Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01250 and IAI47_01255 are separated by 54 nucleotides IAI47_01255 and IAI47_01260 are separated by 38 nucleotides
IAI47_01250: IAI47_01250 - two-component system sensor histidine kinase KdbD, at 268,634 to 271,309
_01250
IAI47_01255: IAI47_01255 - TIGR00645 family protein, at 271,364 to 271,861
_01255
IAI47_01260: IAI47_01260 - LysR family transcriptional regulator, at 271,900 to 272,868
_01260
Position (kb) 271
272 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 270.394 kb on + strand, within IAI47_01250 at 270.394 kb on + strand, within IAI47_01250 at 270.395 kb on - strand, within IAI47_01250 at 270.395 kb on - strand, within IAI47_01250 at 270.414 kb on - strand, within IAI47_01250 at 270.456 kb on + strand, within IAI47_01250 at 270.457 kb on - strand, within IAI47_01250 at 270.527 kb on - strand, within IAI47_01250 at 270.666 kb on + strand, within IAI47_01250 at 270.667 kb on - strand, within IAI47_01250 at 270.722 kb on + strand, within IAI47_01250 at 270.722 kb on + strand, within IAI47_01250 at 270.723 kb on - strand, within IAI47_01250 at 270.723 kb on - strand, within IAI47_01250 at 270.723 kb on - strand, within IAI47_01250 at 270.723 kb on - strand, within IAI47_01250 at 270.723 kb on - strand, within IAI47_01250 at 270.976 kb on + strand, within IAI47_01250 at 270.977 kb on - strand, within IAI47_01250 at 270.984 kb on + strand, within IAI47_01250 at 270.984 kb on + strand, within IAI47_01250 at 271.001 kb on + strand, within IAI47_01250 at 271.001 kb on + strand, within IAI47_01250 at 271.002 kb on - strand, within IAI47_01250 at 271.002 kb on - strand, within IAI47_01250 at 271.002 kb on - strand, within IAI47_01250 at 271.002 kb on - strand, within IAI47_01250 at 271.002 kb on - strand, within IAI47_01250 at 271.002 kb on - strand, within IAI47_01250 at 271.002 kb on - strand, within IAI47_01250 at 271.002 kb on - strand, within IAI47_01250 at 271.002 kb on - strand, within IAI47_01250 at 271.012 kb on + strand, within IAI47_01250 at 271.013 kb on - strand, within IAI47_01250 at 271.104 kb on + strand at 271.105 kb on - strand at 271.120 kb on + strand at 271.121 kb on - strand at 271.183 kb on + strand at 271.183 kb on + strand at 271.184 kb on - strand at 271.307 kb on + strand at 271.307 kb on + strand at 271.308 kb on - strand at 271.327 kb on + strand at 271.327 kb on + strand at 271.327 kb on + strand at 271.327 kb on + strand at 271.327 kb on + strand at 271.327 kb on + strand at 271.327 kb on + strand at 271.328 kb on - strand at 271.328 kb on - strand at 271.328 kb on - strand at 271.328 kb on - strand at 271.328 kb on - strand at 271.328 kb on - strand at 271.328 kb on - strand at 271.328 kb on - strand at 271.328 kb on - strand at 271.328 kb on - strand at 271.329 kb on + strand at 271.329 kb on + strand at 271.329 kb on + strand at 271.329 kb on + strand at 271.329 kb on + strand at 271.330 kb on - strand at 271.330 kb on - strand at 271.330 kb on - strand at 271.330 kb on - strand at 271.330 kb on - strand at 271.330 kb on - strand at 271.350 kb on - strand at 271.363 kb on + strand at 271.363 kb on + strand at 271.363 kb on + strand at 271.364 kb on - strand at 271.364 kb on - strand at 271.364 kb on - strand at 271.376 kb on - strand at 271.391 kb on + strand at 271.391 kb on + strand at 271.391 kb on + strand at 271.391 kb on + strand at 271.391 kb on + strand at 271.391 kb on + strand at 271.391 kb on + strand at 271.391 kb on + strand at 271.391 kb on + strand at 271.391 kb on + strand at 271.391 kb on + strand at 271.391 kb on + strand at 271.391 kb on + strand at 271.391 kb on + strand at 271.391 kb on + strand at 271.391 kb on + strand at 271.391 kb on + strand at 271.391 kb on + strand at 271.391 kb on + strand at 271.391 kb on + strand at 271.391 kb on + strand at 271.391 kb on + strand at 271.392 kb on - strand at 271.392 kb on - strand at 271.392 kb on - strand at 271.392 kb on - strand at 271.392 kb on - strand at 271.392 kb on - strand at 271.392 kb on - strand at 271.392 kb on - strand at 271.392 kb on - strand at 271.392 kb on - strand at 271.392 kb on - strand at 271.392 kb on - strand at 271.421 kb on + strand, within IAI47_01255 at 271.421 kb on + strand, within IAI47_01255 at 271.421 kb on + strand, within IAI47_01255 at 271.421 kb on + strand, within IAI47_01255 at 271.421 kb on + strand, within IAI47_01255 at 271.422 kb on - strand, within IAI47_01255 at 271.444 kb on - strand, within IAI47_01255 at 271.444 kb on - strand, within IAI47_01255 at 271.444 kb on - strand, within IAI47_01255 at 271.444 kb on - strand, within IAI47_01255 at 271.459 kb on + strand, within IAI47_01255 at 271.549 kb on + strand, within IAI47_01255 at 271.549 kb on + strand, within IAI47_01255 at 271.549 kb on + strand, within IAI47_01255 at 271.550 kb on - strand, within IAI47_01255 at 271.581 kb on + strand, within IAI47_01255 at 271.581 kb on + strand, within IAI47_01255 at 271.581 kb on + strand, within IAI47_01255 at 271.581 kb on + strand, within IAI47_01255 at 271.581 kb on + strand, within IAI47_01255 at 271.581 kb on + strand, within IAI47_01255 at 271.582 kb on - strand, within IAI47_01255 at 271.582 kb on - strand, within IAI47_01255 at 271.582 kb on - strand, within IAI47_01255 at 271.582 kb on - strand, within IAI47_01255 at 271.582 kb on - strand, within IAI47_01255 at 271.582 kb on - strand, within IAI47_01255 at 271.582 kb on - strand, within IAI47_01255 at 271.613 kb on - strand, within IAI47_01255 at 271.750 kb on + strand, within IAI47_01255 at 271.751 kb on - strand, within IAI47_01255 at 271.778 kb on + strand, within IAI47_01255 at 271.778 kb on + strand, within IAI47_01255 at 271.778 kb on + strand, within IAI47_01255 at 271.779 kb on - strand, within IAI47_01255 at 271.779 kb on - strand, within IAI47_01255 at 271.779 kb on - strand, within IAI47_01255 at 271.779 kb on - strand, within IAI47_01255 at 271.779 kb on - strand, within IAI47_01255 at 271.779 kb on - strand, within IAI47_01255 at 271.786 kb on + strand, within IAI47_01255 at 271.847 kb on + strand at 271.848 kb on - strand at 271.860 kb on - strand at 271.864 kb on + strand at 271.865 kb on - strand at 271.865 kb on - strand at 271.983 kb on + strand at 271.983 kb on + strand at 272.021 kb on + strand, within IAI47_01260 at 272.022 kb on - strand, within IAI47_01260 at 272.022 kb on - strand, within IAI47_01260 at 272.036 kb on + strand, within IAI47_01260 at 272.036 kb on + strand, within IAI47_01260 at 272.036 kb on + strand, within IAI47_01260 at 272.036 kb on + strand, within IAI47_01260 at 272.037 kb on - strand, within IAI47_01260 at 272.037 kb on - strand, within IAI47_01260 at 272.037 kb on - strand, within IAI47_01260 at 272.037 kb on - strand, within IAI47_01260 at 272.104 kb on + strand, within IAI47_01260 at 272.104 kb on + strand, within IAI47_01260 at 272.104 kb on + strand, within IAI47_01260 at 272.105 kb on - strand, within IAI47_01260 at 272.177 kb on + strand, within IAI47_01260 at 272.177 kb on + strand, within IAI47_01260 at 272.177 kb on + strand, within IAI47_01260 at 272.177 kb on + strand, within IAI47_01260 at 272.177 kb on + strand, within IAI47_01260 at 272.178 kb on - strand, within IAI47_01260 at 272.178 kb on - strand, within IAI47_01260 at 272.178 kb on - strand, within IAI47_01260 at 272.178 kb on - strand, within IAI47_01260 at 272.205 kb on + strand, within IAI47_01260 at 272.265 kb on - strand, within IAI47_01260 at 272.265 kb on - strand, within IAI47_01260 at 272.318 kb on - strand, within IAI47_01260 at 272.328 kb on - strand, within IAI47_01260 at 272.448 kb on + strand, within IAI47_01260 at 272.448 kb on + strand, within IAI47_01260 at 272.449 kb on - strand, within IAI47_01260 at 272.510 kb on + strand, within IAI47_01260 at 272.510 kb on + strand, within IAI47_01260 at 272.511 kb on - strand, within IAI47_01260 at 272.511 kb on - strand, within IAI47_01260 at 272.511 kb on - strand, within IAI47_01260 at 272.574 kb on + strand, within IAI47_01260 at 272.575 kb on - strand, within IAI47_01260 at 272.619 kb on + strand, within IAI47_01260 at 272.619 kb on + strand, within IAI47_01260 at 272.619 kb on + strand, within IAI47_01260 at 272.620 kb on - strand, within IAI47_01260 at 272.620 kb on - strand, within IAI47_01260 at 272.654 kb on + strand, within IAI47_01260 at 272.655 kb on - strand, within IAI47_01260 at 272.757 kb on + strand, within IAI47_01260 at 272.757 kb on + strand, within IAI47_01260 at 272.757 kb on + strand, within IAI47_01260 at 272.757 kb on + strand, within IAI47_01260 at 272.758 kb on - strand, within IAI47_01260 at 272.758 kb on - strand, within IAI47_01260 at 272.758 kb on - strand, within IAI47_01260 at 272.770 kb on - strand, within IAI47_01260 at 272.814 kb on + strand at 272.821 kb on - strand at 272.821 kb on - strand at 272.856 kb on + strand at 272.857 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 270,394 + IAI47_01250 0.66 +0.1 270,394 + IAI47_01250 0.66 -1.3 270,395 - IAI47_01250 0.66 +0.7 270,395 - IAI47_01250 0.66 +1.5 270,414 - IAI47_01250 0.67 +2.3 270,456 + IAI47_01250 0.68 +0.0 270,457 - IAI47_01250 0.68 -0.2 270,527 - IAI47_01250 0.71 +0.9 270,666 + IAI47_01250 0.76 +0.7 270,667 - IAI47_01250 0.76 -0.8 270,722 + IAI47_01250 0.78 +0.5 270,722 + IAI47_01250 0.78 +0.2 270,723 - IAI47_01250 0.78 -0.1 270,723 - IAI47_01250 0.78 -0.7 270,723 - IAI47_01250 0.78 -0.5 270,723 - IAI47_01250 0.78 +0.3 270,723 - IAI47_01250 0.78 +0.3 270,976 + IAI47_01250 0.88 -0.0 270,977 - IAI47_01250 0.88 -0.0 270,984 + IAI47_01250 0.88 +1.6 270,984 + IAI47_01250 0.88 +0.6 271,001 + IAI47_01250 0.88 -0.4 271,001 + IAI47_01250 0.88 -0.2 271,002 - IAI47_01250 0.88 -0.6 271,002 - IAI47_01250 0.88 -1.1 271,002 - IAI47_01250 0.88 +0.6 271,002 - IAI47_01250 0.88 -0.4 271,002 - IAI47_01250 0.88 +0.9 271,002 - IAI47_01250 0.88 +1.0 271,002 - IAI47_01250 0.88 -0.0 271,002 - IAI47_01250 0.88 +0.1 271,002 - IAI47_01250 0.88 +0.2 271,012 + IAI47_01250 0.89 +0.8 271,013 - IAI47_01250 0.89 +0.8 271,104 + +0.3 271,105 - -2.1 271,120 + -0.5 271,121 - -1.1 271,183 + +0.8 271,183 + +2.5 271,184 - +0.9 271,307 + +1.3 271,307 + -1.2 271,308 - -2.6 271,327 + +0.4 271,327 + +0.1 271,327 + -0.9 271,327 + +1.7 271,327 + -0.5 271,327 + -0.3 271,327 + +1.2 271,328 - -0.3 271,328 - -1.0 271,328 - -0.8 271,328 - -1.7 271,328 - -0.8 271,328 - -0.1 271,328 - -0.7 271,328 - +1.2 271,328 - -1.3 271,328 - +0.4 271,329 + -0.2 271,329 + +1.6 271,329 + -0.3 271,329 + +0.8 271,329 + -2.5 271,330 - +0.2 271,330 - +0.5 271,330 - -0.3 271,330 - -0.1 271,330 - -1.3 271,330 - -3.4 271,350 - -2.5 271,363 + -0.8 271,363 + -0.9 271,363 + +1.8 271,364 - +0.7 271,364 - -0.7 271,364 - -0.7 271,376 - +1.0 271,391 + -0.3 271,391 + -0.0 271,391 + +1.4 271,391 + +0.7 271,391 + -2.3 271,391 + +0.9 271,391 + +1.4 271,391 + +0.3 271,391 + +2.2 271,391 + +0.8 271,391 + +0.7 271,391 + -0.2 271,391 + -1.6 271,391 + +3.2 271,391 + -0.9 271,391 + -0.7 271,391 + -0.2 271,391 + +1.5 271,391 + +0.4 271,391 + -0.1 271,391 + -0.7 271,391 + +0.5 271,392 - -0.7 271,392 - -1.7 271,392 - -2.7 271,392 - -1.6 271,392 - +0.5 271,392 - -0.3 271,392 - -1.4 271,392 - -0.7 271,392 - +2.7 271,392 - -0.1 271,392 - -2.1 271,392 - +0.9 271,421 + IAI47_01255 0.11 -0.1 271,421 + IAI47_01255 0.11 -2.2 271,421 + IAI47_01255 0.11 -0.5 271,421 + IAI47_01255 0.11 -0.2 271,421 + IAI47_01255 0.11 +0.4 271,422 - IAI47_01255 0.12 -0.9 271,444 - IAI47_01255 0.16 +0.8 271,444 - IAI47_01255 0.16 -0.1 271,444 - IAI47_01255 0.16 +1.0 271,444 - IAI47_01255 0.16 +0.6 271,459 + IAI47_01255 0.19 +1.3 271,549 + IAI47_01255 0.37 -0.9 271,549 + IAI47_01255 0.37 -0.4 271,549 + IAI47_01255 0.37 +1.5 271,550 - IAI47_01255 0.37 -0.9 271,581 + IAI47_01255 0.44 -0.5 271,581 + IAI47_01255 0.44 +2.1 271,581 + IAI47_01255 0.44 -1.3 271,581 + IAI47_01255 0.44 -0.5 271,581 + IAI47_01255 0.44 -0.0 271,581 + IAI47_01255 0.44 +0.4 271,582 - IAI47_01255 0.44 -1.0 271,582 - IAI47_01255 0.44 -0.6 271,582 - IAI47_01255 0.44 -0.7 271,582 - IAI47_01255 0.44 -1.7 271,582 - IAI47_01255 0.44 -1.2 271,582 - IAI47_01255 0.44 -0.1 271,582 - IAI47_01255 0.44 -0.7 271,613 - IAI47_01255 0.50 -1.3 271,750 + IAI47_01255 0.78 +0.3 271,751 - IAI47_01255 0.78 +0.1 271,778 + IAI47_01255 0.83 -0.2 271,778 + IAI47_01255 0.83 -1.4 271,778 + IAI47_01255 0.83 -0.1 271,779 - IAI47_01255 0.83 -0.3 271,779 - IAI47_01255 0.83 -3.1 271,779 - IAI47_01255 0.83 -1.1 271,779 - IAI47_01255 0.83 +0.0 271,779 - IAI47_01255 0.83 +1.2 271,779 - IAI47_01255 0.83 +0.0 271,786 + IAI47_01255 0.85 +0.8 271,847 + -0.5 271,848 - +0.3 271,860 - +0.5 271,864 + -1.2 271,865 - +0.5 271,865 - +1.1 271,983 + +0.2 271,983 + +0.1 272,021 + IAI47_01260 0.12 -1.8 272,022 - IAI47_01260 0.13 -1.4 272,022 - IAI47_01260 0.13 -0.4 272,036 + IAI47_01260 0.14 -0.7 272,036 + IAI47_01260 0.14 -0.7 272,036 + IAI47_01260 0.14 +0.5 272,036 + IAI47_01260 0.14 +0.9 272,037 - IAI47_01260 0.14 -0.2 272,037 - IAI47_01260 0.14 -0.3 272,037 - IAI47_01260 0.14 +1.5 272,037 - IAI47_01260 0.14 -0.4 272,104 + IAI47_01260 0.21 -0.3 272,104 + IAI47_01260 0.21 +1.8 272,104 + IAI47_01260 0.21 -0.5 272,105 - IAI47_01260 0.21 -1.7 272,177 + IAI47_01260 0.29 -1.6 272,177 + IAI47_01260 0.29 +0.3 272,177 + IAI47_01260 0.29 +1.2 272,177 + IAI47_01260 0.29 +0.1 272,177 + IAI47_01260 0.29 -1.5 272,178 - IAI47_01260 0.29 -0.7 272,178 - IAI47_01260 0.29 -1.9 272,178 - IAI47_01260 0.29 +0.8 272,178 - IAI47_01260 0.29 -0.8 272,205 + IAI47_01260 0.31 +1.8 272,265 - IAI47_01260 0.38 +1.5 272,265 - IAI47_01260 0.38 +0.7 272,318 - IAI47_01260 0.43 +1.1 272,328 - IAI47_01260 0.44 +0.5 272,448 + IAI47_01260 0.57 -1.7 272,448 + IAI47_01260 0.57 -0.6 272,449 - IAI47_01260 0.57 -1.2 272,510 + IAI47_01260 0.63 -0.5 272,510 + IAI47_01260 0.63 +0.0 272,511 - IAI47_01260 0.63 -3.2 272,511 - IAI47_01260 0.63 -0.3 272,511 - IAI47_01260 0.63 -0.9 272,574 + IAI47_01260 0.70 +1.9 272,575 - IAI47_01260 0.70 -0.8 272,619 + IAI47_01260 0.74 +0.2 272,619 + IAI47_01260 0.74 +0.7 272,619 + IAI47_01260 0.74 -1.6 272,620 - IAI47_01260 0.74 +0.9 272,620 - IAI47_01260 0.74 -0.1 272,654 + IAI47_01260 0.78 -0.2 272,655 - IAI47_01260 0.78 -1.6 272,757 + IAI47_01260 0.88 +0.8 272,757 + IAI47_01260 0.88 -1.7 272,757 + IAI47_01260 0.88 +0.6 272,757 + IAI47_01260 0.88 -0.6 272,758 - IAI47_01260 0.89 +2.2 272,758 - IAI47_01260 0.89 -1.6 272,758 - IAI47_01260 0.89 -1.3 272,770 - IAI47_01260 0.90 +0.4 272,814 + +0.2 272,821 - -0.5 272,821 - +0.6 272,856 + -2.3 272,857 - +2.1
Or see this region's nucleotide sequence