Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20025 and IAI47_20030 are separated by 10 nucleotides IAI47_20030 and IAI47_20035 are separated by 10 nucleotides IAI47_20035 and IAI47_20040 are separated by 9 nucleotides
IAI47_20025: IAI47_20025 - LLM class flavin-dependent oxidoreductase, at 237,589 to 238,902
_20025
IAI47_20030: IAI47_20030 - ABC transporter substrate-binding protein, at 238,913 to 239,854
_20030
IAI47_20035: IAI47_20035 - GNAT family N-acetyltransferase, at 239,865 to 240,377
_20035
IAI47_20040: IAI47_20040 - amino acid ABC transporter permease, at 240,387 to 241,313
_20040
Position (kb) 238
239
240 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 238.048 kb on + strand, within IAI47_20025 at 238.048 kb on + strand, within IAI47_20025 at 238.048 kb on + strand, within IAI47_20025 at 238.049 kb on - strand, within IAI47_20025 at 238.049 kb on - strand, within IAI47_20025 at 238.049 kb on - strand, within IAI47_20025 at 238.049 kb on - strand, within IAI47_20025 at 238.142 kb on + strand, within IAI47_20025 at 238.142 kb on + strand, within IAI47_20025 at 238.143 kb on - strand, within IAI47_20025 at 238.143 kb on - strand, within IAI47_20025 at 238.146 kb on + strand, within IAI47_20025 at 238.146 kb on + strand, within IAI47_20025 at 238.146 kb on + strand, within IAI47_20025 at 238.146 kb on + strand, within IAI47_20025 at 238.146 kb on + strand, within IAI47_20025 at 238.146 kb on + strand, within IAI47_20025 at 238.146 kb on + strand, within IAI47_20025 at 238.147 kb on - strand, within IAI47_20025 at 238.147 kb on - strand, within IAI47_20025 at 238.147 kb on - strand, within IAI47_20025 at 238.147 kb on - strand, within IAI47_20025 at 238.225 kb on - strand, within IAI47_20025 at 238.225 kb on - strand, within IAI47_20025 at 238.463 kb on + strand, within IAI47_20025 at 238.464 kb on - strand, within IAI47_20025 at 238.464 kb on - strand, within IAI47_20025 at 238.486 kb on + strand, within IAI47_20025 at 238.486 kb on + strand, within IAI47_20025 at 238.486 kb on + strand, within IAI47_20025 at 238.486 kb on + strand, within IAI47_20025 at 238.487 kb on - strand, within IAI47_20025 at 238.534 kb on + strand, within IAI47_20025 at 238.534 kb on + strand, within IAI47_20025 at 238.535 kb on - strand, within IAI47_20025 at 238.562 kb on + strand, within IAI47_20025 at 238.562 kb on + strand, within IAI47_20025 at 238.562 kb on + strand, within IAI47_20025 at 238.562 kb on + strand, within IAI47_20025 at 238.562 kb on + strand, within IAI47_20025 at 238.562 kb on + strand, within IAI47_20025 at 238.562 kb on + strand, within IAI47_20025 at 238.563 kb on - strand, within IAI47_20025 at 238.563 kb on - strand, within IAI47_20025 at 238.563 kb on - strand, within IAI47_20025 at 238.563 kb on - strand, within IAI47_20025 at 238.563 kb on - strand, within IAI47_20025 at 238.759 kb on - strand, within IAI47_20025 at 238.901 kb on - strand at 238.901 kb on - strand at 238.901 kb on - strand at 238.945 kb on + strand at 238.945 kb on + strand at 238.945 kb on + strand at 238.945 kb on + strand at 238.946 kb on - strand at 238.946 kb on - strand at 238.981 kb on + strand at 238.982 kb on - strand at 238.982 kb on - strand at 238.994 kb on + strand at 238.994 kb on + strand at 238.994 kb on + strand at 238.995 kb on - strand at 239.041 kb on + strand, within IAI47_20030 at 239.042 kb on - strand, within IAI47_20030 at 239.110 kb on + strand, within IAI47_20030 at 239.288 kb on + strand, within IAI47_20030 at 239.288 kb on + strand, within IAI47_20030 at 239.288 kb on + strand, within IAI47_20030 at 239.289 kb on - strand, within IAI47_20030 at 239.289 kb on - strand, within IAI47_20030 at 239.289 kb on - strand, within IAI47_20030 at 239.289 kb on - strand, within IAI47_20030 at 239.289 kb on - strand, within IAI47_20030 at 239.308 kb on + strand, within IAI47_20030 at 239.350 kb on + strand, within IAI47_20030 at 239.351 kb on - strand, within IAI47_20030 at 239.351 kb on - strand, within IAI47_20030 at 239.354 kb on + strand, within IAI47_20030 at 239.355 kb on - strand, within IAI47_20030 at 239.413 kb on + strand, within IAI47_20030 at 239.515 kb on - strand, within IAI47_20030 at 239.515 kb on - strand, within IAI47_20030 at 239.515 kb on - strand, within IAI47_20030 at 239.515 kb on - strand, within IAI47_20030 at 239.524 kb on + strand, within IAI47_20030 at 239.524 kb on + strand, within IAI47_20030 at 239.534 kb on + strand, within IAI47_20030 at 239.535 kb on - strand, within IAI47_20030 at 239.591 kb on + strand, within IAI47_20030 at 239.591 kb on + strand, within IAI47_20030 at 239.591 kb on + strand, within IAI47_20030 at 239.591 kb on + strand, within IAI47_20030 at 239.591 kb on + strand, within IAI47_20030 at 239.591 kb on + strand, within IAI47_20030 at 239.591 kb on + strand, within IAI47_20030 at 239.591 kb on + strand, within IAI47_20030 at 239.591 kb on + strand, within IAI47_20030 at 239.592 kb on - strand, within IAI47_20030 at 239.592 kb on - strand, within IAI47_20030 at 239.639 kb on - strand, within IAI47_20030 at 239.772 kb on - strand at 239.772 kb on - strand at 239.852 kb on + strand at 239.852 kb on + strand at 239.933 kb on - strand, within IAI47_20035 at 239.943 kb on + strand, within IAI47_20035 at 239.955 kb on + strand, within IAI47_20035 at 239.956 kb on - strand, within IAI47_20035 at 239.956 kb on - strand, within IAI47_20035 at 239.964 kb on + strand, within IAI47_20035 at 239.964 kb on + strand, within IAI47_20035 at 239.978 kb on + strand, within IAI47_20035 at 239.979 kb on - strand, within IAI47_20035 at 239.979 kb on - strand, within IAI47_20035 at 239.979 kb on - strand, within IAI47_20035 at 239.979 kb on - strand, within IAI47_20035 at 240.004 kb on - strand, within IAI47_20035 at 240.004 kb on - strand, within IAI47_20035 at 240.004 kb on - strand, within IAI47_20035 at 240.026 kb on + strand, within IAI47_20035 at 240.026 kb on + strand, within IAI47_20035 at 240.026 kb on + strand, within IAI47_20035 at 240.026 kb on + strand, within IAI47_20035 at 240.027 kb on - strand, within IAI47_20035 at 240.027 kb on - strand, within IAI47_20035 at 240.027 kb on - strand, within IAI47_20035 at 240.027 kb on - strand, within IAI47_20035 at 240.027 kb on - strand, within IAI47_20035 at 240.053 kb on + strand, within IAI47_20035 at 240.069 kb on + strand, within IAI47_20035 at 240.070 kb on - strand, within IAI47_20035 at 240.070 kb on - strand, within IAI47_20035 at 240.070 kb on - strand, within IAI47_20035 at 240.108 kb on - strand, within IAI47_20035 at 240.108 kb on - strand, within IAI47_20035 at 240.246 kb on + strand, within IAI47_20035 at 240.250 kb on - strand, within IAI47_20035 at 240.335 kb on + strand at 240.336 kb on - strand at 240.339 kb on - strand at 240.354 kb on + strand at 240.357 kb on - strand at 240.375 kb on + strand at 240.375 kb on + strand at 240.375 kb on + strand at 240.376 kb on - strand at 240.376 kb on - strand at 240.376 kb on - strand at 240.406 kb on + strand at 240.406 kb on + strand at 240.406 kb on + strand at 240.406 kb on + strand at 240.406 kb on + strand at 240.407 kb on - strand at 240.464 kb on + strand at 240.464 kb on + strand at 240.465 kb on - strand at 240.466 kb on + strand at 240.466 kb on + strand at 240.466 kb on + strand at 240.598 kb on + strand, within IAI47_20040 at 240.598 kb on + strand, within IAI47_20040 at 240.598 kb on + strand, within IAI47_20040 at 240.598 kb on + strand, within IAI47_20040 at 240.598 kb on + strand, within IAI47_20040 at 240.599 kb on - strand, within IAI47_20040 at 240.599 kb on - strand, within IAI47_20040 at 240.599 kb on - strand, within IAI47_20040 at 240.678 kb on + strand, within IAI47_20040 at 240.678 kb on + strand, within IAI47_20040 at 240.678 kb on + strand, within IAI47_20040 at 240.678 kb on + strand, within IAI47_20040 at 240.678 kb on + strand, within IAI47_20040 at 240.680 kb on + strand, within IAI47_20040 at 240.680 kb on + strand, within IAI47_20040 at 240.680 kb on + strand, within IAI47_20040 at 240.680 kb on + strand, within IAI47_20040 at 240.680 kb on + strand, within IAI47_20040 at 240.681 kb on - strand, within IAI47_20040 at 240.681 kb on - strand, within IAI47_20040 at 240.681 kb on - strand, within IAI47_20040 at 240.723 kb on - strand, within IAI47_20040 at 240.723 kb on - strand, within IAI47_20040 at 240.731 kb on + strand, within IAI47_20040 at 240.732 kb on - strand, within IAI47_20040 at 240.741 kb on + strand, within IAI47_20040 at 240.741 kb on + strand, within IAI47_20040 at 240.741 kb on + strand, within IAI47_20040 at 240.741 kb on + strand, within IAI47_20040 at 240.747 kb on + strand, within IAI47_20040 at 240.747 kb on + strand, within IAI47_20040 at 240.798 kb on + strand, within IAI47_20040 at 240.798 kb on + strand, within IAI47_20040 at 240.814 kb on + strand, within IAI47_20040 at 240.815 kb on - strand, within IAI47_20040 at 240.815 kb on - strand, within IAI47_20040 at 240.815 kb on - strand, within IAI47_20040 at 240.815 kb on - strand, within IAI47_20040 at 240.815 kb on - strand, within IAI47_20040
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 238,048 + IAI47_20025 0.35 -1.1 238,048 + IAI47_20025 0.35 +1.6 238,048 + IAI47_20025 0.35 +0.7 238,049 - IAI47_20025 0.35 -0.5 238,049 - IAI47_20025 0.35 -1.2 238,049 - IAI47_20025 0.35 -0.9 238,049 - IAI47_20025 0.35 +0.1 238,142 + IAI47_20025 0.42 +0.3 238,142 + IAI47_20025 0.42 -1.1 238,143 - IAI47_20025 0.42 -0.1 238,143 - IAI47_20025 0.42 +2.0 238,146 + IAI47_20025 0.42 +0.9 238,146 + IAI47_20025 0.42 +2.2 238,146 + IAI47_20025 0.42 +2.4 238,146 + IAI47_20025 0.42 +0.3 238,146 + IAI47_20025 0.42 -0.7 238,146 + IAI47_20025 0.42 +0.2 238,146 + IAI47_20025 0.42 -1.2 238,147 - IAI47_20025 0.42 +3.9 238,147 - IAI47_20025 0.42 -0.1 238,147 - IAI47_20025 0.42 -0.3 238,147 - IAI47_20025 0.42 -0.3 238,225 - IAI47_20025 0.48 -0.8 238,225 - IAI47_20025 0.48 -1.1 238,463 + IAI47_20025 0.67 -0.4 238,464 - IAI47_20025 0.67 +0.5 238,464 - IAI47_20025 0.67 +2.6 238,486 + IAI47_20025 0.68 -0.7 238,486 + IAI47_20025 0.68 -0.8 238,486 + IAI47_20025 0.68 +2.1 238,486 + IAI47_20025 0.68 +0.5 238,487 - IAI47_20025 0.68 -0.6 238,534 + IAI47_20025 0.72 +0.8 238,534 + IAI47_20025 0.72 +1.4 238,535 - IAI47_20025 0.72 +0.2 238,562 + IAI47_20025 0.74 +0.9 238,562 + IAI47_20025 0.74 +1.0 238,562 + IAI47_20025 0.74 +1.4 238,562 + IAI47_20025 0.74 -1.7 238,562 + IAI47_20025 0.74 +0.5 238,562 + IAI47_20025 0.74 +2.7 238,562 + IAI47_20025 0.74 -1.4 238,563 - IAI47_20025 0.74 -0.1 238,563 - IAI47_20025 0.74 -1.3 238,563 - IAI47_20025 0.74 +2.1 238,563 - IAI47_20025 0.74 +0.7 238,563 - IAI47_20025 0.74 +0.1 238,759 - IAI47_20025 0.89 -1.8 238,901 - +0.2 238,901 - +1.7 238,901 - +1.1 238,945 + +1.3 238,945 + -0.7 238,945 + +1.0 238,945 + +0.0 238,946 - +2.2 238,946 - +0.0 238,981 + -2.0 238,982 - +1.2 238,982 - +0.2 238,994 + +0.9 238,994 + -0.3 238,994 + -0.1 238,995 - +1.2 239,041 + IAI47_20030 0.14 -1.3 239,042 - IAI47_20030 0.14 +1.0 239,110 + IAI47_20030 0.21 -0.9 239,288 + IAI47_20030 0.40 +1.2 239,288 + IAI47_20030 0.40 +0.2 239,288 + IAI47_20030 0.40 -0.0 239,289 - IAI47_20030 0.40 -1.0 239,289 - IAI47_20030 0.40 -2.1 239,289 - IAI47_20030 0.40 -1.0 239,289 - IAI47_20030 0.40 -1.1 239,289 - IAI47_20030 0.40 +0.2 239,308 + IAI47_20030 0.42 +0.1 239,350 + IAI47_20030 0.46 +0.7 239,351 - IAI47_20030 0.46 +0.2 239,351 - IAI47_20030 0.46 -0.2 239,354 + IAI47_20030 0.47 +0.5 239,355 - IAI47_20030 0.47 -0.3 239,413 + IAI47_20030 0.53 -0.8 239,515 - IAI47_20030 0.64 +0.3 239,515 - IAI47_20030 0.64 +2.5 239,515 - IAI47_20030 0.64 -1.0 239,515 - IAI47_20030 0.64 +0.9 239,524 + IAI47_20030 0.65 -0.7 239,524 + IAI47_20030 0.65 -0.0 239,534 + IAI47_20030 0.66 +1.1 239,535 - IAI47_20030 0.66 -0.7 239,591 + IAI47_20030 0.72 +3.1 239,591 + IAI47_20030 0.72 -1.3 239,591 + IAI47_20030 0.72 -1.5 239,591 + IAI47_20030 0.72 -0.6 239,591 + IAI47_20030 0.72 +0.2 239,591 + IAI47_20030 0.72 +0.7 239,591 + IAI47_20030 0.72 +0.7 239,591 + IAI47_20030 0.72 +0.9 239,591 + IAI47_20030 0.72 +0.6 239,592 - IAI47_20030 0.72 +0.7 239,592 - IAI47_20030 0.72 -0.2 239,639 - IAI47_20030 0.77 -0.7 239,772 - -0.9 239,772 - +1.1 239,852 + +2.7 239,852 + +1.2 239,933 - IAI47_20035 0.13 +1.3 239,943 + IAI47_20035 0.15 -1.0 239,955 + IAI47_20035 0.18 +0.4 239,956 - IAI47_20035 0.18 +0.1 239,956 - IAI47_20035 0.18 +1.1 239,964 + IAI47_20035 0.19 +0.4 239,964 + IAI47_20035 0.19 +0.1 239,978 + IAI47_20035 0.22 +0.2 239,979 - IAI47_20035 0.22 -0.0 239,979 - IAI47_20035 0.22 +0.3 239,979 - IAI47_20035 0.22 -0.8 239,979 - IAI47_20035 0.22 +1.1 240,004 - IAI47_20035 0.27 -0.4 240,004 - IAI47_20035 0.27 +0.2 240,004 - IAI47_20035 0.27 +1.4 240,026 + IAI47_20035 0.31 -1.1 240,026 + IAI47_20035 0.31 -0.3 240,026 + IAI47_20035 0.31 -2.1 240,026 + IAI47_20035 0.31 -0.3 240,027 - IAI47_20035 0.32 -1.2 240,027 - IAI47_20035 0.32 +1.0 240,027 - IAI47_20035 0.32 -0.1 240,027 - IAI47_20035 0.32 -1.7 240,027 - IAI47_20035 0.32 +0.9 240,053 + IAI47_20035 0.37 -1.2 240,069 + IAI47_20035 0.40 -0.1 240,070 - IAI47_20035 0.40 -1.5 240,070 - IAI47_20035 0.40 -1.8 240,070 - IAI47_20035 0.40 -2.1 240,108 - IAI47_20035 0.47 -1.7 240,108 - IAI47_20035 0.47 -0.3 240,246 + IAI47_20035 0.74 +0.9 240,250 - IAI47_20035 0.75 -0.3 240,335 + -1.0 240,336 - -1.7 240,339 - +0.1 240,354 + -1.4 240,357 - +0.7 240,375 + -1.1 240,375 + -0.4 240,375 + -1.6 240,376 - -0.3 240,376 - -0.2 240,376 - -0.3 240,406 + -1.2 240,406 + -0.1 240,406 + -0.4 240,406 + +0.8 240,406 + -0.8 240,407 - +0.4 240,464 + +1.7 240,464 + -1.2 240,465 - +0.7 240,466 + -0.7 240,466 + -1.2 240,466 + -0.1 240,598 + IAI47_20040 0.23 +1.3 240,598 + IAI47_20040 0.23 -1.5 240,598 + IAI47_20040 0.23 +3.2 240,598 + IAI47_20040 0.23 +0.3 240,598 + IAI47_20040 0.23 +0.1 240,599 - IAI47_20040 0.23 -1.8 240,599 - IAI47_20040 0.23 -0.5 240,599 - IAI47_20040 0.23 +0.7 240,678 + IAI47_20040 0.31 -0.3 240,678 + IAI47_20040 0.31 -0.3 240,678 + IAI47_20040 0.31 -0.7 240,678 + IAI47_20040 0.31 +1.4 240,678 + IAI47_20040 0.31 -0.1 240,680 + IAI47_20040 0.32 +0.2 240,680 + IAI47_20040 0.32 +0.7 240,680 + IAI47_20040 0.32 +1.0 240,680 + IAI47_20040 0.32 +0.4 240,680 + IAI47_20040 0.32 +0.5 240,681 - IAI47_20040 0.32 -0.1 240,681 - IAI47_20040 0.32 +0.2 240,681 - IAI47_20040 0.32 -1.0 240,723 - IAI47_20040 0.36 -1.8 240,723 - IAI47_20040 0.36 +1.7 240,731 + IAI47_20040 0.37 +0.1 240,732 - IAI47_20040 0.37 -0.2 240,741 + IAI47_20040 0.38 +0.9 240,741 + IAI47_20040 0.38 +0.7 240,741 + IAI47_20040 0.38 -0.5 240,741 + IAI47_20040 0.38 +0.8 240,747 + IAI47_20040 0.39 -0.3 240,747 + IAI47_20040 0.39 +1.4 240,798 + IAI47_20040 0.44 +0.7 240,798 + IAI47_20040 0.44 +3.5 240,814 + IAI47_20040 0.46 -1.5 240,815 - IAI47_20040 0.46 -1.8 240,815 - IAI47_20040 0.46 +0.4 240,815 - IAI47_20040 0.46 +0.1 240,815 - IAI47_20040 0.46 -2.1 240,815 - IAI47_20040 0.46 -0.5
Or see this region's nucleotide sequence