Strain Fitness in Pantoea sp. MT58 around IAI47_20020

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20015 and IAI47_20020 are separated by 19 nucleotidesIAI47_20020 and IAI47_20025 are separated by 80 nucleotides IAI47_20015: IAI47_20015 - MsnO8 family LLM class oxidoreductase, at 235,339 to 236,337 _20015 IAI47_20020: IAI47_20020 - amidohydrolase, at 236,357 to 237,508 _20020 IAI47_20025: IAI47_20025 - LLM class flavin-dependent oxidoreductase, at 237,589 to 238,902 _20025 Position (kb) 236 237 238Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 235.361 kb on + strandat 235.365 kb on + strandat 235.365 kb on + strandat 235.365 kb on + strandat 235.365 kb on + strandat 235.366 kb on - strandat 235.366 kb on - strandat 235.366 kb on - strandat 235.366 kb on - strandat 235.450 kb on + strand, within IAI47_20015at 235.450 kb on + strand, within IAI47_20015at 235.517 kb on + strand, within IAI47_20015at 235.517 kb on + strand, within IAI47_20015at 235.518 kb on - strand, within IAI47_20015at 235.518 kb on - strand, within IAI47_20015at 235.518 kb on - strand, within IAI47_20015at 235.518 kb on - strand, within IAI47_20015at 235.548 kb on + strand, within IAI47_20015at 235.548 kb on + strand, within IAI47_20015at 235.585 kb on + strand, within IAI47_20015at 235.585 kb on + strand, within IAI47_20015at 235.585 kb on + strand, within IAI47_20015at 235.586 kb on - strand, within IAI47_20015at 235.596 kb on + strand, within IAI47_20015at 235.596 kb on + strand, within IAI47_20015at 235.596 kb on + strand, within IAI47_20015at 235.596 kb on + strand, within IAI47_20015at 235.597 kb on - strand, within IAI47_20015at 235.597 kb on - strand, within IAI47_20015at 235.597 kb on - strand, within IAI47_20015at 235.597 kb on - strand, within IAI47_20015at 235.597 kb on - strand, within IAI47_20015at 235.644 kb on + strand, within IAI47_20015at 235.644 kb on + strand, within IAI47_20015at 235.659 kb on - strand, within IAI47_20015at 235.659 kb on - strand, within IAI47_20015at 235.680 kb on - strand, within IAI47_20015at 235.741 kb on - strand, within IAI47_20015at 235.741 kb on - strand, within IAI47_20015at 235.761 kb on + strand, within IAI47_20015at 235.762 kb on - strand, within IAI47_20015at 235.787 kb on - strand, within IAI47_20015at 235.806 kb on - strand, within IAI47_20015at 235.938 kb on - strand, within IAI47_20015at 235.952 kb on + strand, within IAI47_20015at 235.952 kb on + strand, within IAI47_20015at 235.953 kb on - strand, within IAI47_20015at 235.956 kb on + strand, within IAI47_20015at 235.957 kb on - strand, within IAI47_20015at 236.000 kb on + strand, within IAI47_20015at 236.001 kb on - strand, within IAI47_20015at 236.001 kb on - strand, within IAI47_20015at 236.125 kb on + strand, within IAI47_20015at 236.125 kb on + strand, within IAI47_20015at 236.125 kb on + strand, within IAI47_20015at 236.125 kb on + strand, within IAI47_20015at 236.125 kb on + strand, within IAI47_20015at 236.125 kb on + strand, within IAI47_20015at 236.126 kb on - strand, within IAI47_20015at 236.126 kb on - strand, within IAI47_20015at 236.152 kb on + strand, within IAI47_20015at 236.152 kb on + strand, within IAI47_20015at 236.159 kb on + strand, within IAI47_20015at 236.160 kb on - strand, within IAI47_20015at 236.160 kb on - strand, within IAI47_20015at 236.183 kb on + strand, within IAI47_20015at 236.183 kb on + strand, within IAI47_20015at 236.183 kb on + strand, within IAI47_20015at 236.184 kb on - strand, within IAI47_20015at 236.232 kb on + strand, within IAI47_20015at 236.233 kb on - strand, within IAI47_20015at 236.233 kb on - strand, within IAI47_20015at 236.313 kb on + strandat 236.401 kb on + strandat 236.401 kb on + strandat 236.401 kb on + strandat 236.401 kb on + strandat 236.401 kb on + strandat 236.401 kb on + strandat 236.402 kb on - strandat 236.402 kb on - strandat 236.402 kb on - strandat 236.402 kb on - strandat 236.402 kb on - strandat 236.402 kb on - strandat 236.700 kb on + strand, within IAI47_20020at 236.700 kb on + strand, within IAI47_20020at 236.701 kb on - strand, within IAI47_20020at 236.701 kb on - strand, within IAI47_20020at 236.712 kb on + strand, within IAI47_20020at 236.716 kb on + strand, within IAI47_20020at 236.716 kb on + strand, within IAI47_20020at 236.716 kb on + strand, within IAI47_20020at 236.716 kb on + strand, within IAI47_20020at 236.716 kb on + strand, within IAI47_20020at 236.717 kb on - strand, within IAI47_20020at 236.717 kb on - strand, within IAI47_20020at 236.717 kb on - strand, within IAI47_20020at 236.717 kb on - strand, within IAI47_20020at 236.717 kb on - strand, within IAI47_20020at 236.764 kb on + strand, within IAI47_20020at 236.764 kb on + strand, within IAI47_20020at 236.765 kb on - strand, within IAI47_20020at 236.778 kb on + strand, within IAI47_20020at 236.779 kb on - strand, within IAI47_20020at 236.779 kb on - strand, within IAI47_20020at 236.790 kb on + strand, within IAI47_20020at 236.790 kb on + strand, within IAI47_20020at 236.790 kb on + strand, within IAI47_20020at 236.790 kb on + strand, within IAI47_20020at 236.791 kb on - strand, within IAI47_20020at 236.791 kb on - strand, within IAI47_20020at 236.864 kb on + strand, within IAI47_20020at 236.872 kb on + strand, within IAI47_20020at 236.872 kb on + strand, within IAI47_20020at 236.884 kb on + strand, within IAI47_20020at 236.884 kb on + strand, within IAI47_20020at 236.888 kb on - strand, within IAI47_20020at 237.028 kb on + strand, within IAI47_20020at 237.028 kb on + strand, within IAI47_20020at 237.029 kb on - strand, within IAI47_20020at 237.031 kb on + strand, within IAI47_20020at 237.032 kb on - strand, within IAI47_20020at 237.032 kb on - strand, within IAI47_20020at 237.032 kb on - strand, within IAI47_20020at 237.032 kb on - strand, within IAI47_20020at 237.032 kb on - strand, within IAI47_20020at 237.066 kb on + strand, within IAI47_20020at 237.111 kb on + strand, within IAI47_20020at 237.112 kb on - strand, within IAI47_20020at 237.112 kb on - strand, within IAI47_20020at 237.326 kb on + strand, within IAI47_20020at 237.326 kb on + strand, within IAI47_20020at 237.438 kb on - strandat 237.438 kb on - strandat 237.438 kb on - strandat 237.475 kb on + strandat 237.476 kb on - strandat 237.565 kb on + strandat 237.565 kb on + strandat 237.565 kb on + strandat 237.566 kb on - strandat 237.618 kb on + strandat 237.619 kb on - strandat 237.717 kb on + strandat 237.768 kb on + strand, within IAI47_20025at 237.768 kb on + strand, within IAI47_20025at 237.768 kb on + strand, within IAI47_20025at 237.769 kb on - strand, within IAI47_20025at 237.769 kb on - strand, within IAI47_20025at 237.771 kb on + strand, within IAI47_20025at 237.772 kb on - strand, within IAI47_20025at 237.883 kb on + strand, within IAI47_20025at 237.883 kb on + strand, within IAI47_20025at 237.884 kb on - strand, within IAI47_20025at 237.884 kb on - strand, within IAI47_20025at 237.884 kb on - strand, within IAI47_20025at 237.884 kb on - strand, within IAI47_20025at 238.048 kb on + strand, within IAI47_20025at 238.048 kb on + strand, within IAI47_20025at 238.048 kb on + strand, within IAI47_20025at 238.049 kb on - strand, within IAI47_20025at 238.049 kb on - strand, within IAI47_20025at 238.049 kb on - strand, within IAI47_20025at 238.049 kb on - strand, within IAI47_20025at 238.142 kb on + strand, within IAI47_20025at 238.142 kb on + strand, within IAI47_20025at 238.143 kb on - strand, within IAI47_20025at 238.143 kb on - strand, within IAI47_20025at 238.146 kb on + strand, within IAI47_20025at 238.146 kb on + strand, within IAI47_20025at 238.146 kb on + strand, within IAI47_20025at 238.146 kb on + strand, within IAI47_20025at 238.146 kb on + strand, within IAI47_20025at 238.146 kb on + strand, within IAI47_20025at 238.146 kb on + strand, within IAI47_20025at 238.147 kb on - strand, within IAI47_20025at 238.147 kb on - strand, within IAI47_20025at 238.147 kb on - strand, within IAI47_20025at 238.147 kb on - strand, within IAI47_20025at 238.225 kb on - strand, within IAI47_20025at 238.225 kb on - strand, within IAI47_20025at 238.463 kb on + strand, within IAI47_20025at 238.464 kb on - strand, within IAI47_20025at 238.464 kb on - strand, within IAI47_20025at 238.486 kb on + strand, within IAI47_20025at 238.486 kb on + strand, within IAI47_20025at 238.486 kb on + strand, within IAI47_20025at 238.486 kb on + strand, within IAI47_20025at 238.487 kb on - strand, within IAI47_20025

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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235,361 + +0.1
235,365 + +1.5
235,365 + -0.5
235,365 + -0.7
235,365 + -1.6
235,366 - -0.5
235,366 - +1.1
235,366 - -1.1
235,366 - -1.8
235,450 + IAI47_20015 0.11 -2.1
235,450 + IAI47_20015 0.11 +1.7
235,517 + IAI47_20015 0.18 -0.1
235,517 + IAI47_20015 0.18 +2.2
235,518 - IAI47_20015 0.18 +0.4
235,518 - IAI47_20015 0.18 -0.3
235,518 - IAI47_20015 0.18 -0.7
235,518 - IAI47_20015 0.18 +0.9
235,548 + IAI47_20015 0.21 +2.3
235,548 + IAI47_20015 0.21 -0.3
235,585 + IAI47_20015 0.25 +1.2
235,585 + IAI47_20015 0.25 -0.5
235,585 + IAI47_20015 0.25 +0.9
235,586 - IAI47_20015 0.25 -0.5
235,596 + IAI47_20015 0.26 +1.2
235,596 + IAI47_20015 0.26 -0.1
235,596 + IAI47_20015 0.26 +0.0
235,596 + IAI47_20015 0.26 -0.3
235,597 - IAI47_20015 0.26 +1.2
235,597 - IAI47_20015 0.26 +0.5
235,597 - IAI47_20015 0.26 +2.7
235,597 - IAI47_20015 0.26 +0.1
235,597 - IAI47_20015 0.26 +0.1
235,644 + IAI47_20015 0.31 -0.1
235,644 + IAI47_20015 0.31 +0.9
235,659 - IAI47_20015 0.32 -0.6
235,659 - IAI47_20015 0.32 -0.3
235,680 - IAI47_20015 0.34 +2.7
235,741 - IAI47_20015 0.40 -1.1
235,741 - IAI47_20015 0.40 -1.4
235,761 + IAI47_20015 0.42 -1.7
235,762 - IAI47_20015 0.42 +1.5
235,787 - IAI47_20015 0.45 +1.1
235,806 - IAI47_20015 0.47 +0.9
235,938 - IAI47_20015 0.60 +2.2
235,952 + IAI47_20015 0.61 -0.5
235,952 + IAI47_20015 0.61 +2.5
235,953 - IAI47_20015 0.61 +0.1
235,956 + IAI47_20015 0.62 -2.0
235,957 - IAI47_20015 0.62 +2.9
236,000 + IAI47_20015 0.66 -0.3
236,001 - IAI47_20015 0.66 +0.7
236,001 - IAI47_20015 0.66 -1.8
236,125 + IAI47_20015 0.79 +0.0
236,125 + IAI47_20015 0.79 -1.4
236,125 + IAI47_20015 0.79 -0.7
236,125 + IAI47_20015 0.79 -1.8
236,125 + IAI47_20015 0.79 +0.4
236,125 + IAI47_20015 0.79 +0.1
236,126 - IAI47_20015 0.79 +1.5
236,126 - IAI47_20015 0.79 +3.7
236,152 + IAI47_20015 0.81 -1.1
236,152 + IAI47_20015 0.81 +4.2
236,159 + IAI47_20015 0.82 +1.1
236,160 - IAI47_20015 0.82 +0.9
236,160 - IAI47_20015 0.82 -0.6
236,183 + IAI47_20015 0.84 +0.7
236,183 + IAI47_20015 0.84 +1.6
236,183 + IAI47_20015 0.84 +1.9
236,184 - IAI47_20015 0.85 +1.4
236,232 + IAI47_20015 0.89 +1.1
236,233 - IAI47_20015 0.89 -1.8
236,233 - IAI47_20015 0.89 +0.4
236,313 + -0.4
236,401 + +3.0
236,401 + +0.8
236,401 + -1.4
236,401 + +2.5
236,401 + +0.9
236,401 + -0.6
236,402 - -2.1
236,402 - -0.7
236,402 - -1.5
236,402 - -0.3
236,402 - +0.1
236,402 - +0.2
236,700 + IAI47_20020 0.30 -0.1
236,700 + IAI47_20020 0.30 -0.3
236,701 - IAI47_20020 0.30 -1.3
236,701 - IAI47_20020 0.30 +2.3
236,712 + IAI47_20020 0.31 -1.0
236,716 + IAI47_20020 0.31 +1.1
236,716 + IAI47_20020 0.31 -1.6
236,716 + IAI47_20020 0.31 +0.3
236,716 + IAI47_20020 0.31 -0.8
236,716 + IAI47_20020 0.31 -0.6
236,717 - IAI47_20020 0.31 +0.2
236,717 - IAI47_20020 0.31 -0.7
236,717 - IAI47_20020 0.31 -0.2
236,717 - IAI47_20020 0.31 +1.0
236,717 - IAI47_20020 0.31 +0.3
236,764 + IAI47_20020 0.35 +0.7
236,764 + IAI47_20020 0.35 -0.6
236,765 - IAI47_20020 0.35 -1.6
236,778 + IAI47_20020 0.37 +2.2
236,779 - IAI47_20020 0.37 -0.4
236,779 - IAI47_20020 0.37 +0.3
236,790 + IAI47_20020 0.38 -0.7
236,790 + IAI47_20020 0.38 +0.1
236,790 + IAI47_20020 0.38 -0.6
236,790 + IAI47_20020 0.38 -0.7
236,791 - IAI47_20020 0.38 +1.3
236,791 - IAI47_20020 0.38 +1.8
236,864 + IAI47_20020 0.44 -1.1
236,872 + IAI47_20020 0.45 +0.2
236,872 + IAI47_20020 0.45 +0.7
236,884 + IAI47_20020 0.46 -0.4
236,884 + IAI47_20020 0.46 +0.7
236,888 - IAI47_20020 0.46 -0.8
237,028 + IAI47_20020 0.58 +0.7
237,028 + IAI47_20020 0.58 -0.0
237,029 - IAI47_20020 0.58 +1.4
237,031 + IAI47_20020 0.59 +0.5
237,032 - IAI47_20020 0.59 +0.3
237,032 - IAI47_20020 0.59 +2.7
237,032 - IAI47_20020 0.59 +2.1
237,032 - IAI47_20020 0.59 +2.4
237,032 - IAI47_20020 0.59 +0.4
237,066 + IAI47_20020 0.62 -1.2
237,111 + IAI47_20020 0.65 +0.9
237,112 - IAI47_20020 0.66 +3.7
237,112 - IAI47_20020 0.66 -1.1
237,326 + IAI47_20020 0.84 -1.1
237,326 + IAI47_20020 0.84 -1.9
237,438 - +3.7
237,438 - -0.3
237,438 - -1.3
237,475 + +1.9
237,476 - -1.0
237,565 + +1.1
237,565 + -1.3
237,565 + +0.8
237,566 - -0.6
237,618 + +2.8
237,619 - -0.4
237,717 + +0.8
237,768 + IAI47_20025 0.14 +1.1
237,768 + IAI47_20025 0.14 +0.9
237,768 + IAI47_20025 0.14 -0.7
237,769 - IAI47_20025 0.14 +1.8
237,769 - IAI47_20025 0.14 +1.5
237,771 + IAI47_20025 0.14 +0.3
237,772 - IAI47_20025 0.14 +0.7
237,883 + IAI47_20025 0.22 -1.8
237,883 + IAI47_20025 0.22 +0.5
237,884 - IAI47_20025 0.22 +0.7
237,884 - IAI47_20025 0.22 +1.3
237,884 - IAI47_20025 0.22 -0.1
237,884 - IAI47_20025 0.22 +0.5
238,048 + IAI47_20025 0.35 -1.1
238,048 + IAI47_20025 0.35 +1.6
238,048 + IAI47_20025 0.35 +0.7
238,049 - IAI47_20025 0.35 -0.5
238,049 - IAI47_20025 0.35 -1.2
238,049 - IAI47_20025 0.35 -0.9
238,049 - IAI47_20025 0.35 +0.1
238,142 + IAI47_20025 0.42 +0.3
238,142 + IAI47_20025 0.42 -1.1
238,143 - IAI47_20025 0.42 -0.1
238,143 - IAI47_20025 0.42 +2.0
238,146 + IAI47_20025 0.42 +0.9
238,146 + IAI47_20025 0.42 +2.2
238,146 + IAI47_20025 0.42 +2.4
238,146 + IAI47_20025 0.42 +0.3
238,146 + IAI47_20025 0.42 -0.7
238,146 + IAI47_20025 0.42 +0.2
238,146 + IAI47_20025 0.42 -1.2
238,147 - IAI47_20025 0.42 +3.9
238,147 - IAI47_20025 0.42 -0.1
238,147 - IAI47_20025 0.42 -0.3
238,147 - IAI47_20025 0.42 -0.3
238,225 - IAI47_20025 0.48 -0.8
238,225 - IAI47_20025 0.48 -1.1
238,463 + IAI47_20025 0.67 -0.4
238,464 - IAI47_20025 0.67 +0.5
238,464 - IAI47_20025 0.67 +2.6
238,486 + IAI47_20025 0.68 -0.7
238,486 + IAI47_20025 0.68 -0.8
238,486 + IAI47_20025 0.68 +2.1
238,486 + IAI47_20025 0.68 +0.5
238,487 - IAI47_20025 0.68 -0.6

Or see this region's nucleotide sequence