Strain Fitness in Pantoea sp. MT58 around IAI47_15000

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,163,850	+		IAI47_14995	0.72	+0.4
3,163,851	-		IAI47_14995	0.72	-0.2
3,163,851	-		IAI47_14995	0.72	-0.9
3,163,851	-		IAI47_14995	0.72	-0.1
3,163,851	-		IAI47_14995	0.72	+0.4
3,163,851	-		IAI47_14995	0.72	+2.2
3,163,851	-		IAI47_14995	0.72	+1.2
3,163,851	-		IAI47_14995	0.72	-0.6
3,163,910	+		IAI47_14995	0.74	+4.2
3,163,910	+		IAI47_14995	0.74	+0.2
3,163,911	-		IAI47_14995	0.74	+1.2
3,163,938	-		IAI47_14995	0.75	-0.5
3,163,952	-		IAI47_14995	0.76	+2.4
3,163,967	+		IAI47_14995	0.76	+0.9
3,163,967	+		IAI47_14995	0.76	+0.3
3,163,967	+		IAI47_14995	0.76	-1.2
3,163,967	+		IAI47_14995	0.76	+1.4
3,163,968	-		IAI47_14995	0.76	+2.2
3,164,026	+		IAI47_14995	0.79	-1.9
3,164,027	-		IAI47_14995	0.79	+1.3
3,164,092	+				-0.4
3,164,092	+		IAI47_14995	0.81	-0.3
3,164,093	-		IAI47_14995	0.81	+1.1
3,164,093	-		IAI47_14995	0.81	-0.1
3,164,113	+		IAI47_14995	0.82	-0.6
3,164,113	+		IAI47_14995	0.82	+1.2
3,164,156	-		IAI47_14995	0.84	+0.7
3,164,156	-		IAI47_14995	0.84	+0.2
3,164,174	-		IAI47_14995	0.84	+0.8
3,164,200	+		IAI47_14995	0.85	+1.8
3,164,226	+		IAI47_14995	0.86	+0.1
3,164,226	+		IAI47_14995	0.86	-1.0
3,164,226	+		IAI47_14995	0.86	+1.6
3,164,227	-		IAI47_14995	0.86	-0.2
3,164,227	-		IAI47_14995	0.86	+3.0
3,164,227	-		IAI47_14995	0.86	+0.1
3,164,232	+		IAI47_14995	0.87	-0.2
3,164,232	+		IAI47_14995	0.87	+0.2
3,164,232	+		IAI47_14995	0.87	-0.5
3,164,232	+		IAI47_14995	0.87	+0.9
3,164,232	+		IAI47_14995	0.87	-0.8
3,164,232	+		IAI47_14995	0.87	+0.4
3,164,233	-		IAI47_14995	0.87	-0.8
3,164,233	-		IAI47_14995	0.87	+3.4
3,164,233	-		IAI47_14995	0.87	+1.9
3,164,242	-		IAI47_14995	0.87	+0.1
3,164,242	-		IAI47_14995	0.87	-1.3
3,164,242	-		IAI47_14995	0.87	+0.7
3,164,242	-		IAI47_14995	0.87	-0.8
3,164,242	-		IAI47_14995	0.87	+0.4
3,164,261	-		IAI47_14995	0.88	-0.1
3,164,331	+				+1.2
3,164,331	+				+0.1
3,164,349	-				+0.4
3,164,411	+				+0.3
3,164,412	-				-1.2
3,164,572	+				-1.2
3,164,572	+				-2.1
3,164,572	+				-0.9
3,164,582	+				+1.8
3,164,582	+				-0.2
3,164,582	+				-1.2
3,164,595	+				+0.1
3,164,595	+				+0.8
3,164,595	+				-0.9
3,164,596	-				+0.5
3,164,629	+				+0.3
3,164,630	-				-0.1
3,164,630	-				-0.2
3,164,630	-				+1.4
3,164,630	-				+1.0
3,164,653	+				-1.6
3,164,653	+				+0.9
3,164,666	+				-1.0
3,164,667	-				+1.6
3,164,691	-				-1.0
3,164,691	-				-0.2
3,164,691	-				+0.7
3,164,691	-				+1.2
3,164,715	+				+1.5
3,164,715	+				-1.3
3,164,715	+				+1.9
3,164,715	+				-0.7
3,164,715	+				-0.4
3,164,716	-				+0.4
3,164,719	+				-1.0
3,164,719	+				-2.0
3,164,719	+				+4.6
3,164,719	+				+0.6
3,164,720	-				-0.9
3,164,720	-				+0.2
3,164,720	-				+0.4
3,164,728	-				-0.6
3,164,728	-				-0.2
3,164,761	+				+2.6
3,164,761	+				-1.3
3,164,761	+				+1.0
3,164,761	+				+0.2
3,164,761	+				+1.5
3,164,761	+				+1.2
3,164,761	+				+1.8
3,164,762	-				-0.2
3,164,762	-				-1.1
3,164,762	-				-1.2
3,164,762	-				+0.8
3,164,762	-				+0.4
3,164,764	+				-0.9
3,164,765	-				-0.8
3,164,765	-				-0.4
3,164,765	-				+1.8
3,164,772	+				-0.8
3,164,772	+				-0.2
3,164,772	+				-0.1
3,164,772	+				+0.1
3,164,773	-				+1.7
3,164,794	+				+0.1
3,164,795	-				-0.4
3,164,834	+				-0.6
3,164,834	+				+4.3
3,164,835	-				-0.7
3,164,835	-				+0.2
3,164,855	+				+0.6
3,164,855	+				+1.1
3,164,855	+				+0.6
3,164,855	+				+2.2
3,164,855	+				-1.2
3,164,855	+				-1.2
3,164,856	-				+0.6
3,164,858	+				+1.5
3,164,858	+				-0.1
3,164,858	+				-0.6
3,164,858	+				+0.2
3,164,858	+				-1.8
3,164,859	-				-0.6
3,164,859	-				+1.8
3,164,859	-				+2.2
3,164,859	-				+0.3
3,164,859	-				+0.7
3,164,866	+		IAI47_15000	0.11	-0.1
3,164,867	-		IAI47_15000	0.11	-0.1
3,164,867	-		IAI47_15000	0.11	+0.2
3,164,890	+		IAI47_15000	0.15	+2.5
3,164,891	-		IAI47_15000	0.15	+0.4
3,164,891	-		IAI47_15000	0.15	+0.5
3,164,891	-		IAI47_15000	0.15	-0.9
3,164,891	-		IAI47_15000	0.15	+0.5
3,164,894	+		IAI47_15000	0.15	+0.5
3,164,894	+		IAI47_15000	0.15	+0.3
3,164,895	-		IAI47_15000	0.15	+2.5
3,164,909	-		IAI47_15000	0.18	+0.3
3,164,969	+		IAI47_15000	0.27	+1.3
3,164,978	+		IAI47_15000	0.28	+0.4
3,165,001	-		IAI47_15000	0.32	-0.7
3,165,017	+		IAI47_15000	0.34	+2.3
3,165,017	+		IAI47_15000	0.34	+3.5
3,165,017	+		IAI47_15000	0.34	-1.8
3,165,017	+		IAI47_15000	0.34	+0.5
3,165,018	-		IAI47_15000	0.34	+1.2
3,165,018	-		IAI47_15000	0.34	+0.7
3,165,018	-		IAI47_15000	0.34	-0.1
3,165,019	+		IAI47_15000	0.34	-2.5
3,165,020	-		IAI47_15000	0.35	-0.3
3,165,020	-		IAI47_15000	0.35	-0.7
3,165,020	-		IAI47_15000	0.35	-1.2
3,165,020	-		IAI47_15000	0.35	+0.4
3,165,041	-		IAI47_15000	0.38	+0.6
3,165,082	+		IAI47_15000	0.44	-0.2
3,165,083	-		IAI47_15000	0.44	+0.4
3,165,083	-		IAI47_15000	0.44	+1.2
3,165,083	-		IAI47_15000	0.44	+0.2
3,165,128	-		IAI47_15000	0.51	+0.2
3,165,128	-		IAI47_15000	0.51	+2.4
3,165,128	-		IAI47_15000	0.51	-1.0
3,165,128	-		IAI47_15000	0.51	+0.7
3,165,139	+		IAI47_15000	0.53	-0.9
3,165,140	-		IAI47_15000	0.53	+1.8
3,165,250	+		IAI47_15000	0.70	+0.9
3,165,250	+		IAI47_15000	0.70	+0.6
3,165,250	+		IAI47_15000	0.70	+0.1
3,165,251	-		IAI47_15000	0.70	-0.8
3,165,251	-		IAI47_15000	0.70	+0.8
3,165,251	-		IAI47_15000	0.70	-0.4
3,165,251	-		IAI47_15000	0.70	+0.2
3,165,279	+		IAI47_15000	0.74	-1.2
3,165,286	+		IAI47_15000	0.75	-0.6
3,165,286	+		IAI47_15000	0.75	+0.2
3,165,286	+		IAI47_15000	0.75	+1.1
3,165,286	+		IAI47_15000	0.75	-0.8
3,165,286	+		IAI47_15000	0.75	+2.8
3,165,287	-		IAI47_15000	0.76	+0.7
3,165,293	+		IAI47_15000	0.76	-0.6
3,165,293	+		IAI47_15000	0.76	-0.6
3,165,293	+		IAI47_15000	0.76	-1.9
3,165,293	+		IAI47_15000	0.76	+0.4
3,165,294	-		IAI47_15000	0.77	-0.7
3,165,294	-		IAI47_15000	0.77	-1.6
3,165,294	-		IAI47_15000	0.77	-0.1
3,165,294	-		IAI47_15000	0.77	+0.6
3,165,294	-		IAI47_15000	0.77	+0.8
3,165,294	-		IAI47_15000	0.77	+0.9
3,165,294	-		IAI47_15000	0.77	+0.8
3,165,294	-		IAI47_15000	0.77	+1.0
3,165,294	-		IAI47_15000	0.77	-1.5
3,165,347	+		IAI47_15000	0.85	+0.9
3,165,347	+		IAI47_15000	0.85	+0.3
3,165,347	+		IAI47_15000	0.85	-1.5
3,165,347	+		IAI47_15000	0.85	+0.3
3,165,403	+				-1.1
3,165,431	+				+0.1
3,165,432	-				-1.4
3,165,467	+				+0.8
3,165,467	+				-1.5
3,165,468	-				-0.0
3,165,468	-				+0.2
3,165,508	+				+3.3
3,165,508	+				-0.2
3,165,508	+				+1.4
3,165,508	+				+1.3
3,165,508	+				+1.9
3,165,508	+				-2.2
3,165,508	+				-2.8
3,165,508	+				-0.4
3,165,509	-				-0.2
3,165,509	-				+1.0
3,165,509	-				+0.1
3,165,509	-				+1.4
3,165,509	-				+2.1
3,165,509	-				+1.1
3,165,509	-				+0.7
3,165,509	-				-0.2
3,165,545	+				+0.8
3,165,547	+				-0.5
3,165,548	-				+0.2
3,165,568	-				-0.7
3,165,615	+				+0.0
3,165,615	+				-1.2
3,165,615	+				-0.9
3,165,615	+				+0.0
3,165,615	+				+0.5
3,165,615	+				+0.7
3,165,615	+				-1.1
3,165,615	+				+1.2
3,165,615	+				+1.2
3,165,615	+				+2.3
3,165,615	+				+0.2
3,165,615	+				+1.1
3,165,615	+				-1.6
3,165,616	-				+1.1
3,165,616	-				-1.7
3,165,616	-				+0.6
3,165,616	-				-1.2
3,165,616	-				-1.2
3,165,616	-				-1.7
3,165,616	-				-3.1
3,165,623	+				-0.4
3,165,639	-		IAI47_15005	0.13	+0.8
3,165,695	-		IAI47_15005	0.46	-0.8
3,165,738	+		IAI47_15005	0.71	-0.1
3,165,739	-		IAI47_15005	0.72	-0.3
3,165,804	+				-1.3
3,165,817	+				-0.9
3,165,817	+				+1.6
3,165,817	+				-0.1
3,165,817	+				-1.5
3,165,817	+				-1.1
3,165,817	+				+2.4
3,165,817	+				+1.9
3,165,817	+				+2.4
3,165,818	-				+1.7
3,165,818	-				+1.7
3,165,839	-				-0.1
3,165,851	-				-0.6
3,165,851	-				+0.1
3,165,851	-				-0.9
3,165,876	-				+0.8
3,165,926	+		IAI47_15010	0.17	-0.1
3,165,926	+		IAI47_15010	0.17	+0.2
3,165,926	+		IAI47_15010	0.17	+2.1
3,165,926	+		IAI47_15010	0.17	+0.2
3,165,927	-		IAI47_15010	0.18	+1.2
3,165,927	-		IAI47_15010	0.18	-1.5
3,165,928	+		IAI47_15010	0.18	-1.2
3,165,928	+		IAI47_15010	0.18	-2.2
3,165,928	+		IAI47_15010	0.18	+1.8
3,165,928	+		IAI47_15010	0.18	+0.3
3,165,928	+		IAI47_15010	0.18	-0.0
3,165,928	+		IAI47_15010	0.18	+0.9
3,165,928	+		IAI47_15010	0.18	+0.3
3,165,928	+		IAI47_15010	0.18	-0.4
3,165,929	-		IAI47_15010	0.18	-1.4
3,165,929	-		IAI47_15010	0.18	+0.1
3,165,929	-		IAI47_15010	0.18	+0.1
3,165,929	-		IAI47_15010	0.18	+0.9
3,165,929	-		IAI47_15010	0.18	+0.3
3,165,931	+		IAI47_15010	0.19	-0.1
3,165,931	+		IAI47_15010	0.19	-1.4
3,165,931	+		IAI47_15010	0.19	+0.9
3,165,932	-		IAI47_15010	0.20	-0.4
3,165,932	-		IAI47_15010	0.20	-1.4
3,165,932	-		IAI47_15010	0.20	+0.5
3,165,932	-		IAI47_15010	0.20	+0.3
3,165,940	+		IAI47_15010	0.23	+0.3
3,165,941	-		IAI47_15010	0.24	-0.4
3,165,941	-		IAI47_15010	0.24	+1.5
3,165,991	+		IAI47_15010	0.45	-1.5
3,165,991	+		IAI47_15010	0.45	+0.2
3,165,992	-		IAI47_15010	0.45	-1.1
3,165,992	-		IAI47_15010	0.45	-0.1
3,165,992	-		IAI47_15010	0.45	-2.1
3,166,012	+		IAI47_15010	0.54	-1.4
3,166,012	+		IAI47_15010	0.54	-0.6
3,166,013	-		IAI47_15010	0.54	-0.1
3,166,013	-		IAI47_15010	0.54	+1.1
3,166,013	-		IAI47_15010	0.54	-0.7
3,166,015	+		IAI47_15010	0.55	-1.5
3,166,016	-		IAI47_15010	0.56	-0.7
3,166,061	-		IAI47_15010	0.75	-0.9
3,166,089	+		IAI47_15010	0.87	+0.6
3,166,122	-				-0.1
3,166,122	-				+0.3
3,166,130	+				-0.1
3,166,289	+				+0.9
3,166,290	-				+2.3
3,166,290	-				+0.1
3,166,314	+				-1.5
3,166,368	-				+0.2
3,166,402	+				+0.6
3,166,402	+				+0.9
3,166,419	+				-2.2
3,166,419	+				-2.2
3,166,420	-				-0.3
3,166,424	+				-2.4
3,166,424	+				+1.1
3,166,424	+				-0.1
3,166,424	+				+2.2
3,166,424	+				-0.4
3,166,424	+				-0.2
3,166,424	+				+0.5
3,166,425	-				+0.9
3,166,425	-				+1.8
3,166,425	-				-1.0