Strain Fitness in Pantoea sp. MT58 around IAI47_05445

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,150,518	-		IAI47_05440	0.19	+0.6
1,150,523	+		IAI47_05440	0.19	-0.4
1,150,523	+		IAI47_05440	0.19	-0.5
1,150,523	+		IAI47_05440	0.19	+0.8
1,150,523	+		IAI47_05440	0.19	-0.5
1,150,524	-		IAI47_05440	0.20	+0.8
1,150,524	-		IAI47_05440	0.20	-0.1
1,150,524	-		IAI47_05440	0.20	+0.5
1,150,563	+		IAI47_05440	0.24	-0.4
1,150,602	-		IAI47_05440	0.28	+2.3
1,150,602	-		IAI47_05440	0.28	+1.9
1,150,616	+		IAI47_05440	0.29	-0.8
1,150,708	-		IAI47_05440	0.38	+1.5
1,150,739	+		IAI47_05440	0.42	-1.1
1,150,739	+		IAI47_05440	0.42	+2.3
1,150,739	+		IAI47_05440	0.42	+0.7
1,150,739	+		IAI47_05440	0.42	+0.8
1,150,739	+		IAI47_05440	0.42	+1.7
1,150,740	-		IAI47_05440	0.42	-0.7
1,150,740	-		IAI47_05440	0.42	-0.4
1,150,741	+		IAI47_05440	0.42	-1.6
1,150,742	-		IAI47_05440	0.42	+1.5
1,150,742	-		IAI47_05440	0.42	+1.9
1,150,742	-		IAI47_05440	0.42	-0.2
1,150,742	-		IAI47_05440	0.42	-0.2
1,150,742	-		IAI47_05440	0.42	-0.2
1,150,742	-		IAI47_05440	0.42	+0.9
1,150,742	-		IAI47_05440	0.42	-0.5
1,150,763	+		IAI47_05440	0.44	+2.1
1,150,787	+		IAI47_05440	0.47	-0.7
1,150,892	-		IAI47_05440	0.57	+0.7
1,150,892	-		IAI47_05440	0.57	+0.9
1,150,892	-		IAI47_05440	0.57	-2.0
1,150,892	-		IAI47_05440	0.57	+1.3
1,150,952	+		IAI47_05440	0.64	+1.8
1,150,953	-		IAI47_05440	0.64	-0.9
1,150,953	-		IAI47_05440	0.64	+1.1
1,150,953	-		IAI47_05440	0.64	-0.0
1,150,976	+		IAI47_05440	0.66	-1.8
1,150,976	+		IAI47_05440	0.66	-0.0
1,150,977	-		IAI47_05440	0.66	-0.2
1,151,000	+		IAI47_05440	0.69	-0.0
1,151,001	-		IAI47_05440	0.69	+0.7
1,151,040	+		IAI47_05440	0.73	-0.3
1,151,041	-		IAI47_05440	0.73	+1.3
1,151,068	+		IAI47_05440	0.76	+2.1
1,151,068	+		IAI47_05440	0.76	+0.4
1,151,068	+		IAI47_05440	0.76	-0.7
1,151,068	+		IAI47_05440	0.76	-2.5
1,151,068	+		IAI47_05440	0.76	-2.4
1,151,068	+		IAI47_05440	0.76	-0.8
1,151,069	-		IAI47_05440	0.76	-0.1
1,151,069	-		IAI47_05440	0.76	-0.3
1,151,069	-		IAI47_05440	0.76	+1.8
1,151,069	-		IAI47_05440	0.76	-2.1
1,151,069	-		IAI47_05440	0.76	+1.0
1,151,132	+		IAI47_05440	0.82	-0.4
1,151,133	-		IAI47_05440	0.82	-0.3
1,151,159	+		IAI47_05440	0.85	-1.2
1,151,159	+		IAI47_05440	0.85	-1.0
1,151,160	-		IAI47_05440	0.85	+0.5
1,151,160	-		IAI47_05440	0.85	-0.1
1,151,160	-		IAI47_05440	0.85	+2.4
1,151,160	-		IAI47_05440	0.85	+2.4
1,151,181	+		IAI47_05440	0.87	+0.5
1,151,181	+		IAI47_05440	0.87	+3.8
1,151,261	+				+0.1
1,151,261	+				+1.6
1,151,261	+				+1.8
1,151,261	+				-0.8
1,151,262	-				-2.4
1,151,262	-				+2.8
1,151,262	-				+0.2
1,151,262	-				+0.7
1,151,262	-				+0.4
1,151,290	+				+1.7
1,151,290	+				+1.6
1,151,290	+				-1.4
1,151,290	+				-0.8
1,151,290	+				-1.0
1,151,291	-				+2.5
1,151,291	-				+1.3
1,151,291	-				-1.4
1,151,291	-				-0.0
1,151,297	+				-2.2
1,151,297	+				+0.1
1,151,297	+				+1.0
1,151,297	+				+0.4
1,151,297	+				-0.7
1,151,297	+				+0.8
1,151,297	+				-0.2
1,151,298	-				+0.5
1,151,298	-				+1.8
1,151,298	-				-1.0
1,151,303	+				+0.9
1,151,303	+				-0.0
1,151,303	+				-0.9
1,151,304	-				-0.5
1,151,314	+				-2.7
1,151,314	+				-0.9
1,151,314	+				-1.8
1,151,315	-				+0.5
1,151,315	-				+0.2
1,151,315	-				+0.4
1,151,327	+				+0.1
1,151,340	-				-0.4
1,151,347	+				-0.7
1,151,347	+				+0.8
1,151,347	+				-2.5
1,151,347	+				+1.2
1,151,347	+				+1.6
1,151,347	+				-1.0
1,151,347	+				-0.9
1,151,347	+				-1.6
1,151,347	+				-1.8
1,151,347	+				-1.7
1,151,348	-				-0.8
1,151,348	-				-0.5
1,151,348	-				+2.7
1,151,348	-				-1.4
1,151,348	-				-1.4
1,151,348	-				+0.4
1,151,348	-				+1.0
1,151,348	-				-0.8
1,151,348	-				-0.6
1,151,348	-				-0.2
1,151,348	-				-0.5
1,151,348	-				-0.7
1,151,383	+				-1.5
1,151,383	+				-0.4
1,151,383	+				-2.2
1,151,383	+				-0.7
1,151,383	+				-0.2
1,151,383	+				+1.4
1,151,384	-				+0.2
1,151,384	-				+0.5
1,151,384	-				+0.5
1,151,385	+				-0.5
1,151,385	+				-0.4
1,151,385	+				-1.1
1,151,385	+				+0.1
1,151,385	+				+1.5
1,151,386	-				+1.2
1,151,386	-				+0.3
1,151,386	-				+0.4
1,151,389	+				+0.6
1,151,389	+				+0.9
1,151,389	+				+2.4
1,151,389	+				+1.1
1,151,389	+				+0.8
1,151,390	-				+2.0
1,151,390	-				-0.4
1,151,390	-				-0.4
1,151,390	-				-0.4
1,151,390	-				+1.2
1,151,390	-				+0.9
1,151,390	-				+1.9
1,151,390	-				-1.4
1,151,390	-				+0.2
1,151,391	+				-0.4
1,151,392	-				-1.7
1,151,392	-				-0.2
1,151,406	+				+0.9
1,151,407	-				-0.0
1,151,417	-				+0.6
1,151,417	-				+2.4
1,151,427	+				-0.1
1,151,427	+				-0.6
1,151,427	+				+0.8
1,151,428	-				-0.7
1,151,428	-				+0.1
1,151,446	+				+0.2
1,151,526	-		IAI47_05445	0.11	-1.0
1,151,526	-		IAI47_05445	0.11	+0.3
1,151,526	-		IAI47_05445	0.11	+0.7
1,151,526	-		IAI47_05445	0.11	-1.4
1,151,526	-		IAI47_05445	0.11	-0.2
1,151,537	+		IAI47_05445	0.12	+1.5
1,151,537	+		IAI47_05445	0.12	+0.3
1,151,538	-		IAI47_05445	0.12	-1.4
1,151,666	-		IAI47_05445	0.29	-1.2
1,151,677	-		IAI47_05445	0.30	+0.9
1,151,738	+		IAI47_05445	0.38	-0.8
1,151,738	+		IAI47_05445	0.38	-2.0
1,151,738	+		IAI47_05445	0.38	-2.0
1,151,738	+		IAI47_05445	0.38	-1.0
1,151,739	-		IAI47_05445	0.38	+0.5
1,151,743	+		IAI47_05445	0.39	-0.2
1,151,744	-		IAI47_05445	0.39	-3.2
1,151,744	-		IAI47_05445	0.39	-0.7
1,151,744	-		IAI47_05445	0.39	-1.1
1,151,776	+		IAI47_05445	0.43	-1.9
1,151,776	+		IAI47_05445	0.43	-0.5
1,151,777	-		IAI47_05445	0.43	-0.8
1,151,777	-		IAI47_05445	0.43	-1.7
1,151,777	-		IAI47_05445	0.43	-0.5
1,151,779	+		IAI47_05445	0.43	-1.4
1,151,779	+		IAI47_05445	0.43	-1.4
1,151,780	-		IAI47_05445	0.44	-1.7
1,151,780	-		IAI47_05445	0.44	+1.6
1,151,780	-		IAI47_05445	0.44	-0.7
1,151,808	-		IAI47_05445	0.47	-1.7
1,151,808	-		IAI47_05445	0.47	-0.2
1,151,825	+		IAI47_05445	0.49	-0.9
1,151,825	+		IAI47_05445	0.49	+1.1
1,151,825	+		IAI47_05445	0.49	-2.1
1,151,826	-		IAI47_05445	0.50	-1.4
1,151,826	-		IAI47_05445	0.50	+1.8
1,151,826	-		IAI47_05445	0.50	-0.0
1,151,992	+		IAI47_05445	0.71	-0.5
1,151,992	+		IAI47_05445	0.71	-2.2
1,151,993	-		IAI47_05445	0.71	-2.4
1,151,993	-		IAI47_05445	0.71	-0.8
1,151,993	-		IAI47_05445	0.71	+1.3
1,151,993	-		IAI47_05445	0.71	-0.2
1,152,021	-		IAI47_05445	0.75	-1.2
1,152,058	+		IAI47_05445	0.80	+1.2
1,152,059	-		IAI47_05445	0.80	-1.3
1,152,089	+		IAI47_05445	0.84	-2.3
1,152,089	+		IAI47_05445	0.84	-1.4
1,152,090	-		IAI47_05445	0.84	-2.6
1,152,090	-		IAI47_05445	0.84	-1.7
1,152,090	-		IAI47_05445	0.84	-0.7
1,152,090	-		IAI47_05445	0.84	-0.9
1,152,090	-		IAI47_05445	0.84	+1.9
1,152,090	-		IAI47_05445	0.84	-0.2
1,152,090	-		IAI47_05445	0.84	-0.4
1,152,090	-		IAI47_05445	0.84	-2.2
1,152,164	+				-1.0
1,152,165	-				-1.7
1,152,169	+				-0.9
1,152,169	+				-1.6
1,152,170	-				-1.3
1,152,170	-				-0.2
1,152,183	-				-0.8
1,152,213	-				-0.4
1,152,237	-				-0.9
1,152,237	-				-0.7
1,152,250	+				-0.7
1,152,250	+				-1.9
1,152,250	+				-1.8
1,152,250	+				-1.2
1,152,250	+				-1.5
1,152,250	+				+1.4
1,152,251	-				-1.6
1,152,251	-				-0.0
1,152,251	-				-0.6
1,152,251	-				+1.1
1,152,251	-				-0.3
1,152,251	-				-1.4
1,152,251	-				-0.0
1,152,251	-				+1.0
1,152,252	+				-0.8
1,152,252	+				-1.8
1,152,252	+				+0.3
1,152,252	+				-0.8
1,152,253	-				+1.2
1,152,253	-				-1.4
1,152,253	-				+0.2
1,152,253	-				-0.4
1,152,253	-				+0.9
1,152,319	+				-0.4
1,152,324	+				-0.2
1,152,324	+				+2.2
1,152,324	+				-0.2
1,152,324	+				-0.7
1,152,324	+				+0.1
1,152,324	+				+2.4
1,152,324	+				+0.9
1,152,324	+				-0.2
1,152,324	+				-1.6
1,152,324	+				-0.1
1,152,324	+				-0.3
1,152,325	-				+1.7
1,152,325	-				+0.4
1,152,325	-				-0.8
1,152,325	-				+1.7
1,152,325	-				-0.7
1,152,325	-				-0.3
1,152,325	-				-0.3
1,152,325	-				+1.1
1,152,325	-				-1.0
1,152,325	-				-0.1
1,152,325	-				+1.6
1,152,325	-				-1.2
1,152,325	-				+0.9
1,152,325	-				+0.4
1,152,325	-				-0.9
1,152,338	+				+1.2
1,152,338	+				-1.9
1,152,373	+				+1.2
1,152,373	+				-0.5
1,152,379	+				+0.8
1,152,379	+				+0.7
1,152,379	+				-1.3
1,152,386	+				+1.9
1,152,409	+				+0.2