Strain Fitness in Pantoea sp. MT58 around IAI47_03190

Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_03185 and IAI47_03190 are separated by 45 nucleotidesIAI47_03190 and IAI47_03195 are separated by 141 nucleotides IAI47_03185: IAI47_03185 - DNA topoisomerase IV subunit A, at 658,990 to 661,263 _03185 IAI47_03190: IAI47_03190 - 1-acylglycerol-3-phosphate O-acyltransferase, at 661,309 to 662,046 _03190 IAI47_03195: IAI47_03195 - cell division protein FtsP, at 662,188 to 663,618 _03195 Position (kb) 661 662 663Strain fitness (log2 ratio) -2 -1 0 1at 661.261 kb on + strandat 661.266 kb on + strandat 662.171 kb on - strandat 662.187 kb on + strandat 662.253 kb on - strandat 662.464 kb on - strand, within IAI47_03195at 662.556 kb on + strand, within IAI47_03195at 662.852 kb on + strand, within IAI47_03195at 662.939 kb on + strand, within IAI47_03195at 662.939 kb on + strand, within IAI47_03195

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
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661,261 + +0.3
661,266 + +0.7
662,171 - +0.3
662,187 + +0.1
662,253 - -1.7
662,464 - IAI47_03195 0.19 -0.1
662,556 + IAI47_03195 0.26 -0.7
662,852 + IAI47_03195 0.46 +0.0
662,939 + IAI47_03195 0.52 -0.3
662,939 + IAI47_03195 0.52 -2.7

Or see this region's nucleotide sequence