Strain Fitness in Pantoea sp. MT58 around IAI47_05960

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,218,613	-		IAI47_05945	0.85	-0.4
1,218,615	+		IAI47_05945	0.85	-0.9
1,218,615	+		IAI47_05945	0.85	+0.8
1,218,615	+		IAI47_05945	0.85	-0.8
1,218,616	-		IAI47_05945	0.85	+2.0
1,218,616	-		IAI47_05945	0.85	+0.9
1,218,616	-		IAI47_05945	0.85	+0.9
1,218,616	-		IAI47_05945	0.85	+0.2
1,218,616	-		IAI47_05945	0.85	+0.6
1,218,641	-				-0.4
1,218,693	+				-1.7
1,218,693	+				-3.0
1,218,693	+				-1.4
1,218,693	+				-0.9
1,218,693	+				+0.3
1,218,693	+				-0.9
1,218,693	+				-1.0
1,218,694	-				+0.2
1,218,694	-				+0.6
1,218,871	+		IAI47_05950	0.51	-0.8
1,218,926	-		IAI47_05950	0.65	-0.7
1,218,926	-		IAI47_05950	0.65	+1.2
1,218,947	+		IAI47_05950	0.70	+0.3
1,218,947	+		IAI47_05950	0.70	-1.4
1,218,948	-		IAI47_05950	0.71	+0.5
1,218,948	-		IAI47_05950	0.71	-2.2
1,218,962	+		IAI47_05950	0.74	+2.3
1,218,978	+		IAI47_05950	0.78	+2.5
1,218,979	-		IAI47_05950	0.79	+0.8
1,218,986	+		IAI47_05950	0.80	-0.0
1,218,986	+		IAI47_05950	0.80	+0.8
1,218,986	+		IAI47_05950	0.80	-1.6
1,218,986	+		IAI47_05950	0.80	+0.1
1,218,987	-		IAI47_05950	0.81	-0.4
1,218,987	-		IAI47_05950	0.81	-0.2
1,218,995	+		IAI47_05950	0.83	-0.9
1,218,996	-		IAI47_05950	0.83	+1.6
1,219,058	+				+0.4
1,219,059	-				+0.6
1,219,059	-				-1.4
1,219,110	+		IAI47_05955	0.10	-0.1
1,219,110	+		IAI47_05955	0.10	+0.2
1,219,111	-		IAI47_05955	0.11	+0.3
1,219,156	+		IAI47_05955	0.19	-1.9
1,219,156	+		IAI47_05955	0.19	-0.2
1,219,156	+		IAI47_05955	0.19	+1.3
1,219,156	+		IAI47_05955	0.19	+1.5
1,219,156	+		IAI47_05955	0.19	+0.8
1,219,157	-		IAI47_05955	0.19	+1.3
1,219,269	-		IAI47_05955	0.40	+0.6
1,219,350	+		IAI47_05955	0.54	+0.9
1,219,372	+		IAI47_05955	0.58	-0.1
1,219,373	-		IAI47_05955	0.59	-0.8
1,219,452	+		IAI47_05955	0.73	-0.8
1,219,452	+		IAI47_05955	0.73	-0.6
1,219,453	-		IAI47_05955	0.73	-0.3
1,219,453	-		IAI47_05955	0.73	+0.1
1,219,506	+		IAI47_05955	0.83	-1.8
1,219,507	-		IAI47_05955	0.83	-0.1
1,219,537	+		IAI47_05955	0.89	-1.5
1,219,538	-		IAI47_05955	0.89	-1.2
1,219,538	-		IAI47_05955	0.89	+0.1
1,219,548	+				-0.6
1,219,548	+				+3.5
1,219,556	+				+1.0
1,219,556	+				-0.8
1,219,557	-				-1.2
1,219,557	-				+0.8
1,219,557	-				+0.5
1,219,557	-				+1.1
1,219,557	-				-0.2
1,219,557	-				+1.3
1,219,579	+				-0.9
1,219,579	+				-0.7
1,219,579	+				-1.4
1,219,579	+				-1.3
1,219,579	+				+1.9
1,219,580	-				-2.5
1,219,596	+				+1.2
1,219,596	+				+1.8
1,219,597	-				+0.3
1,219,601	+				-0.9
1,219,601	+				-0.9
1,219,601	+				-0.3
1,219,601	+				-0.2
1,219,601	+				-1.2
1,219,601	+				+0.6
1,219,601	+				+0.7
1,219,602	-				-1.3
1,219,602	-				-2.1
1,219,602	-				+0.8
1,219,602	-				+0.1
1,219,602	-				+0.2
1,219,615	+				-0.4
1,219,615	+				+0.6
1,219,615	+				-1.1
1,219,616	-				-0.6
1,219,616	-				-0.4
1,219,621	+				-0.6
1,219,622	-				-0.8
1,219,622	-				-0.9
1,219,676	+				+0.1
1,219,714	+				-0.4
1,219,714	+				-1.7
1,219,714	+				+0.4
1,219,715	-				+0.0
1,219,735	+		IAI47_05960	0.12	-1.2
1,219,735	+		IAI47_05960	0.12	-0.1
1,219,744	-		IAI47_05960	0.12	+0.8
1,219,744	-		IAI47_05960	0.12	-1.8
1,219,744	-		IAI47_05960	0.12	-0.3
1,219,795	-		IAI47_05960	0.17	-2.2
1,219,795	-		IAI47_05960	0.17	-0.4
1,219,812	+		IAI47_05960	0.18	+0.4
1,219,813	-		IAI47_05960	0.18	+0.7
1,219,813	-		IAI47_05960	0.18	-0.6
1,219,845	+		IAI47_05960	0.21	-0.6
1,219,845	+		IAI47_05960	0.21	+0.1
1,219,845	+		IAI47_05960	0.21	+0.7
1,219,845	+		IAI47_05960	0.21	-2.4
1,219,945	-		IAI47_05960	0.30	+0.8
1,219,991	+		IAI47_05960	0.34	-1.1
1,219,991	+		IAI47_05960	0.34	+0.5
1,219,992	-		IAI47_05960	0.34	-2.8
1,220,028	-		IAI47_05960	0.37	-1.9
1,220,035	+		IAI47_05960	0.38	-0.7
1,220,036	-		IAI47_05960	0.38	+0.5
1,220,036	-		IAI47_05960	0.38	+0.2
1,220,105	+		IAI47_05960	0.44	+0.7
1,220,105	+		IAI47_05960	0.44	-1.5
1,220,139	+		IAI47_05960	0.47	-1.5
1,220,139	+		IAI47_05960	0.47	-3.0
1,220,140	-		IAI47_05960	0.47	-3.1
1,220,140	-		IAI47_05960	0.47	-2.7
1,220,157	+		IAI47_05960	0.48	+0.2
1,220,158	-		IAI47_05960	0.49	-0.2
1,220,158	-		IAI47_05960	0.49	-1.0
1,220,195	+		IAI47_05960	0.52	+1.8
1,220,195	+		IAI47_05960	0.52	-2.0
1,220,195	+		IAI47_05960	0.52	-0.7
1,220,196	-		IAI47_05960	0.52	-0.4
1,220,256	+		IAI47_05960	0.57	+0.5
1,220,256	+		IAI47_05960	0.57	-0.5
1,220,257	-		IAI47_05960	0.57	-1.6
1,220,257	-		IAI47_05960	0.57	-0.9
1,220,257	-		IAI47_05960	0.57	+0.1
1,220,313	+		IAI47_05960	0.62	-0.0
1,220,313	+		IAI47_05960	0.62	-0.6
1,220,313	+		IAI47_05960	0.62	-0.8
1,220,313	+		IAI47_05960	0.62	+0.3
1,220,314	-		IAI47_05960	0.62	+0.0
1,220,314	-		IAI47_05960	0.62	-1.7
1,220,314	-		IAI47_05960	0.62	+0.2
1,220,314	-		IAI47_05960	0.62	-0.4
1,220,319	+		IAI47_05960	0.63	+2.8
1,220,319	+		IAI47_05960	0.63	-2.5
1,220,319	+		IAI47_05960	0.63	+2.1
1,220,319	+		IAI47_05960	0.63	-1.0
1,220,320	-		IAI47_05960	0.63	+0.8
1,220,320	-		IAI47_05960	0.63	-1.5
1,220,320	-		IAI47_05960	0.63	-0.3
1,220,322	+		IAI47_05960	0.63	-2.2
1,220,323	-		IAI47_05960	0.63	+0.4
1,220,356	+		IAI47_05960	0.66	-1.1
1,220,356	+		IAI47_05960	0.66	+1.0
1,220,357	-		IAI47_05960	0.66	+1.2
1,220,357	-		IAI47_05960	0.66	-1.3
1,220,364	-		IAI47_05960	0.66	-1.2
1,220,412	+		IAI47_05960	0.71	+1.2
1,220,412	+		IAI47_05960	0.71	+1.0
1,220,413	-		IAI47_05960	0.71	-0.6
1,220,413	-		IAI47_05960	0.71	+0.6
1,220,433	-		IAI47_05960	0.73	-2.7
1,220,440	+		IAI47_05960	0.73	+2.8
1,220,440	+		IAI47_05960	0.73	-1.4
1,220,440	+		IAI47_05960	0.73	-0.1
1,220,440	+		IAI47_05960	0.73	-0.4
1,220,440	+		IAI47_05960	0.73	-0.8
1,220,441	-		IAI47_05960	0.73	-0.5
1,220,441	-		IAI47_05960	0.73	-0.1
1,220,441	-		IAI47_05960	0.73	+0.6
1,220,441	-		IAI47_05960	0.73	+0.8
1,220,441	-		IAI47_05960	0.73	-0.2
1,220,441	-		IAI47_05960	0.73	-0.5
1,220,442	+		IAI47_05960	0.73	-0.7
1,220,442	+		IAI47_05960	0.73	-0.8
1,220,442	+		IAI47_05960	0.73	-1.2
1,220,442	+		IAI47_05960	0.73	-1.2
1,220,442	+		IAI47_05960	0.73	-0.3
1,220,442	+		IAI47_05960	0.73	-2.8
1,220,442	+		IAI47_05960	0.73	-0.4
1,220,442	+		IAI47_05960	0.73	-0.6
1,220,442	+		IAI47_05960	0.73	-0.6
1,220,442	+		IAI47_05960	0.73	+1.2
1,220,442	+		IAI47_05960	0.73	+1.3
1,220,442	+		IAI47_05960	0.73	-0.7
1,220,442	+		IAI47_05960	0.73	-1.1
1,220,443	-		IAI47_05960	0.73	+0.3
1,220,443	-		IAI47_05960	0.73	-0.4
1,220,443	-		IAI47_05960	0.73	-1.9
1,220,443	-		IAI47_05960	0.73	-1.2
1,220,443	-		IAI47_05960	0.73	-0.0
1,220,443	-		IAI47_05960	0.73	-0.7
1,220,443	-		IAI47_05960	0.73	-0.3
1,220,443	-		IAI47_05960	0.73	-0.6
1,220,581	+		IAI47_05960	0.85	+0.9
1,220,582	-		IAI47_05960	0.86	-0.9
1,220,610	+		IAI47_05960	0.88	+1.5
1,220,610	+		IAI47_05960	0.88	+0.2
1,220,613	+		IAI47_05960	0.88	-1.0
1,220,613	+		IAI47_05960	0.88	-1.3
1,220,613	+		IAI47_05960	0.88	+1.1
1,220,613	+		IAI47_05960	0.88	+1.2
1,220,614	-		IAI47_05960	0.88	-1.1
1,220,614	-		IAI47_05960	0.88	-0.1
1,220,614	-		IAI47_05960	0.88	+0.5
1,220,614	-		IAI47_05960	0.88	+0.7
1,220,614	-		IAI47_05960	0.88	+0.8
1,220,619	+		IAI47_05960	0.89	-0.3
1,220,620	-		IAI47_05960	0.89	-1.0
1,220,690	+				+2.1
1,220,690	+				-1.7
1,220,691	-				-1.9
1,220,753	+				+0.6
1,220,753	+				-0.4
1,220,755	+				-0.0
1,220,755	+				+0.2
1,220,755	+				+0.0
1,220,755	+				-0.6
1,220,755	+				-0.4
1,220,755	+				-1.2
1,220,755	+				-0.5
1,220,755	+				+0.2
1,220,755	+				-0.5
1,220,755	+				-1.6
1,220,755	+				+1.3
1,220,755	+				-0.1
1,220,755	+				+1.0
1,220,755	+				-0.8
1,220,755	+				-1.8
1,220,755	+				+1.8
1,220,755	+				-2.1
1,220,756	-				+0.4
1,220,756	-				-0.9
1,220,756	-				+1.0
1,220,756	-				-0.9
1,220,756	-				-0.2
1,220,756	-				-1.4
1,220,756	-				+0.9
1,220,756	-				+0.2
1,220,756	-				+0.6
1,220,756	-				+1.8
1,220,756	-				+0.4
1,220,756	-				-1.1
1,220,756	-				-1.3
1,220,763	+				-0.2
1,220,763	+				-1.4
1,220,763	+				+0.9
1,220,763	+				+0.6
1,220,764	-				-1.3
1,220,764	-				+0.6
1,220,764	-				-0.2
1,220,764	-				-0.6
1,220,764	-				-1.8
1,220,764	-				-0.8
1,220,767	+				-1.3
1,220,767	+				-0.8
1,220,768	-				+0.4
1,220,768	-				-0.7
1,220,768	-				+0.2
1,220,776	-				-0.5
1,220,784	+				-0.5
1,220,784	+				+2.6
1,220,784	+				-0.1
1,220,785	-				+0.1
1,220,785	-				+0.4
1,220,878	-		IAI47_05965	0.27	-0.4
1,220,948	+		IAI47_05965	0.43	-1.8
1,220,949	-		IAI47_05965	0.43	-1.2
1,220,978	+		IAI47_05965	0.50	-1.1
1,220,979	-		IAI47_05965	0.50	-0.5
1,220,982	+		IAI47_05965	0.51	+0.8
1,220,983	-		IAI47_05965	0.51	-2.2
1,221,001	+		IAI47_05965	0.55	-0.8
1,221,001	+		IAI47_05965	0.55	-0.7
1,221,002	-		IAI47_05965	0.55	+0.6
1,221,002	-		IAI47_05965	0.55	-0.8
1,221,002	-		IAI47_05965	0.55	+1.6
1,221,002	-		IAI47_05965	0.55	+0.9
1,221,044	+		IAI47_05965	0.65	+1.7
1,221,044	+		IAI47_05965	0.65	-1.1
1,221,044	+		IAI47_05965	0.65	+2.8
1,221,044	+		IAI47_05965	0.65	+3.5
1,221,044	+		IAI47_05965	0.65	+0.3
1,221,045	-		IAI47_05965	0.65	-0.2
1,221,045	-		IAI47_05965	0.65	-0.2
1,221,045	-		IAI47_05965	0.65	-0.3
1,221,045	-		IAI47_05965	0.65	+1.1
1,221,045	-		IAI47_05965	0.65	+2.0
1,221,045	-		IAI47_05965	0.65	-0.6
1,221,045	-		IAI47_05965	0.65	-0.1
1,221,045	-		IAI47_05965	0.65	-0.4
1,221,045	-		IAI47_05965	0.65	+0.1
1,221,060	+		IAI47_05965	0.68	-0.0
1,221,060	+		IAI47_05965	0.68	+0.4
1,221,061	-		IAI47_05965	0.69	-0.3
1,221,061	-		IAI47_05965	0.69	-1.0
1,221,061	-		IAI47_05965	0.69	-1.7
1,221,124	-		IAI47_05965	0.83	+0.8
1,221,225	+				+1.8
1,221,225	+				+1.3
1,221,226	-				+0.6
1,221,230	-				-0.8
1,221,230	-				-0.4
1,221,269	+		IAI47_05970	0.16	-0.9
1,221,269	+		IAI47_05970	0.16	-0.4
1,221,269	+		IAI47_05970	0.16	+1.8
1,221,270	-		IAI47_05970	0.16	-1.4
1,221,350	+		IAI47_05970	0.35	+1.0
1,221,350	+		IAI47_05970	0.35	-0.9
1,221,351	-		IAI47_05970	0.35	-2.3
1,221,351	-		IAI47_05970	0.35	-0.9
1,221,354	+		IAI47_05970	0.36	+0.9
1,221,354	+		IAI47_05970	0.36	+1.0
1,221,355	-		IAI47_05970	0.36	-0.8
1,221,355	-		IAI47_05970	0.36	+2.4
1,221,355	-		IAI47_05970	0.36	-2.9
1,221,417	+		IAI47_05970	0.50	+1.5
1,221,418	-		IAI47_05970	0.51	+0.2
1,221,431	+		IAI47_05970	0.54	-1.5
1,221,431	+		IAI47_05970	0.54	+1.1
1,221,432	-		IAI47_05970	0.54	+0.7
1,221,432	-		IAI47_05970	0.54	+1.2
1,221,486	-		IAI47_05970	0.67	-0.4
1,221,525	+		IAI47_05970	0.76	+1.6
1,221,525	+		IAI47_05970	0.76	-1.2
1,221,525	+		IAI47_05970	0.76	-1.1
1,221,525	+		IAI47_05970	0.76	-1.0
1,221,525	+		IAI47_05970	0.76	+0.2
1,221,525	+		IAI47_05970	0.76	+2.5
1,221,525	+		IAI47_05970	0.76	-1.6
1,221,525	+		IAI47_05970	0.76	+1.5
1,221,526	-		IAI47_05970	0.76	+2.4
1,221,526	-		IAI47_05970	0.76	+0.2
1,221,526	-		IAI47_05970	0.76	-1.1
1,221,526	-		IAI47_05970	0.76	+0.7
1,221,526	-		IAI47_05970	0.76	+1.3
1,221,684	+		IAI47_05975	0.14	-1.7
1,221,693	+		IAI47_05975	0.20	-0.7
1,221,694	-		IAI47_05975	0.20	-0.4
1,221,718	+		IAI47_05975	0.36	+0.3
1,221,718	+		IAI47_05975	0.36	+0.1
1,221,719	-		IAI47_05975	0.37	-0.7
1,221,719	-		IAI47_05975	0.37	-0.4