Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03125 and IAI47_03130 are separated by 7 nucleotides IAI47_03130 and IAI47_03135 are separated by 142 nucleotides IAI47_03135 and IAI47_03140 are separated by 213 nucleotides IAI47_03140 and IAI47_03145 overlap by 4 nucleotides
IAI47_03125: IAI47_03125 - glutathionylspermidine synthase family protein, at 647,438 to 648,598
_03125
IAI47_03130: IAI47_03130 - DUF1190 family protein, at 648,606 to 649,277
_03130
IAI47_03135: IAI47_03135 - outer membrane channel protein TolC, at 649,420 to 650,886
_03135
IAI47_03140: IAI47_03140 - ADP-ribose diphosphatase, at 651,100 to 651,735
_03140
IAI47_03145: IAI47_03145 - DUF1249 family protein, at 651,732 to 652,157
_03145
Position (kb) 649
650
651 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 648.486 kb on + strand at 648.486 kb on + strand at 648.486 kb on + strand at 648.487 kb on - strand at 648.487 kb on - strand at 648.489 kb on + strand at 648.489 kb on + strand at 648.489 kb on + strand at 648.489 kb on + strand at 648.489 kb on + strand at 648.489 kb on + strand at 648.489 kb on + strand at 648.489 kb on + strand at 648.490 kb on - strand at 648.490 kb on - strand at 648.490 kb on - strand at 648.490 kb on - strand at 648.490 kb on - strand at 648.490 kb on - strand at 648.490 kb on - strand at 648.490 kb on - strand at 648.490 kb on - strand at 648.490 kb on - strand at 648.490 kb on - strand at 648.490 kb on - strand at 648.508 kb on - strand at 648.508 kb on - strand at 648.526 kb on + strand at 648.527 kb on - strand at 648.527 kb on - strand at 648.527 kb on - strand at 648.608 kb on - strand at 648.632 kb on + strand at 648.632 kb on + strand at 648.632 kb on + strand at 648.632 kb on + strand at 648.633 kb on - strand at 648.699 kb on - strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.778 kb on + strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.779 kb on - strand, within IAI47_03130 at 648.783 kb on - strand, within IAI47_03130 at 648.783 kb on - strand, within IAI47_03130 at 648.783 kb on - strand, within IAI47_03130 at 648.896 kb on - strand, within IAI47_03130 at 648.896 kb on - strand, within IAI47_03130 at 649.033 kb on + strand, within IAI47_03130 at 649.046 kb on + strand, within IAI47_03130 at 649.046 kb on + strand, within IAI47_03130 at 649.046 kb on + strand, within IAI47_03130 at 649.046 kb on + strand, within IAI47_03130 at 649.047 kb on - strand at 649.047 kb on - strand, within IAI47_03130 at 649.082 kb on + strand, within IAI47_03130 at 649.082 kb on + strand, within IAI47_03130 at 649.083 kb on - strand, within IAI47_03130 at 649.083 kb on - strand, within IAI47_03130 at 649.083 kb on - strand, within IAI47_03130 at 649.085 kb on + strand, within IAI47_03130 at 649.086 kb on - strand, within IAI47_03130 at 649.086 kb on - strand, within IAI47_03130 at 649.086 kb on - strand, within IAI47_03130 at 649.138 kb on + strand, within IAI47_03130 at 649.138 kb on + strand, within IAI47_03130 at 649.138 kb on + strand, within IAI47_03130 at 649.139 kb on - strand, within IAI47_03130 at 649.139 kb on - strand, within IAI47_03130 at 649.139 kb on - strand, within IAI47_03130 at 649.139 kb on - strand, within IAI47_03130 at 649.181 kb on + strand, within IAI47_03130 at 649.181 kb on + strand, within IAI47_03130 at 649.181 kb on + strand, within IAI47_03130 at 649.181 kb on + strand, within IAI47_03130 at 649.181 kb on + strand, within IAI47_03130 at 649.182 kb on - strand, within IAI47_03130 at 649.182 kb on - strand, within IAI47_03130 at 649.185 kb on + strand, within IAI47_03130 at 649.185 kb on + strand, within IAI47_03130 at 649.186 kb on - strand, within IAI47_03130 at 649.186 kb on - strand, within IAI47_03130 at 649.186 kb on - strand, within IAI47_03130 at 649.203 kb on - strand, within IAI47_03130 at 649.253 kb on - strand at 649.259 kb on + strand at 649.260 kb on - strand at 649.278 kb on + strand at 649.278 kb on + strand at 649.279 kb on - strand at 649.279 kb on - strand at 649.279 kb on - strand at 649.279 kb on - strand at 649.285 kb on - strand at 649.285 kb on - strand at 649.285 kb on - strand at 649.285 kb on - strand at 649.308 kb on + strand at 649.308 kb on + strand at 649.308 kb on + strand at 649.308 kb on + strand at 649.308 kb on + strand at 649.308 kb on + strand at 649.309 kb on - strand at 649.309 kb on - strand at 649.309 kb on - strand at 649.309 kb on - strand at 649.313 kb on + strand at 649.313 kb on + strand at 649.351 kb on + strand at 649.351 kb on + strand at 649.351 kb on + strand at 649.351 kb on + strand at 649.352 kb on - strand at 649.366 kb on + strand at 649.366 kb on + strand at 649.366 kb on + strand at 649.366 kb on + strand at 649.367 kb on - strand at 649.367 kb on - strand at 649.370 kb on + strand at 649.370 kb on + strand at 649.370 kb on + strand at 649.370 kb on + strand at 649.370 kb on + strand at 649.370 kb on + strand at 649.371 kb on - strand at 649.371 kb on - strand at 649.371 kb on - strand at 649.371 kb on - strand at 649.374 kb on + strand at 649.374 kb on + strand at 649.374 kb on + strand at 649.374 kb on + strand at 649.374 kb on + strand at 649.374 kb on + strand at 649.374 kb on + strand at 649.374 kb on + strand at 649.375 kb on - strand at 649.375 kb on - strand at 649.375 kb on - strand at 649.375 kb on - strand at 649.375 kb on - strand at 649.375 kb on - strand at 649.375 kb on - strand at 649.375 kb on - strand at 649.375 kb on - strand at 649.375 kb on - strand at 649.376 kb on + strand at 649.377 kb on - strand at 649.377 kb on - strand at 649.377 kb on - strand at 649.377 kb on - strand at 649.377 kb on - strand at 649.377 kb on - strand at 649.377 kb on - strand at 649.421 kb on + strand at 649.422 kb on - strand at 649.422 kb on - strand at 649.422 kb on - strand at 649.438 kb on - strand at 649.622 kb on + strand, within IAI47_03135 at 649.623 kb on - strand, within IAI47_03135 at 649.623 kb on - strand, within IAI47_03135 at 649.650 kb on - strand, within IAI47_03135 at 649.654 kb on - strand, within IAI47_03135 at 649.654 kb on - strand, within IAI47_03135 at 649.654 kb on - strand, within IAI47_03135 at 649.732 kb on - strand, within IAI47_03135 at 649.816 kb on - strand, within IAI47_03135 at 649.949 kb on + strand, within IAI47_03135 at 649.949 kb on + strand, within IAI47_03135 at 649.949 kb on + strand, within IAI47_03135 at 650.039 kb on + strand, within IAI47_03135 at 650.040 kb on - strand, within IAI47_03135 at 650.089 kb on - strand, within IAI47_03135 at 650.181 kb on + strand, within IAI47_03135 at 650.250 kb on + strand, within IAI47_03135 at 650.251 kb on - strand, within IAI47_03135 at 650.251 kb on - strand, within IAI47_03135 at 650.251 kb on - strand, within IAI47_03135 at 650.253 kb on - strand, within IAI47_03135 at 650.253 kb on - strand, within IAI47_03135 at 650.253 kb on - strand, within IAI47_03135 at 650.253 kb on - strand, within IAI47_03135 at 650.285 kb on - strand, within IAI47_03135 at 650.285 kb on - strand, within IAI47_03135 at 650.285 kb on - strand, within IAI47_03135 at 650.339 kb on + strand, within IAI47_03135 at 650.340 kb on - strand, within IAI47_03135 at 650.425 kb on - strand, within IAI47_03135 at 650.425 kb on - strand, within IAI47_03135 at 650.448 kb on - strand, within IAI47_03135 at 650.448 kb on - strand, within IAI47_03135 at 650.528 kb on + strand, within IAI47_03135 at 650.528 kb on + strand, within IAI47_03135 at 650.650 kb on - strand, within IAI47_03135 at 650.679 kb on - strand, within IAI47_03135 at 650.705 kb on - strand, within IAI47_03135 at 650.705 kb on - strand, within IAI47_03135 at 650.705 kb on - strand, within IAI47_03135 at 650.707 kb on + strand, within IAI47_03135 at 650.707 kb on + strand, within IAI47_03135 at 650.854 kb on - strand at 650.854 kb on - strand at 650.854 kb on - strand at 650.934 kb on - strand at 650.979 kb on + strand at 650.979 kb on + strand at 650.979 kb on + strand at 650.980 kb on - strand at 650.980 kb on - strand at 650.980 kb on - strand at 650.980 kb on - strand at 650.980 kb on - strand at 650.980 kb on - strand at 651.001 kb on + strand at 651.001 kb on + strand at 651.001 kb on + strand at 651.001 kb on + strand at 651.002 kb on - strand at 651.002 kb on - strand at 651.002 kb on - strand at 651.002 kb on - strand at 651.002 kb on - strand at 651.007 kb on + strand at 651.008 kb on - strand at 651.008 kb on - strand at 651.012 kb on + strand at 651.012 kb on + strand at 651.012 kb on + strand at 651.013 kb on - strand at 651.013 kb on - strand at 651.013 kb on - strand at 651.013 kb on - strand at 651.017 kb on - strand at 651.017 kb on - strand at 651.021 kb on - strand at 651.021 kb on - strand at 651.035 kb on + strand at 651.035 kb on + strand at 651.035 kb on + strand at 651.035 kb on + strand at 651.035 kb on + strand at 651.036 kb on - strand at 651.036 kb on - strand at 651.036 kb on - strand at 651.036 kb on - strand at 651.036 kb on - strand at 651.036 kb on - strand at 651.039 kb on + strand at 651.039 kb on + strand at 651.039 kb on + strand at 651.039 kb on + strand at 651.039 kb on + strand at 651.039 kb on + strand at 651.040 kb on - strand at 651.040 kb on - strand at 651.040 kb on - strand at 651.040 kb on - strand at 651.040 kb on - strand at 651.040 kb on - strand at 651.040 kb on - strand at 651.040 kb on - strand at 651.055 kb on - strand at 651.055 kb on - strand at 651.147 kb on - strand at 651.173 kb on - strand, within IAI47_03140 at 651.173 kb on - strand, within IAI47_03140 at 651.173 kb on - strand, within IAI47_03140 at 651.173 kb on - strand, within IAI47_03140 at 651.173 kb on - strand, within IAI47_03140 at 651.173 kb on - strand, within IAI47_03140 at 651.173 kb on - strand, within IAI47_03140 at 651.222 kb on + strand, within IAI47_03140 at 651.223 kb on - strand, within IAI47_03140 at 651.287 kb on + strand, within IAI47_03140 at 651.287 kb on + strand, within IAI47_03140 at 651.287 kb on + strand, within IAI47_03140 at 651.287 kb on + strand, within IAI47_03140 at 651.287 kb on + strand, within IAI47_03140 at 651.288 kb on - strand, within IAI47_03140 at 651.288 kb on - strand, within IAI47_03140 at 651.288 kb on - strand, within IAI47_03140 at 651.288 kb on - strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.292 kb on + strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.293 kb on - strand, within IAI47_03140 at 651.303 kb on - strand, within IAI47_03140 at 651.346 kb on + strand, within IAI47_03140 at 651.346 kb on + strand, within IAI47_03140 at 651.347 kb on - strand, within IAI47_03140 at 651.394 kb on - strand, within IAI47_03140 at 651.471 kb on + strand, within IAI47_03140 at 651.472 kb on - strand, within IAI47_03140 at 651.472 kb on - strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.483 kb on + strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.484 kb on - strand, within IAI47_03140 at 651.487 kb on + strand, within IAI47_03140 at 651.487 kb on + strand, within IAI47_03140 at 651.487 kb on + strand, within IAI47_03140 at 651.487 kb on + strand, within IAI47_03140 at 651.487 kb on + strand, within IAI47_03140 at 651.487 kb on + strand, within IAI47_03140 at 651.487 kb on + strand, within IAI47_03140 at 651.488 kb on - strand, within IAI47_03140 at 651.594 kb on + strand, within IAI47_03140 at 651.594 kb on + strand, within IAI47_03140 at 651.595 kb on - strand, within IAI47_03140 at 651.595 kb on - strand, within IAI47_03140 at 651.629 kb on - strand, within IAI47_03140 at 651.629 kb on - strand, within IAI47_03140 at 651.657 kb on + strand, within IAI47_03140 at 651.711 kb on - strand at 651.744 kb on + strand at 651.744 kb on + strand at 651.745 kb on - strand at 651.745 kb on - strand at 651.746 kb on + strand at 651.746 kb on + strand at 651.747 kb on - strand at 651.747 kb on - strand at 651.747 kb on - strand at 651.799 kb on + strand, within IAI47_03145 at 651.800 kb on - strand, within IAI47_03145 at 651.800 kb on - strand, within IAI47_03145 at 651.846 kb on + strand, within IAI47_03145 at 651.847 kb on - strand, within IAI47_03145 at 651.847 kb on - strand, within IAI47_03145
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 648,486 + +0.4 648,486 + -0.8 648,486 + -0.6 648,487 - -0.1 648,487 - +1.2 648,489 + +0.9 648,489 + -0.4 648,489 + +0.2 648,489 + +0.8 648,489 + -0.9 648,489 + -0.3 648,489 + -1.4 648,489 + -1.9 648,490 - +0.6 648,490 - +0.8 648,490 - -1.5 648,490 - -1.4 648,490 - +0.2 648,490 - +0.6 648,490 - -0.6 648,490 - +0.7 648,490 - +1.0 648,490 - +1.4 648,490 - +0.7 648,490 - -1.4 648,508 - +1.2 648,508 - -0.7 648,526 + +0.7 648,527 - +0.7 648,527 - -1.0 648,527 - -0.6 648,608 - +0.9 648,632 + -1.5 648,632 + +0.8 648,632 + +1.4 648,632 + -0.8 648,633 - +1.2 648,699 - IAI47_03130 0.14 +0.4 648,778 + IAI47_03130 0.26 -0.5 648,778 + IAI47_03130 0.26 -0.9 648,778 + IAI47_03130 0.26 +0.3 648,778 + IAI47_03130 0.26 +1.4 648,778 + IAI47_03130 0.26 +0.7 648,778 + IAI47_03130 0.26 -1.2 648,778 + IAI47_03130 0.26 +0.5 648,778 + IAI47_03130 0.26 -0.6 648,778 + IAI47_03130 0.26 +5.8 648,778 + IAI47_03130 0.26 +1.4 648,778 + IAI47_03130 0.26 -2.7 648,778 + IAI47_03130 0.26 -2.3 648,779 - IAI47_03130 0.26 +0.2 648,779 - IAI47_03130 0.26 +1.5 648,779 - IAI47_03130 0.26 -0.4 648,779 - IAI47_03130 0.26 -0.1 648,779 - IAI47_03130 0.26 +1.3 648,779 - IAI47_03130 0.26 +1.3 648,779 - IAI47_03130 0.26 -0.3 648,779 - IAI47_03130 0.26 -1.0 648,779 - IAI47_03130 0.26 +1.4 648,779 - IAI47_03130 0.26 -0.3 648,779 - IAI47_03130 0.26 +0.1 648,779 - IAI47_03130 0.26 +1.9 648,779 - IAI47_03130 0.26 -1.3 648,779 - IAI47_03130 0.26 -2.5 648,783 - IAI47_03130 0.26 +2.2 648,783 - IAI47_03130 0.26 -0.3 648,783 - IAI47_03130 0.26 +2.6 648,896 - IAI47_03130 0.43 -2.1 648,896 - IAI47_03130 0.43 -0.4 649,033 + IAI47_03130 0.64 -0.1 649,046 + IAI47_03130 0.65 +0.2 649,046 + IAI47_03130 0.65 -1.9 649,046 + IAI47_03130 0.65 -1.8 649,046 + IAI47_03130 0.65 -1.1 649,047 - +0.2 649,047 - IAI47_03130 0.66 +0.6 649,082 + IAI47_03130 0.71 -1.6 649,082 + IAI47_03130 0.71 +1.2 649,083 - IAI47_03130 0.71 -3.0 649,083 - IAI47_03130 0.71 -1.4 649,083 - IAI47_03130 0.71 +1.9 649,085 + IAI47_03130 0.71 -1.5 649,086 - IAI47_03130 0.71 -0.2 649,086 - IAI47_03130 0.71 -2.2 649,086 - IAI47_03130 0.71 +2.7 649,138 + IAI47_03130 0.79 +0.6 649,138 + IAI47_03130 0.79 +2.6 649,138 + IAI47_03130 0.79 -1.0 649,139 - IAI47_03130 0.79 +0.4 649,139 - IAI47_03130 0.79 -2.0 649,139 - IAI47_03130 0.79 +0.3 649,139 - IAI47_03130 0.79 +0.7 649,181 + IAI47_03130 0.86 -0.5 649,181 + IAI47_03130 0.86 -0.1 649,181 + IAI47_03130 0.86 +1.7 649,181 + IAI47_03130 0.86 +1.2 649,181 + IAI47_03130 0.86 -0.6 649,182 - IAI47_03130 0.86 -0.1 649,182 - IAI47_03130 0.86 +3.1 649,185 + IAI47_03130 0.86 -0.6 649,185 + IAI47_03130 0.86 -0.8 649,186 - IAI47_03130 0.86 +0.2 649,186 - IAI47_03130 0.86 +1.1 649,186 - IAI47_03130 0.86 -0.8 649,203 - IAI47_03130 0.89 +1.3 649,253 - -2.6 649,259 + +1.5 649,260 - -1.6 649,278 + +1.3 649,278 + -2.5 649,279 - +0.9 649,279 - +1.1 649,279 - -0.9 649,279 - +0.5 649,285 - -0.5 649,285 - -1.8 649,285 - +3.0 649,285 - +0.5 649,308 + +2.2 649,308 + -1.2 649,308 + -0.7 649,308 + -0.9 649,308 + -2.5 649,308 + -0.1 649,309 - 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Or see this region's nucleotide sequence