Strain Fitness in Pantoea sp. MT58 around IAI47_05620

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,180,520	+				+0.2
1,180,520	+				-1.6
1,180,520	+				-2.2
1,180,521	-				-1.3
1,180,521	-				-0.1
1,180,521	-				+1.1
1,180,597	+				+0.9
1,180,610	+				-0.2
1,180,611	-				+0.2
1,180,617	+				+1.8
1,180,617	+				+1.2
1,180,618	-				-1.2
1,180,618	-				-0.8
1,180,642	+				+0.6
1,180,642	+				-0.1
1,180,643	-				+0.6
1,180,672	+				+0.1
1,180,673	-				-0.4
1,180,684	-				-0.2
1,180,687	+				-0.4
1,180,688	-				+1.5
1,180,698	+				-1.0
1,180,699	-				-1.8
1,180,714	-		IAI47_05610	0.15	+0.1
1,180,723	+		IAI47_05610	0.18	+1.7
1,180,723	+		IAI47_05610	0.18	+3.6
1,180,724	-		IAI47_05610	0.18	-1.5
1,180,724	-		IAI47_05610	0.18	+1.2
1,180,724	-		IAI47_05610	0.18	-1.2
1,180,777	+		IAI47_05610	0.37	+0.5
1,180,787	+		IAI47_05610	0.40	-1.2
1,180,829	-		IAI47_05610	0.55	+0.6
1,180,829	-		IAI47_05610	0.55	+1.8
1,180,829	-		IAI47_05610	0.55	-0.6
1,180,844	+		IAI47_05610	0.61	-0.8
1,180,844	+		IAI47_05610	0.61	+1.8
1,180,844	+		IAI47_05610	0.61	-1.7
1,180,845	-		IAI47_05610	0.61	-0.6
1,180,855	+		IAI47_05610	0.65	+1.4
1,180,856	-		IAI47_05610	0.65	-0.8
1,180,856	-		IAI47_05610	0.65	-0.0
1,180,856	-		IAI47_05610	0.65	+3.7
1,180,867	+		IAI47_05610	0.69	-0.3
1,180,900	+		IAI47_05610	0.80	-0.7
1,180,900	+		IAI47_05610	0.80	+1.8
1,180,900	+		IAI47_05610	0.80	+0.3
1,180,900	+		IAI47_05610	0.80	-0.5
1,180,900	+		IAI47_05610	0.80	-1.0
1,180,901	-		IAI47_05610	0.81	+3.4
1,180,933	+				-0.5
1,180,933	+				-0.8
1,180,934	-				+1.1
1,180,938	-				+0.6
1,180,956	+				+0.1
1,180,971	-				+0.9
1,180,975	-				-0.8
1,180,986	-				-0.3
1,180,992	+				+1.3
1,181,006	+				+1.2
1,181,043	+				+1.1
1,181,043	+				+0.6
1,181,043	+				-1.0
1,181,044	-				-0.1
1,181,044	-				-1.3
1,181,056	-		IAI47_05615	0.15	+4.2
1,181,056	-		IAI47_05615	0.15	+0.1
1,181,076	+		IAI47_05615	0.26	+0.9
1,181,076	+		IAI47_05615	0.26	-1.0
1,181,076	+		IAI47_05615	0.26	+0.9
1,181,076	+		IAI47_05615	0.26	+1.1
1,181,076	+		IAI47_05615	0.26	-0.2
1,181,077	-		IAI47_05615	0.27	+0.6
1,181,077	-		IAI47_05615	0.27	-1.1
1,181,077	-		IAI47_05615	0.27	+2.0
1,181,077	-		IAI47_05615	0.27	-1.9
1,181,077	-		IAI47_05615	0.27	-0.4
1,181,077	-		IAI47_05615	0.27	-0.9
1,181,077	-		IAI47_05615	0.27	+0.8
1,181,079	+		IAI47_05615	0.28	-1.0
1,181,080	-		IAI47_05615	0.29	+0.8
1,181,080	-		IAI47_05615	0.29	-0.5
1,181,143	+		IAI47_05615	0.65	+1.9
1,181,143	+		IAI47_05615	0.65	+1.1
1,181,143	+		IAI47_05615	0.65	-0.5
1,181,143	+		IAI47_05615	0.65	+2.4
1,181,144	-		IAI47_05615	0.66	+2.7
1,181,144	-		IAI47_05615	0.66	+1.3
1,181,144	-		IAI47_05615	0.66	-0.9
1,181,144	-		IAI47_05615	0.66	-0.5
1,181,144	-		IAI47_05615	0.66	-1.6
1,181,144	-		IAI47_05615	0.66	+0.4
1,181,144	-		IAI47_05615	0.66	-1.2
1,181,153	+		IAI47_05615	0.71	-2.6
1,181,153	+		IAI47_05615	0.71	-0.5
1,181,153	+		IAI47_05615	0.71	-0.1
1,181,153	+		IAI47_05615	0.71	-1.8
1,181,153	+		IAI47_05615	0.71	-1.0
1,181,153	+		IAI47_05615	0.71	+0.3
1,181,153	+		IAI47_05615	0.71	+1.6
1,181,154	-		IAI47_05615	0.71	-0.8
1,181,154	-		IAI47_05615	0.71	+1.6
1,181,154	-		IAI47_05615	0.71	-0.3
1,181,154	-		IAI47_05615	0.71	+0.1
1,181,156	+		IAI47_05615	0.72	-2.0
1,181,156	+		IAI47_05615	0.72	+0.8
1,181,157	-		IAI47_05615	0.73	+0.9
1,181,192	+				-1.6
1,181,231	+				+0.8
1,181,232	-				+0.6
1,181,239	+				-0.2
1,181,240	-				-2.4
1,181,240	-				+0.4
1,181,275	-				-0.1
1,181,280	+				-0.9
1,181,281	-				-0.7
1,181,284	+				-1.3
1,181,284	+				+1.2
1,181,284	+				-0.6
1,181,292	+				+1.3
1,181,293	-				+0.3
1,181,302	+				+1.2
1,181,320	+				-1.3
1,181,320	+				-1.3
1,181,320	+				+1.8
1,181,321	-				+1.1
1,181,321	-				+0.1
1,181,360	+				+0.4
1,181,361	-				-0.4
1,181,364	+				-0.8
1,181,364	+				+2.9
1,181,365	-				+0.1
1,181,365	-				+0.2
1,181,370	+				+0.9
1,181,370	+				+0.8
1,181,371	-				-0.8
1,181,382	+				-0.9
1,181,382	+				+2.7
1,181,382	+				+0.5
1,181,383	-				+0.2
1,181,383	-				-0.7
1,181,383	-				+0.9
1,181,383	-				+0.8
1,181,431	+				+0.7
1,181,432	-				+0.2
1,181,432	-				-0.5
1,181,432	-				-0.6
1,181,436	+				+1.2
1,181,436	+				+1.5
1,181,436	+				-0.6
1,181,436	+				+1.7
1,181,436	+				+0.3
1,181,436	+				+1.4
1,181,437	-				-0.4
1,181,437	-				+0.1
1,181,437	-				-0.0
1,181,437	-				+0.2
1,181,437	-				-0.2
1,181,437	-				+1.1
1,181,439	+				+0.9
1,181,439	+				+1.0
1,181,440	-				+0.3
1,181,440	-				-0.0
1,181,440	-				+1.5
1,181,440	-				+1.6
1,181,482	-				-1.9
1,181,487	+				-0.6
1,181,498	+				-0.7
1,181,499	-				-1.0
1,181,551	+				+0.5
1,181,551	+				+1.1
1,181,552	-				+0.5
1,181,552	-				+0.1
1,181,552	-				+1.1
1,181,562	+		IAI47_05620	0.11	+0.3
1,181,589	+		IAI47_05620	0.14	+0.5
1,181,643	+		IAI47_05620	0.20	+0.2
1,181,643	+		IAI47_05620	0.20	+0.2
1,181,643	+		IAI47_05620	0.20	+0.1
1,181,643	+		IAI47_05620	0.20	+0.8
1,181,643	+		IAI47_05620	0.20	+0.3
1,181,643	+		IAI47_05620	0.20	-0.1
1,181,643	+		IAI47_05620	0.20	+1.0
1,181,643	-		IAI47_05620	0.20	-0.9
1,181,644	-		IAI47_05620	0.20	-1.7
1,181,644	-		IAI47_05620	0.20	-0.2
1,181,644	-		IAI47_05620	0.20	+1.9
1,181,644	-		IAI47_05620	0.20	-1.2
1,181,644	-		IAI47_05620	0.20	+0.3
1,181,669	+		IAI47_05620	0.23	+1.5
1,181,672	+		IAI47_05620	0.23	+0.9
1,181,672	+		IAI47_05620	0.23	+0.2
1,181,672	+		IAI47_05620	0.23	-1.3
1,181,673	-		IAI47_05620	0.24	-1.0
1,181,673	-		IAI47_05620	0.24	+0.8
1,181,673	-		IAI47_05620	0.24	-1.6
1,181,715	+		IAI47_05620	0.28	+0.3
1,181,769	+		IAI47_05620	0.34	+1.1
1,181,769	+		IAI47_05620	0.34	-0.8
1,181,769	+		IAI47_05620	0.34	+0.9
1,181,770	-		IAI47_05620	0.35	-0.7
1,181,797	-		IAI47_05620	0.38	-2.3
1,181,898	+		IAI47_05620	0.49	-0.5
1,181,899	-		IAI47_05620	0.49	-0.4
1,181,944	+		IAI47_05620	0.54	+0.1
1,181,944	+		IAI47_05620	0.54	+2.5
1,181,944	+		IAI47_05620	0.54	+1.3
1,181,944	+		IAI47_05620	0.54	+0.3
1,181,944	+		IAI47_05620	0.54	-0.4
1,181,944	+		IAI47_05620	0.54	+1.8
1,181,944	+		IAI47_05620	0.54	-1.6
1,181,945	-		IAI47_05620	0.55	-0.6
1,181,945	-		IAI47_05620	0.55	+0.1
1,181,945	-		IAI47_05620	0.55	+0.9
1,181,974	+		IAI47_05620	0.58	-1.5
1,181,974	+		IAI47_05620	0.58	-0.4
1,181,975	-		IAI47_05620	0.58	+1.5
1,181,975	-		IAI47_05620	0.58	+1.6
1,181,980	+		IAI47_05620	0.59	+0.4
1,182,085	+		IAI47_05620	0.71	+1.2
1,182,119	+		IAI47_05620	0.74	-1.3
1,182,119	+		IAI47_05620	0.74	+0.2
1,182,120	-		IAI47_05620	0.75	-0.3
1,182,120	-		IAI47_05620	0.75	+0.4
1,182,120	-		IAI47_05620	0.75	-0.8
1,182,123	+		IAI47_05620	0.75	+0.5
1,182,123	+		IAI47_05620	0.75	+1.2
1,182,124	-		IAI47_05620	0.75	+2.0
1,182,124	-		IAI47_05620	0.75	+0.2
1,182,124	-		IAI47_05620	0.75	-0.9
1,182,138	+		IAI47_05620	0.77	+0.3
1,182,211	-		IAI47_05620	0.85	+2.5
1,182,226	-		IAI47_05620	0.87	+0.3
1,182,268	+				-2.1
1,182,297	-				-2.8
1,182,360	-				-0.7
1,182,360	-				+0.5
1,182,372	+				-0.2
1,182,372	+				+3.0
1,182,373	-				-0.1
1,182,392	+				+1.5
1,182,393	-				+0.8
1,182,436	+				-0.5
1,182,436	+				-1.1
1,182,436	+				-1.8
1,182,436	+				+0.9
1,182,437	-				+2.1
1,182,437	-				+0.6
1,182,437	-				-1.2
1,182,437	-				+0.3
1,182,444	+				-1.0
1,182,483	+				-1.3
1,182,483	+				-0.7
1,182,483	+				-2.1
1,182,484	-				-0.5
1,182,552	+		IAI47_05625	0.13	-0.8
1,182,553	-		IAI47_05625	0.13	+0.2
1,182,566	+		IAI47_05625	0.14	+0.2
1,182,639	+		IAI47_05625	0.20	-0.3
1,182,639	+		IAI47_05625	0.20	-0.3
1,182,639	+		IAI47_05625	0.20	-0.3
1,182,640	-		IAI47_05625	0.20	-0.4
1,182,640	-		IAI47_05625	0.20	-0.5
1,182,640	-		IAI47_05625	0.20	-0.7
1,182,706	-		IAI47_05625	0.26	-0.5
1,182,796	+		IAI47_05625	0.33	+1.2
1,182,797	-		IAI47_05625	0.33	-0.2
1,182,836	-		IAI47_05625	0.36	+1.2
1,182,836	-		IAI47_05625	0.36	+0.4
1,182,836	-		IAI47_05625	0.36	-0.6
1,182,901	+		IAI47_05625	0.42	-0.4
1,182,902	-		IAI47_05625	0.42	-0.2
1,182,908	+		IAI47_05625	0.42	-0.2
1,182,909	-		IAI47_05625	0.42	+0.5
1,182,909	-		IAI47_05625	0.42	-2.0
1,182,909	-		IAI47_05625	0.42	-1.0
1,182,909	-		IAI47_05625	0.42	-0.6
1,182,909	-		IAI47_05625	0.42	-0.9
1,182,921	+		IAI47_05625	0.43	+1.0
1,182,921	+		IAI47_05625	0.43	-0.1
1,182,921	+		IAI47_05625	0.43	-0.5
1,182,921	+		IAI47_05625	0.43	+0.7
1,182,922	-		IAI47_05625	0.43	-0.3
1,182,956	+		IAI47_05625	0.46	+2.1
1,182,957	-		IAI47_05625	0.46	-1.5
1,182,970	+		IAI47_05625	0.47	+0.2
1,182,970	+		IAI47_05625	0.47	+0.1
1,182,999	+		IAI47_05625	0.50	+1.8
1,182,999	+		IAI47_05625	0.50	+0.1
1,183,000	-		IAI47_05625	0.50	+0.4
1,183,000	-		IAI47_05625	0.50	+1.0
1,183,000	-		IAI47_05625	0.50	+0.1
1,183,000	-		IAI47_05625	0.50	-0.2
1,183,014	+		IAI47_05625	0.51	-0.2
1,183,014	+		IAI47_05625	0.51	+0.3
1,183,014	+		IAI47_05625	0.51	-0.7
1,183,014	+		IAI47_05625	0.51	+1.1
1,183,014	+		IAI47_05625	0.51	-1.1
1,183,014	+		IAI47_05625	0.51	-0.0
1,183,014	+		IAI47_05625	0.51	+0.3
1,183,015	-		IAI47_05625	0.51	+1.4
1,183,155	+		IAI47_05625	0.62	+0.6
1,183,178	+		IAI47_05625	0.64	-0.5
1,183,178	+		IAI47_05625	0.64	-1.5
1,183,178	+		IAI47_05625	0.64	+0.7
1,183,179	-		IAI47_05625	0.64	+1.0
1,183,179	-		IAI47_05625	0.64	+1.0
1,183,179	-		IAI47_05625	0.64	-0.9
1,183,239	+		IAI47_05625	0.69	+1.1
1,183,239	+		IAI47_05625	0.69	+0.7
1,183,256	+		IAI47_05625	0.70	+0.3
1,183,257	-		IAI47_05625	0.71	-0.0
1,183,318	-		IAI47_05625	0.76	-1.2