1,593,321	-		IAI47_07540	0.47	+1.8
1,593,321	-		IAI47_07540	0.47	+0.2
1,593,321	-		IAI47_07540	0.47	+0.9
1,593,361	+		IAI47_07540	0.61	-0.6
1,593,361	+		IAI47_07540	0.61	+0.9
1,593,361	+		IAI47_07540	0.61	+1.9
1,593,361	+		IAI47_07540	0.61	-0.1
1,593,362	-		IAI47_07540	0.61	+0.6
1,593,362	-		IAI47_07540	0.61	-1.1
1,593,362	-		IAI47_07540	0.61	-1.5
1,593,362	-		IAI47_07540	0.61	+1.2
1,593,363	+		IAI47_07540	0.61	+1.0
1,593,364	-		IAI47_07540	0.62	+0.1
1,593,364	-		IAI47_07540	0.62	+0.4
1,593,364	-		IAI47_07540	0.62	+1.9
1,593,364	-		IAI47_07540	0.62	-0.6
1,593,374	-		IAI47_07540	0.65	+0.5
1,593,383	+		IAI47_07540	0.68	+0.7
1,593,383	+		IAI47_07540	0.68	-0.9
1,593,384	-		IAI47_07540	0.69	-0.5
1,593,384	-		IAI47_07540	0.69	+0.3
1,593,384	-		IAI47_07540	0.69	-0.2
1,593,384	-		IAI47_07540	0.69	+0.9
1,593,384	-		IAI47_07540	0.69	+0.5
1,593,384	-		IAI47_07540	0.69	-0.2
1,593,384	-		IAI47_07540	0.69	+2.0
1,593,384	-		IAI47_07540	0.69	+2.2
1,593,384	-		IAI47_07540	0.69	-1.6
1,593,384	-		IAI47_07540	0.69	-0.0
1,593,394	+		IAI47_07540	0.72	+0.0
1,593,394	+		IAI47_07540	0.72	+0.3
1,593,395	-		IAI47_07540	0.73	+1.7
1,593,395	-		IAI47_07540	0.73	+0.5
1,593,395	-		IAI47_07540	0.73	+1.2
1,593,401	+		IAI47_07540	0.75	+1.9
1,593,402	-		IAI47_07540	0.75	-0.5
1,593,402	-		IAI47_07540	0.75	+1.4
1,593,436	+		IAI47_07540	0.87	-0.6
1,593,436	+		IAI47_07540	0.87	+2.3
1,593,437	-		IAI47_07540	0.87	+1.3
1,593,457	+				-0.0
1,593,457	+				-0.3
1,593,458	-				-0.9
1,593,458	-				+0.0
1,593,467	+				+0.2
1,593,467	+				+0.9
1,593,467	+				+0.8
1,593,468	-				-0.1
1,593,468	-				-1.6
1,593,468	-				+1.1
1,593,468	-				+1.2
1,593,476	+				+1.2
1,593,490	+				+0.2
1,593,490	+				+0.1
1,593,490	+				-0.2
1,593,494	-				-2.7
1,593,527	+				+1.1
1,593,528	-				-0.6
1,593,530	+				+1.2
1,593,530	+				-0.0
1,593,530	+				-0.0
1,593,530	+				-2.0
1,593,531	-				-0.4
1,593,531	-				+0.4
1,593,544	-				-0.2
1,593,572	+				-1.1
1,593,573	-				-0.6
1,593,602	-				+0.7
1,593,602	-				+0.1
1,593,602	-				+0.9
1,593,613	+				+2.8
1,593,613	+				+0.3
1,593,624	+				+1.6
1,593,683	+				+1.0
1,593,683	+				+0.2
1,593,683	+				-0.5
1,593,684	-				+1.8
1,593,695	+				-0.2
1,593,696	-				+0.9
1,593,758	+				+0.6
1,593,759	-				+1.5
1,593,759	-				-2.1
1,593,759	-				+0.7
1,593,767	-				+1.2
1,593,831	+		IAI47_07545	0.14	+0.9
1,593,831	+		IAI47_07545	0.14	+1.2
1,593,832	-		IAI47_07545	0.14	-0.3
1,593,832	-		IAI47_07545	0.14	+1.5
1,593,846	+		IAI47_07545	0.15	+0.3
1,593,846	+		IAI47_07545	0.15	-1.7
1,593,846	+		IAI47_07545	0.15	+0.8
1,593,846	+		IAI47_07545	0.15	-0.5
1,593,847	-		IAI47_07545	0.15	+1.1
1,593,847	-		IAI47_07545	0.15	+0.2
1,593,847	-		IAI47_07545	0.15	+0.5
1,593,847	-		IAI47_07545	0.15	-0.9
1,593,854	+		IAI47_07545	0.16	+0.0
1,593,854	+		IAI47_07545	0.16	-0.1
1,593,855	-		IAI47_07545	0.16	+0.0
1,593,855	-		IAI47_07545	0.16	-0.1
1,593,855	-		IAI47_07545	0.16	+0.4
1,593,904	+		IAI47_07545	0.20	-0.5
1,593,905	-		IAI47_07545	0.20	-0.1
1,593,906	-		IAI47_07545	0.20	+0.7
1,593,953	+		IAI47_07545	0.24	-0.1
1,593,965	-		IAI47_07545	0.25	+0.0
1,593,965	-		IAI47_07545	0.25	-0.1
1,593,975	-		IAI47_07545	0.25	-1.3
1,593,981	+		IAI47_07545	0.26	+2.2
1,593,981	+		IAI47_07545	0.26	-1.5
1,593,982	-		IAI47_07545	0.26	+0.7
1,593,982	-		IAI47_07545	0.26	-1.2
1,594,006	+		IAI47_07545	0.28	-0.6
1,594,007	-		IAI47_07545	0.28	+1.5
1,594,033	-		IAI47_07545	0.30	-0.3
1,594,049	+		IAI47_07545	0.31	+0.5
1,594,049	+		IAI47_07545	0.31	+1.5
1,594,049	+		IAI47_07545	0.31	+0.5
1,594,049	+		IAI47_07545	0.31	+1.5
1,594,049	+		IAI47_07545	0.31	-1.6
1,594,049	+		IAI47_07545	0.31	-1.9
1,594,050	-		IAI47_07545	0.31	-0.1
1,594,050	-		IAI47_07545	0.31	+1.1
1,594,050	-		IAI47_07545	0.31	-1.4
1,594,050	-		IAI47_07545	0.31	-1.4
1,594,071	-		IAI47_07545	0.33	+0.9
1,594,071	-		IAI47_07545	0.33	-0.8
1,594,143	+		IAI47_07545	0.39	-0.1
1,594,144	-		IAI47_07545	0.39	+0.5
1,594,144	-		IAI47_07545	0.39	-0.9
1,594,148	+		IAI47_07545	0.39	-0.9
1,594,185	+		IAI47_07545	0.42	-0.4
1,594,186	-		IAI47_07545	0.42	-0.4
1,594,186	-		IAI47_07545	0.42	-0.2
1,594,186	-		IAI47_07545	0.42	+0.6
1,594,233	+		IAI47_07545	0.46	-0.4
1,594,233	+		IAI47_07545	0.46	-0.6
1,594,233	+		IAI47_07545	0.46	+0.9
1,594,233	+		IAI47_07545	0.46	-0.8
1,594,233	+		IAI47_07545	0.46	-0.6
1,594,234	-		IAI47_07545	0.46	-0.7
1,594,234	-		IAI47_07545	0.46	+0.6
1,594,234	-		IAI47_07545	0.46	-2.6
1,594,234	-		IAI47_07545	0.46	-0.5
1,594,255	+		IAI47_07545	0.47	+1.8
1,594,255	+		IAI47_07545	0.47	+1.9
1,594,256	-		IAI47_07545	0.48	-0.4
1,594,256	-		IAI47_07545	0.48	-0.5
1,594,275	+		IAI47_07545	0.49	-0.3
1,594,276	-		IAI47_07545	0.49	-0.5
1,594,346	+		IAI47_07545	0.55	+0.5
1,594,346	+		IAI47_07545	0.55	-0.5
1,594,346	+		IAI47_07545	0.55	+0.1
1,594,347	-		IAI47_07545	0.55	+0.5
1,594,347	-		IAI47_07545	0.55	+1.0
1,594,351	+		IAI47_07545	0.55	-2.5
1,594,351	+		IAI47_07545	0.55	-0.8
1,594,351	+		IAI47_07545	0.55	-0.0
1,594,351	+		IAI47_07545	0.55	+0.9
1,594,351	+		IAI47_07545	0.55	-1.2
1,594,352	-		IAI47_07545	0.55	+1.5
1,594,352	-		IAI47_07545	0.55	-0.4
1,594,361	+		IAI47_07545	0.56	-1.8
1,594,368	+		IAI47_07545	0.56	-0.7
1,594,368	+		IAI47_07545	0.56	+0.8
1,594,368	+		IAI47_07545	0.56	+0.4
1,594,369	-		IAI47_07545	0.56	-1.2
1,594,369	-		IAI47_07545	0.56	-0.6
1,594,369	-		IAI47_07545	0.56	+0.7
1,594,406	+		IAI47_07545	0.59	-1.1
1,594,406	+		IAI47_07545	0.59	+0.1
1,594,411	+		IAI47_07545	0.60	-1.6
1,594,411	+		IAI47_07545	0.60	-0.1
1,594,411	+		IAI47_07545	0.60	+0.6
1,594,411	+		IAI47_07545	0.60	-0.1
1,594,412	-		IAI47_07545	0.60	+1.8
1,594,412	-		IAI47_07545	0.60	-0.5
1,594,412	-		IAI47_07545	0.60	+1.0
1,594,412	-		IAI47_07545	0.60	+0.6
1,594,412	-		IAI47_07545	0.60	-1.1
1,594,441	+		IAI47_07545	0.62	-0.4