Strain Fitness in Pantoea sp. MT58

Strain Fitness in Pantoea sp. MT58 around IAI47_05760

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
				remove
1,196,509	+	IAI47_05750	0.74	-0.6
1,196,509	+	IAI47_05750	0.74	-0.6
1,196,510	-	IAI47_05750	0.74	-0.5
1,196,510	-	IAI47_05750	0.74	-0.6
1,196,510	-	IAI47_05750	0.74	+0.1
1,196,517	+	IAI47_05750	0.75	+0.8
1,196,517	+	IAI47_05750	0.75	-0.0
1,196,517	+	IAI47_05750	0.75	+0.0
1,196,517	+	IAI47_05750	0.75	-0.5
1,196,517	+	IAI47_05750	0.75	-1.0
1,196,517	+	IAI47_05750	0.75	-0.8
1,196,517	+	IAI47_05750	0.75	-1.2
1,196,517	+	IAI47_05750	0.75	+0.4
1,196,517	+	IAI47_05750	0.75	-0.7
1,196,518	-	IAI47_05750	0.75	+0.2
1,196,518	-	IAI47_05750	0.75	-0.7
1,196,518	-	IAI47_05750	0.75	-0.8
1,196,518	-	IAI47_05750	0.75	-1.6
1,196,518	-	IAI47_05750	0.75	+0.2
1,196,518	-	IAI47_05750	0.75	+0.9
1,196,518	-	IAI47_05750	0.75	-0.7
1,196,521	+	IAI47_05750	0.75	+0.1
1,196,522	-	IAI47_05750	0.75	-0.4
1,196,522	-	IAI47_05750	0.75	-2.8
1,196,522	-	IAI47_05750	0.75	-1.9
1,196,522	-	IAI47_05750	0.75	-1.5
1,196,569	+	IAI47_05750	0.80	+1.4
1,196,569	+	IAI47_05750	0.80	+0.3
1,196,569	+	IAI47_05750	0.80	+0.0
1,196,569	+	IAI47_05750	0.80	+0.6
1,196,569	+	IAI47_05750	0.80	+0.7
1,196,569	+	IAI47_05750	0.80	+1.1
1,196,569	+	IAI47_05750	0.80	+0.1
1,196,569	+	IAI47_05750	0.80	-2.1
1,196,569	+	IAI47_05750	0.80	-0.4
1,196,570	-	IAI47_05750	0.80	-0.1
1,196,570	-	IAI47_05750	0.80	+0.8
1,196,570	-	IAI47_05750	0.80	-0.3
1,196,570	-	IAI47_05750	0.80	-0.5
1,196,570	-	IAI47_05750	0.80	-1.3
1,196,570	-	IAI47_05750	0.80	+0.9
1,196,570	-	IAI47_05750	0.80	-1.5
1,196,584	+	IAI47_05750	0.82	+1.1
1,196,675	+			+0.6
1,196,676	-			-0.0
1,196,676	-			-0.6
1,196,676	-			-2.2
1,196,676	-			-2.4
1,196,676	-			+0.8
1,196,695	+			-0.7
1,196,699	+			-1.6
1,196,699	+			-0.6
1,196,699	+			-0.6
1,196,699	+			+0.4
1,196,699	+			+2.0
1,196,699	+			-0.6
1,196,699	+			-0.8
1,196,699	+			+1.2
1,196,700	-			+0.1
1,196,700	-			+0.1
1,196,700	-			-2.0
1,196,700	-			-0.2
1,196,700	-			-0.6
1,196,700	-			-2.4
1,196,700	-			+0.7
1,196,700	-			+1.0
1,196,700	-			+0.7
1,196,700	-			+0.5
1,196,700	-			+3.1
1,196,700	-			-1.7
1,196,700	-			+0.2
1,196,700	-			+0.3
1,196,700	-			-1.5
1,196,700	-			-0.3
1,196,740	+			+1.9
1,196,741	-			-0.8
1,196,828	+			-2.5
1,196,828	+			+0.1
1,196,829	-			+1.2
1,196,829	-			-0.2
1,196,831	-			+0.7
1,196,832	+			-0.3
1,196,832	+			+0.5
1,196,833	-			-2.4
1,196,861	+			-0.2
1,196,861	+			-1.2
1,196,861	+			+1.8
1,196,862	-			+0.9
1,196,862	-			+0.3
1,196,862	-			+0.6
1,196,862	-			-2.2
1,196,862	-			-2.4
1,196,862	-			-1.3
1,196,879	+			+0.4
1,196,880	-			-1.4
1,196,893	+			-1.6
1,196,893	+			+0.3
1,196,894	-			+0.8
1,196,894	-			-0.3
1,196,925	+			-0.3
1,196,925	+			-2.4
1,196,986	+	IAI47_05755	0.29	-0.4
1,196,986	+	IAI47_05755	0.29	-2.8
1,196,986	+	IAI47_05755	0.29	-0.4
1,197,043	+	IAI47_05755	0.48	-1.9
1,197,044	-	IAI47_05755	0.48	-0.8
1,197,044	-	IAI47_05755	0.48	+1.4
1,197,044	-	IAI47_05755	0.48	-0.6
1,197,070	+	IAI47_05755	0.57	-0.5
1,197,126	+	IAI47_05755	0.75	-0.0
1,197,127	-	IAI47_05755	0.76	+0.2
1,197,127	-	IAI47_05755	0.76	-0.5
1,197,127	-	IAI47_05755	0.76	+1.2
1,197,127	-	IAI47_05755	0.76	-2.2
1,197,214	+			+0.4
1,197,214	+			+0.1
1,197,214	+			+1.4
1,197,214	+			+0.2
1,197,215	-			-0.4
1,197,215	-			-0.9
1,197,215	-			+1.0
1,197,215	-			+0.9
1,197,216	+			-0.5
1,197,216	+			-2.2
1,197,217	-			-1.9
1,197,217	-			-2.0
1,197,277	+			-1.7
1,197,277	+			-0.2
1,197,278	-			+2.8
1,197,295	+			+1.0
1,197,324	+			+1.1
1,197,324	+			-3.0
1,197,375	+	IAI47_05760	0.20	-1.1
1,197,375	+	IAI47_05760	0.20	-1.4
1,197,376	-	IAI47_05760	0.20	-0.4
1,197,439	+	IAI47_05760	0.40	+0.8
1,197,440	-	IAI47_05760	0.41	-0.9
1,197,440	-	IAI47_05760	0.41	-2.3
1,197,440	-	IAI47_05760	0.41	-0.2
1,197,462	-	IAI47_05760	0.48	-0.0
1,197,514	+	IAI47_05760	0.64	-2.0
1,197,514	+	IAI47_05760	0.64	+1.0
1,197,514	+	IAI47_05760	0.64	-0.6
1,197,514	+	IAI47_05760	0.64	+0.4
1,197,515	-	IAI47_05760	0.65	-0.0
1,197,515	-	IAI47_05760	0.65	-0.6
1,197,515	-	IAI47_05760	0.65	+0.8
1,197,515	-	IAI47_05760	0.65	-1.3
1,197,515	-	IAI47_05760	0.65	-0.6
1,197,515	-	IAI47_05760	0.65	-0.8
1,197,515	-	IAI47_05760	0.65	-0.1
1,197,515	-	IAI47_05760	0.65	-1.3
1,197,515	-	IAI47_05760	0.65	-0.6
1,197,600	+			-0.8
1,197,600	+			-1.3
1,197,600	+			-0.9
1,197,600	+			+2.8
1,197,600	+			+1.3
1,197,600	+			-1.0
1,197,601	-			+0.5
1,197,601	-			+0.3
1,197,601	-			-0.7
1,197,601	-			-0.9
1,197,601	-			+0.1
1,197,624	+			+0.2
1,197,624	+			-0.3
1,197,624	+			+1.2
1,197,624	+			-0.8
1,197,624	+			-0.3
1,197,625	-			-0.8
1,197,625	-			-0.6
1,197,625	-			-0.6
1,197,625	-			+2.6
1,197,625	-			-0.6
1,197,625	-			-1.6
1,197,642	+			+0.2
1,197,642	+			-0.3
1,197,685	-	IAI47_05765	0.24	-0.5
1,197,830	+	IAI47_05765	0.85	+0.3
1,197,831	-	IAI47_05765	0.86	-0.1
1,197,831	-	IAI47_05765	0.86	-0.8
1,197,831	-	IAI47_05765	0.86	+0.6
1,197,852	+			+2.0
1,197,852	+			+1.2
1,197,852	+			+1.8
1,197,852	+			-0.1
1,197,852	+			+1.8
1,197,852	+			-0.0
1,197,853	-			-0.1
1,197,853	-			+0.3
1,197,853	-			-0.8
1,197,853	-			+0.8
1,197,867	+			+0.2
1,197,867	+			+0.1
1,197,867	+			-0.7
1,197,867	+			+0.2
1,197,867	+			+0.8
1,197,877	-			-0.2
1,197,877	-			-1.6
1,197,885	+			-0.6
1,197,886	-			+1.8
1,197,886	-			-1.3
1,197,886	-			+0.1
1,197,886	-			+0.4
1,197,886	-			+0.7
1,197,918	+			+2.8
1,197,938	+			+0.4
1,197,938	+			-2.1
1,197,939	-			-1.1
1,197,946	-			-0.4
1,197,946	-			+0.8
1,197,946	-			-1.0
1,197,975	+			-1.0
1,197,975	+			-1.3
1,197,975	+			+1.5
1,197,976	-			+0.1
1,197,976	-			-1.1
1,197,976	-			+1.2
1,198,019	+			+2.2
1,198,020	-			-1.8
1,198,055	+			+0.7
1,198,055	+			+1.8
1,198,055	+			+0.4
1,198,055	+			+1.2
1,198,056	-			+2.4
1,198,056	-			-0.1
1,198,056	-			+0.1
1,198,056	-			+0.5
1,198,056	-			-0.4
1,198,056	-			-0.6
1,198,056	-			+1.1
1,198,056	-			+1.1
1,198,059	+			-0.4
1,198,059	+			+0.4
1,198,059	+			+0.5
1,198,060	-			-0.4
1,198,060	-			-2.7
1,198,060	-			-1.3
1,198,060	-			+0.8
1,198,068	+			-0.2
1,198,069	-			+0.5
1,198,090	+			+0.2
1,198,090	+			+0.8
1,198,091	-			+0.1
1,198,091	-			+0.8
1,198,091	-			-2.9
1,198,091	-			+1.4
1,198,145	+			-1.6
1,198,145	+			-1.6
1,198,146	-			+1.4
1,198,146	-			+1.6
1,198,146	-			-0.0
1,198,146	-			+0.2
1,198,146	-			+2.8
1,198,161	+			-0.5
1,198,241	+			-1.6
1,198,242	-			-1.2
1,198,289	-			-0.0
1,198,289	-			-1.3
1,198,342	+			-1.0
1,198,342	+			+0.7
1,198,342	+			+2.1
1,198,408	+			+0.2
1,198,408	+			+1.4
1,198,409	-			+1.6
1,198,409	-			-1.6
1,198,409	-			+1.2
1,198,409	-			+0.6
1,198,409	-			-0.2
1,198,409	-			-0.6
1,198,409	-			+0.7
1,198,409	-			-0.9
1,198,409	-			+0.3
1,198,409	-			+0.0
1,198,427	+			-1.0
1,198,427	+			-1.4
1,198,427	+			+1.4
1,198,428	-			+1.0
1,198,428	-			+0.0
1,198,428	-			+1.4
1,198,428	-			-0.1
1,198,430	+			-1.2
1,198,430	+			-2.4
1,198,431	-			-1.1
1,198,431	-			+2.9
1,198,441	+			-1.8
1,198,441	+			-1.2
1,198,441	+			-1.1
1,198,441	+			-1.2
1,198,442	-			+1.0
1,198,442	-			+1.7
1,198,448	+			-1.7
1,198,449	-			+3.5
1,198,449	-			-0.7
1,198,449	-			-0.6
1,198,471	+			-0.5
1,198,471	+			-0.6
1,198,471	+			+1.3
1,198,471	+			+0.4
1,198,471	+			-0.7
1,198,472	-			+0.4
1,198,472	-			+1.4
1,198,472	-			+0.4
1,198,472	-			-0.0
1,198,508	-			+0.4
1,198,516	+			+1.2
1,198,516	+			-1.6
1,198,517	-			-0.1
1,198,517	-			+0.2
1,198,533	+			-0.3
1,198,555	+			+0.1
1,198,555	+			+1.2
1,198,556	-			+2.3
1,198,556	-			+0.4
1,198,556	-			+0.4
1,198,556	-			+0.7
1,198,556	-			+0.9
1,198,556	-			-0.2
1,198,556	-			-0.7

Or see this region's nucleotide sequence