Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04615 and IAI47_04620 are separated by 144 nucleotides IAI47_04620 and IAI47_04625 are separated by 328 nucleotides IAI47_04625 and IAI47_04630 overlap by 4 nucleotides IAI47_04630 and IAI47_04635 overlap by 4 nucleotides
IAI47_04615: IAI47_04615 - cold shock domain-containing protein, at 973,060 to 973,548
_04615
IAI47_04620: IAI47_04620 - YmjA family protein, at 973,693 to 973,938
_04620
IAI47_04625: IAI47_04625 - ribokinase, at 974,267 to 975,229
_04625
IAI47_04630: IAI47_04630 - allose kinase, at 975,226 to 976,122
_04630
IAI47_04635: IAI47_04635 - ribulose-phosphate 3-epimerase, at 976,119 to 976,811
_04635
Position (kb) 974
975
976 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 973.292 kb on + strand, within IAI47_04615 at 973.292 kb on + strand, within IAI47_04615 at 973.293 kb on - strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.334 kb on + strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.335 kb on - strand, within IAI47_04615 at 973.340 kb on + strand, within IAI47_04615 at 973.340 kb on + strand, within IAI47_04615 at 973.340 kb on + strand, within IAI47_04615 at 973.340 kb on + strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.341 kb on - strand, within IAI47_04615 at 973.370 kb on + strand, within IAI47_04615 at 973.371 kb on - strand, within IAI47_04615 at 973.371 kb on - strand, within IAI47_04615 at 973.378 kb on + strand, within IAI47_04615 at 973.378 kb on + strand, within IAI47_04615 at 973.378 kb on + strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.379 kb on - strand, within IAI47_04615 at 973.452 kb on + strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.453 kb on - strand, within IAI47_04615 at 973.509 kb on + strand at 973.560 kb on + strand at 973.560 kb on + strand at 973.560 kb on + strand at 973.560 kb on + strand at 973.560 kb on + strand at 973.560 kb on + strand at 973.561 kb on - strand at 973.561 kb on - strand at 973.561 kb on - strand at 973.561 kb on - strand at 973.561 kb on - strand at 973.565 kb on + strand at 973.565 kb on + strand at 973.566 kb on - strand at 973.566 kb on - strand at 973.591 kb on + strand at 973.591 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.614 kb on + strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.615 kb on - strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.616 kb on + strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.617 kb on - strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.618 kb on + strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.619 kb on - strand at 973.660 kb on + strand at 973.661 kb on - strand at 973.687 kb on + strand at 973.688 kb on - strand at 973.688 kb on - strand at 973.688 kb on - strand at 973.694 kb on + strand at 973.694 kb on + strand at 973.695 kb on - strand at 973.695 kb on - strand at 973.729 kb on - strand, within IAI47_04620 at 973.737 kb on + strand, within IAI47_04620 at 973.737 kb on + strand, within IAI47_04620 at 973.737 kb on + strand, within IAI47_04620 at 973.737 kb on + strand, within IAI47_04620 at 973.737 kb on + strand, within IAI47_04620 at 973.737 kb on + strand, within IAI47_04620 at 973.738 kb on - strand, within IAI47_04620 at 973.738 kb on - strand, within IAI47_04620 at 973.738 kb on - strand, within IAI47_04620 at 973.738 kb on - strand, within IAI47_04620 at 973.738 kb on - strand, within IAI47_04620 at 973.738 kb on - strand, within IAI47_04620 at 973.738 kb on - strand, within IAI47_04620 at 973.738 kb on - strand, within IAI47_04620 at 973.770 kb on + strand, within IAI47_04620 at 973.835 kb on + strand, within IAI47_04620 at 973.835 kb on + strand, within IAI47_04620 at 973.835 kb on + strand, within IAI47_04620 at 973.835 kb on + strand, within IAI47_04620 at 973.836 kb on - strand, within IAI47_04620 at 973.851 kb on + strand, within IAI47_04620 at 973.852 kb on - strand, within IAI47_04620 at 973.876 kb on - strand, within IAI47_04620 at 973.892 kb on + strand, within IAI47_04620 at 973.892 kb on + strand, within IAI47_04620 at 973.892 kb on + strand, within IAI47_04620 at 973.893 kb on - strand, within IAI47_04620 at 973.893 kb on - strand, within IAI47_04620 at 973.893 kb on - strand, within IAI47_04620 at 973.893 kb on - strand, within IAI47_04620 at 973.910 kb on + strand, within IAI47_04620 at 973.910 kb on + strand, within IAI47_04620 at 973.911 kb on - strand, within IAI47_04620 at 973.911 kb on - strand, within IAI47_04620 at 973.911 kb on - strand, within IAI47_04620 at 973.911 kb on - strand, within IAI47_04620 at 973.913 kb on + strand, within IAI47_04620 at 973.914 kb on - strand at 973.914 kb on - strand at 973.932 kb on + strand at 973.938 kb on + strand at 973.938 kb on + strand at 973.938 kb on + strand at 973.938 kb on + strand at 973.939 kb on - strand at 973.939 kb on - strand at 973.939 kb on - strand at 973.962 kb on - strand at 973.962 kb on - strand at 973.962 kb on - strand at 974.007 kb on + strand at 974.007 kb on + strand at 974.007 kb on + strand at 974.008 kb on - strand at 974.078 kb on - strand at 974.078 kb on - strand at 974.078 kb on - strand at 974.079 kb on + strand at 974.079 kb on + strand at 974.080 kb on - strand at 974.108 kb on + strand at 974.277 kb on - strand at 974.277 kb on - strand at 974.277 kb on - strand at 974.296 kb on + strand at 974.299 kb on + strand at 974.299 kb on + strand at 974.300 kb on - strand at 974.300 kb on - strand at 974.300 kb on - strand at 974.300 kb on - strand at 974.340 kb on + strand at 974.341 kb on - strand at 974.515 kb on + strand, within IAI47_04625 at 974.515 kb on + strand, within IAI47_04625 at 974.516 kb on - strand, within IAI47_04625 at 974.516 kb on - strand, within IAI47_04625 at 974.536 kb on + strand, within IAI47_04625 at 974.536 kb on + strand, within IAI47_04625 at 974.536 kb on + strand, within IAI47_04625 at 974.536 kb on + strand, within IAI47_04625 at 974.536 kb on + strand, within IAI47_04625 at 974.537 kb on - strand, within IAI47_04625 at 974.537 kb on - strand, within IAI47_04625 at 974.569 kb on + strand, within IAI47_04625 at 974.569 kb on + strand, within IAI47_04625 at 974.590 kb on + strand, within IAI47_04625 at 974.591 kb on - strand, within IAI47_04625 at 974.600 kb on + strand, within IAI47_04625 at 974.601 kb on - strand, within IAI47_04625 at 974.601 kb on - strand, within IAI47_04625 at 974.601 kb on - strand, within IAI47_04625 at 974.635 kb on + strand, within IAI47_04625 at 974.636 kb on - strand, within IAI47_04625 at 974.636 kb on - strand, within IAI47_04625 at 974.643 kb on - strand, within IAI47_04625 at 974.650 kb on + strand, within IAI47_04625 at 974.651 kb on - strand, within IAI47_04625 at 974.675 kb on - strand, within IAI47_04625 at 974.770 kb on + strand, within IAI47_04625 at 974.770 kb on + strand, within IAI47_04625 at 974.771 kb on - strand, within IAI47_04625 at 974.813 kb on + strand, within IAI47_04625 at 974.813 kb on + strand, within IAI47_04625 at 974.814 kb on - strand, within IAI47_04625 at 974.814 kb on - strand, within IAI47_04625 at 974.842 kb on + strand, within IAI47_04625 at 974.842 kb on + strand, within IAI47_04625 at 974.843 kb on - strand, within IAI47_04625 at 974.881 kb on + strand, within IAI47_04625 at 974.881 kb on + strand, within IAI47_04625 at 974.882 kb on - strand, within IAI47_04625 at 974.882 kb on - strand, within IAI47_04625 at 974.908 kb on + strand, within IAI47_04625 at 974.909 kb on - strand, within IAI47_04625 at 974.934 kb on + strand, within IAI47_04625 at 974.934 kb on + strand, within IAI47_04625 at 974.934 kb on + strand, within IAI47_04625 at 974.935 kb on - strand, within IAI47_04625 at 974.935 kb on - strand, within IAI47_04625 at 974.935 kb on - strand, within IAI47_04625 at 974.966 kb on - strand, within IAI47_04625 at 974.971 kb on + strand, within IAI47_04625 at 974.971 kb on + strand, within IAI47_04625 at 974.971 kb on + strand, within IAI47_04625 at 974.971 kb on + strand, within IAI47_04625 at 974.972 kb on - strand, within IAI47_04625 at 974.972 kb on - strand, within IAI47_04625 at 974.980 kb on + strand, within IAI47_04625 at 974.980 kb on + strand, within IAI47_04625 at 974.981 kb on - strand, within IAI47_04625 at 974.981 kb on - strand, within IAI47_04625 at 974.981 kb on - strand, within IAI47_04625 at 974.981 kb on - strand, within IAI47_04625 at 974.981 kb on - strand, within IAI47_04625 at 974.981 kb on - strand, within IAI47_04625 at 974.981 kb on - strand, within IAI47_04625 at 975.057 kb on + strand, within IAI47_04625 at 975.057 kb on + strand, within IAI47_04625 at 975.057 kb on + strand, within IAI47_04625 at 975.058 kb on - strand, within IAI47_04625 at 975.058 kb on - strand, within IAI47_04625 at 975.109 kb on + strand, within IAI47_04625 at 975.196 kb on + strand at 975.196 kb on + strand at 975.196 kb on + strand at 975.197 kb on - strand at 975.215 kb on + strand at 975.215 kb on + strand at 975.215 kb on + strand at 975.215 kb on + strand at 975.215 kb on + strand at 975.215 kb on + strand at 975.215 kb on + strand at 975.216 kb on - strand at 975.285 kb on - strand at 975.433 kb on + strand, within IAI47_04630 at 975.433 kb on + strand, within IAI47_04630 at 975.433 kb on + strand, within IAI47_04630 at 975.433 kb on + strand, within IAI47_04630 at 975.433 kb on + strand, within IAI47_04630 at 975.433 kb on + strand, within IAI47_04630 at 975.433 kb on + strand, within IAI47_04630 at 975.434 kb on - strand, within IAI47_04630 at 975.434 kb on - strand, within IAI47_04630 at 975.434 kb on - strand, within IAI47_04630 at 975.434 kb on - strand, within IAI47_04630 at 975.434 kb on - strand, within IAI47_04630 at 975.435 kb on + strand, within IAI47_04630 at 975.435 kb on + strand, within IAI47_04630 at 975.435 kb on + strand, within IAI47_04630 at 975.435 kb on + strand, within IAI47_04630 at 975.435 kb on + strand, within IAI47_04630 at 975.435 kb on + strand, within IAI47_04630 at 975.435 kb on + strand, within IAI47_04630 at 975.436 kb on - strand, within IAI47_04630 at 975.436 kb on - strand, within IAI47_04630 at 975.436 kb on - strand, within IAI47_04630 at 975.525 kb on + strand, within IAI47_04630 at 975.680 kb on + strand, within IAI47_04630 at 975.680 kb on + strand, within IAI47_04630 at 975.681 kb on - strand, within IAI47_04630 at 975.681 kb on - strand, within IAI47_04630 at 975.681 kb on - strand, within IAI47_04630 at 975.873 kb on + strand, within IAI47_04630 at 975.874 kb on - strand, within IAI47_04630 at 975.933 kb on + strand, within IAI47_04630 at 975.933 kb on + strand, within IAI47_04630 at 975.934 kb on - strand, within IAI47_04630 at 975.934 kb on - strand, within IAI47_04630 at 975.934 kb on - strand, within IAI47_04630 at 975.934 kb on - strand, within IAI47_04630 at 975.972 kb on + strand, within IAI47_04630 at 975.972 kb on + strand, within IAI47_04630 at 975.972 kb on + strand, within IAI47_04630 at 975.972 kb on + strand, within IAI47_04630 at 975.973 kb on - strand, within IAI47_04630 at 975.973 kb on - strand, within IAI47_04630 at 975.973 kb on - strand, within IAI47_04630 at 976.188 kb on + strand at 976.205 kb on + strand, within IAI47_04635 at 976.205 kb on + strand, within IAI47_04635 at 976.206 kb on - strand, within IAI47_04635 at 976.206 kb on - strand, within IAI47_04635 at 976.210 kb on - strand, within IAI47_04635 at 976.210 kb on - strand, within IAI47_04635 at 976.210 kb on - strand, within IAI47_04635 at 976.210 kb on - strand, within IAI47_04635
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 973,292 + IAI47_04615 0.47 -1.8 973,292 + IAI47_04615 0.47 +2.0 973,293 - IAI47_04615 0.48 -0.3 973,334 + IAI47_04615 0.56 +0.4 973,334 + IAI47_04615 0.56 +0.2 973,334 + IAI47_04615 0.56 +0.4 973,334 + IAI47_04615 0.56 -1.1 973,334 + IAI47_04615 0.56 +4.1 973,334 + IAI47_04615 0.56 +1.3 973,335 - IAI47_04615 0.56 -1.6 973,335 - IAI47_04615 0.56 -0.4 973,335 - IAI47_04615 0.56 +2.1 973,335 - IAI47_04615 0.56 -1.1 973,335 - IAI47_04615 0.56 -0.4 973,335 - IAI47_04615 0.56 -0.7 973,335 - IAI47_04615 0.56 -0.2 973,340 + IAI47_04615 0.57 -0.1 973,340 + IAI47_04615 0.57 -0.2 973,340 + IAI47_04615 0.57 -0.8 973,340 + IAI47_04615 0.57 -0.9 973,341 - IAI47_04615 0.57 +1.6 973,341 - IAI47_04615 0.57 +0.0 973,341 - IAI47_04615 0.57 +0.3 973,341 - IAI47_04615 0.57 -0.7 973,341 - IAI47_04615 0.57 -0.3 973,341 - IAI47_04615 0.57 -0.3 973,341 - IAI47_04615 0.57 -1.0 973,341 - IAI47_04615 0.57 +1.7 973,341 - IAI47_04615 0.57 -1.5 973,370 + IAI47_04615 0.63 +0.4 973,371 - IAI47_04615 0.64 -0.6 973,371 - IAI47_04615 0.64 +1.1 973,378 + IAI47_04615 0.65 +0.6 973,378 + IAI47_04615 0.65 -0.6 973,378 + IAI47_04615 0.65 -0.4 973,379 - IAI47_04615 0.65 +1.9 973,379 - IAI47_04615 0.65 -0.9 973,379 - IAI47_04615 0.65 +0.2 973,379 - IAI47_04615 0.65 -0.6 973,379 - IAI47_04615 0.65 -1.1 973,379 - IAI47_04615 0.65 -1.6 973,452 + IAI47_04615 0.80 -0.7 973,453 - IAI47_04615 0.80 +2.4 973,453 - IAI47_04615 0.80 -1.6 973,453 - IAI47_04615 0.80 -0.4 973,453 - IAI47_04615 0.80 -0.0 973,453 - IAI47_04615 0.80 -0.5 973,453 - IAI47_04615 0.80 +0.8 973,509 + +0.4 973,560 + +0.9 973,560 + +0.1 973,560 + -1.5 973,560 + -0.9 973,560 + +0.0 973,560 + +0.7 973,561 - +0.9 973,561 - -0.4 973,561 - -0.4 973,561 - +1.5 973,561 - -0.4 973,565 + +1.2 973,565 + +1.4 973,566 - -1.6 973,566 - +2.4 973,591 + -0.8 973,591 + -0.1 973,614 + -0.3 973,614 + -1.0 973,614 + -2.0 973,614 + -0.4 973,614 + -0.7 973,614 + -0.1 973,614 + -0.0 973,615 - 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IAI47_04620 0.15 -1.2 973,737 + IAI47_04620 0.18 -1.6 973,737 + IAI47_04620 0.18 +2.5 973,737 + IAI47_04620 0.18 +2.5 973,737 + IAI47_04620 0.18 +0.1 973,737 + IAI47_04620 0.18 +1.3 973,737 + IAI47_04620 0.18 +0.5 973,738 - IAI47_04620 0.18 +0.6 973,738 - IAI47_04620 0.18 +1.7 973,738 - IAI47_04620 0.18 -0.1 973,738 - IAI47_04620 0.18 -0.4 973,738 - IAI47_04620 0.18 -1.1 973,738 - IAI47_04620 0.18 +0.4 973,738 - IAI47_04620 0.18 -0.3 973,738 - IAI47_04620 0.18 -1.2 973,770 + IAI47_04620 0.31 +0.6 973,835 + IAI47_04620 0.58 +1.4 973,835 + IAI47_04620 0.58 -1.3 973,835 + IAI47_04620 0.58 +0.1 973,835 + IAI47_04620 0.58 +0.1 973,836 - IAI47_04620 0.58 +1.1 973,851 + IAI47_04620 0.64 -1.1 973,852 - IAI47_04620 0.65 -1.6 973,876 - IAI47_04620 0.74 -2.4 973,892 + IAI47_04620 0.81 -1.3 973,892 + IAI47_04620 0.81 -0.3 973,892 + IAI47_04620 0.81 +0.3 973,893 - IAI47_04620 0.81 -0.3 973,893 - IAI47_04620 0.81 +1.1 973,893 - IAI47_04620 0.81 +0.4 973,893 - IAI47_04620 0.81 +0.6 973,910 + IAI47_04620 0.88 -0.2 973,910 + IAI47_04620 0.88 -0.9 973,911 - 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Or see this region's nucleotide sequence