Experiment: Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01485 and IAI47_01490 are separated by 62 nucleotides IAI47_01490 and IAI47_01495 are separated by 47 nucleotides IAI47_01495 and IAI47_01500 are separated by 49 nucleotides
IAI47_01485: IAI47_01485 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing), at 323,971 to 325,911
_01485
IAI47_01490: IAI47_01490 - Gfo/Idh/MocA family oxidoreductase, at 325,974 to 326,984
_01490
IAI47_01495: IAI47_01495 - myo-inosose-2 dehydratase, at 327,032 to 327,928
_01495
IAI47_01500: IAI47_01500 - DcrB family lipoprotein, at 327,978 to 328,532
_01500
Position (kb) 325
326
327 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 324.974 kb on - strand, within IAI47_01485 at 324.974 kb on - strand, within IAI47_01485 at 324.974 kb on - strand, within IAI47_01485 at 324.974 kb on - strand, within IAI47_01485 at 325.054 kb on + strand, within IAI47_01485 at 325.055 kb on - strand, within IAI47_01485 at 325.055 kb on - strand, within IAI47_01485 at 325.123 kb on + strand, within IAI47_01485 at 325.123 kb on + strand, within IAI47_01485 at 325.124 kb on - strand, within IAI47_01485 at 325.136 kb on - strand, within IAI47_01485 at 325.136 kb on - strand, within IAI47_01485 at 325.241 kb on + strand, within IAI47_01485 at 325.242 kb on - strand, within IAI47_01485 at 325.342 kb on + strand, within IAI47_01485 at 325.342 kb on + strand, within IAI47_01485 at 325.343 kb on - strand, within IAI47_01485 at 325.343 kb on - strand, within IAI47_01485 at 325.343 kb on - strand, within IAI47_01485 at 325.343 kb on - strand, within IAI47_01485 at 325.343 kb on - strand, within IAI47_01485 at 325.351 kb on + strand, within IAI47_01485 at 325.352 kb on - strand, within IAI47_01485 at 325.352 kb on - strand, within IAI47_01485 at 325.352 kb on - strand, within IAI47_01485 at 325.363 kb on + strand, within IAI47_01485 at 325.363 kb on + strand, within IAI47_01485 at 325.363 kb on + strand, within IAI47_01485 at 325.363 kb on + strand, within IAI47_01485 at 325.364 kb on - strand, within IAI47_01485 at 325.369 kb on + strand, within IAI47_01485 at 325.369 kb on + strand, within IAI47_01485 at 325.369 kb on + strand, within IAI47_01485 at 325.369 kb on + strand, within IAI47_01485 at 325.370 kb on - strand, within IAI47_01485 at 325.438 kb on + strand, within IAI47_01485 at 325.438 kb on + strand, within IAI47_01485 at 325.439 kb on - strand, within IAI47_01485 at 325.439 kb on - strand, within IAI47_01485 at 325.439 kb on - strand, within IAI47_01485 at 325.439 kb on - strand, within IAI47_01485 at 325.439 kb on - strand, within IAI47_01485 at 325.439 kb on - strand, within IAI47_01485 at 325.464 kb on + strand, within IAI47_01485 at 325.464 kb on + strand, within IAI47_01485 at 325.464 kb on + strand, within IAI47_01485 at 325.465 kb on - strand, within IAI47_01485 at 325.465 kb on - strand, within IAI47_01485 at 325.465 kb on - strand, within IAI47_01485 at 325.516 kb on - strand, within IAI47_01485 at 325.533 kb on + strand, within IAI47_01485 at 325.533 kb on + strand, within IAI47_01485 at 325.678 kb on + strand, within IAI47_01485 at 325.693 kb on + strand, within IAI47_01485 at 325.693 kb on + strand, within IAI47_01485 at 325.765 kb on - strand at 325.785 kb on + strand at 325.786 kb on + strand at 325.804 kb on + strand at 325.805 kb on - strand at 325.909 kb on + strand at 325.951 kb on - strand at 325.951 kb on - strand at 325.959 kb on + strand at 325.960 kb on - strand at 325.960 kb on - strand at 325.960 kb on - strand at 325.960 kb on - strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.969 kb on + strand at 325.970 kb on - strand at 325.970 kb on - strand at 325.970 kb on - strand at 325.970 kb on - strand at 325.970 kb on - strand at 325.970 kb on - strand at 325.970 kb on - strand at 325.973 kb on + strand at 325.973 kb on + strand at 325.973 kb on + strand at 326.000 kb on + strand at 326.001 kb on - strand at 326.001 kb on - strand at 326.024 kb on + strand at 326.024 kb on + strand at 326.024 kb on + strand at 326.024 kb on + strand at 326.024 kb on + strand at 326.025 kb on - strand at 326.025 kb on - strand at 326.025 kb on - strand at 326.025 kb on - strand at 326.025 kb on - strand at 326.025 kb on - strand at 326.025 kb on - strand at 326.225 kb on - strand, within IAI47_01490 at 326.348 kb on + strand, within IAI47_01490 at 326.349 kb on - strand, within IAI47_01490 at 326.358 kb on + strand, within IAI47_01490 at 326.358 kb on + strand, within IAI47_01490 at 326.358 kb on + strand, within IAI47_01490 at 326.359 kb on - strand, within IAI47_01490 at 326.359 kb on - strand, within IAI47_01490 at 326.393 kb on + strand, within IAI47_01490 at 326.394 kb on - strand, within IAI47_01490 at 326.394 kb on - strand, within IAI47_01490 at 326.463 kb on + strand, within IAI47_01490 at 326.463 kb on + strand, within IAI47_01490 at 326.463 kb on + strand, within IAI47_01490 at 326.463 kb on + strand, within IAI47_01490 at 326.463 kb on + strand, within IAI47_01490 at 326.464 kb on - strand, within IAI47_01490 at 326.464 kb on - strand, within IAI47_01490 at 326.464 kb on - strand, within IAI47_01490 at 326.464 kb on - strand, within IAI47_01490 at 326.464 kb on - strand, within IAI47_01490 at 326.464 kb on - strand, within IAI47_01490 at 326.464 kb on - strand, within IAI47_01490 at 326.464 kb on - strand, within IAI47_01490 at 326.464 kb on - strand, within IAI47_01490 at 326.538 kb on + strand, within IAI47_01490 at 326.538 kb on + strand, within IAI47_01490 at 326.538 kb on + strand, within IAI47_01490 at 326.539 kb on - strand, within IAI47_01490 at 326.539 kb on - strand, within IAI47_01490 at 326.539 kb on - strand, within IAI47_01490 at 326.539 kb on - strand, within IAI47_01490 at 326.540 kb on + strand, within IAI47_01490 at 326.540 kb on + strand, within IAI47_01490 at 326.540 kb on + strand, within IAI47_01490 at 326.540 kb on + strand, within IAI47_01490 at 326.541 kb on - strand, within IAI47_01490 at 326.541 kb on - strand, within IAI47_01490 at 326.541 kb on - strand, within IAI47_01490 at 326.541 kb on - strand, within IAI47_01490 at 326.640 kb on - strand, within IAI47_01490 at 326.660 kb on + strand, within IAI47_01490 at 326.670 kb on + strand, within IAI47_01490 at 326.671 kb on - strand, within IAI47_01490 at 326.671 kb on - strand, within IAI47_01490 at 326.676 kb on + strand, within IAI47_01490 at 326.676 kb on + strand, within IAI47_01490 at 326.677 kb on - strand, within IAI47_01490 at 326.740 kb on + strand, within IAI47_01490 at 326.740 kb on + strand, within IAI47_01490 at 326.741 kb on - strand, within IAI47_01490 at 326.811 kb on + strand, within IAI47_01490 at 326.811 kb on + strand, within IAI47_01490 at 326.811 kb on + strand, within IAI47_01490 at 326.811 kb on + strand, within IAI47_01490 at 326.812 kb on - strand, within IAI47_01490 at 326.812 kb on - strand, within IAI47_01490 at 326.812 kb on - strand, within IAI47_01490 at 326.834 kb on + strand, within IAI47_01490 at 326.861 kb on + strand, within IAI47_01490 at 326.861 kb on + strand, within IAI47_01490 at 326.862 kb on - strand, within IAI47_01490 at 326.976 kb on + strand at 326.976 kb on + strand at 326.976 kb on + strand at 326.977 kb on - strand at 326.977 kb on - strand at 326.977 kb on - strand at 326.978 kb on + strand at 326.978 kb on + strand at 326.979 kb on - strand at 326.979 kb on - strand at 326.979 kb on - strand at 326.995 kb on + strand at 326.995 kb on + strand at 326.996 kb on - strand at 327.049 kb on - strand at 327.112 kb on + strand at 327.113 kb on - strand at 327.113 kb on - strand at 327.155 kb on - strand, within IAI47_01495 at 327.179 kb on + strand, within IAI47_01495 at 327.361 kb on + strand, within IAI47_01495 at 327.361 kb on + strand, within IAI47_01495 at 327.361 kb on + strand, within IAI47_01495 at 327.362 kb on - strand, within IAI47_01495 at 327.367 kb on + strand, within IAI47_01495 at 327.367 kb on + strand, within IAI47_01495 at 327.368 kb on - strand, within IAI47_01495 at 327.368 kb on - strand, within IAI47_01495 at 327.432 kb on + strand, within IAI47_01495 at 327.433 kb on - strand, within IAI47_01495 at 327.446 kb on + strand, within IAI47_01495 at 327.547 kb on + strand, within IAI47_01495 at 327.581 kb on + strand, within IAI47_01495 at 327.581 kb on + strand, within IAI47_01495 at 327.581 kb on + strand, within IAI47_01495 at 327.582 kb on - strand, within IAI47_01495 at 327.582 kb on - strand, within IAI47_01495 at 327.582 kb on - strand, within IAI47_01495 at 327.582 kb on - strand, within IAI47_01495 at 327.599 kb on + strand, within IAI47_01495 at 327.599 kb on + strand, within IAI47_01495 at 327.599 kb on + strand, within IAI47_01495 at 327.600 kb on - strand, within IAI47_01495 at 327.600 kb on - strand, within IAI47_01495 at 327.600 kb on - strand, within IAI47_01495 at 327.600 kb on - strand, within IAI47_01495 at 327.600 kb on - strand, within IAI47_01495 at 327.602 kb on + strand, within IAI47_01495 at 327.602 kb on + strand, within IAI47_01495 at 327.648 kb on - strand, within IAI47_01495 at 327.648 kb on - strand, within IAI47_01495 at 327.757 kb on + strand, within IAI47_01495 at 327.800 kb on - strand, within IAI47_01495 at 327.815 kb on + strand, within IAI47_01495 at 327.816 kb on - strand, within IAI47_01495 at 327.821 kb on + strand, within IAI47_01495 at 327.821 kb on + strand, within IAI47_01495 at 327.822 kb on - strand, within IAI47_01495 at 327.881 kb on + strand at 327.881 kb on + strand at 327.902 kb on + strand at 327.903 kb on - strand at 327.903 kb on - strand at 327.905 kb on - strand at 327.916 kb on + strand at 327.924 kb on + strand at 327.924 kb on + strand at 327.924 kb on + strand at 327.924 kb on + strand at 327.924 kb on + strand at 327.926 kb on + strand at 327.926 kb on + strand at 327.927 kb on - strand at 327.980 kb on - strand at 327.980 kb on - strand at 327.980 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW106 (pH3.9) with 1 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 324,974 - IAI47_01485 0.52 +0.5 324,974 - IAI47_01485 0.52 +0.3 324,974 - IAI47_01485 0.52 -0.5 324,974 - IAI47_01485 0.52 -0.7 325,054 + IAI47_01485 0.56 +0.2 325,055 - IAI47_01485 0.56 -1.3 325,055 - IAI47_01485 0.56 +0.1 325,123 + IAI47_01485 0.59 +0.5 325,123 + IAI47_01485 0.59 +1.0 325,124 - IAI47_01485 0.59 +0.9 325,136 - IAI47_01485 0.60 +0.5 325,136 - IAI47_01485 0.60 -0.6 325,241 + IAI47_01485 0.65 -2.1 325,242 - IAI47_01485 0.65 +0.4 325,342 + IAI47_01485 0.71 +0.6 325,342 + IAI47_01485 0.71 -0.3 325,343 - IAI47_01485 0.71 -1.2 325,343 - IAI47_01485 0.71 -0.4 325,343 - IAI47_01485 0.71 +0.6 325,343 - IAI47_01485 0.71 +0.5 325,343 - IAI47_01485 0.71 +1.4 325,351 + IAI47_01485 0.71 +0.5 325,352 - IAI47_01485 0.71 -1.0 325,352 - IAI47_01485 0.71 -0.1 325,352 - IAI47_01485 0.71 +0.7 325,363 + IAI47_01485 0.72 +0.9 325,363 + IAI47_01485 0.72 +1.0 325,363 + IAI47_01485 0.72 -0.0 325,363 + IAI47_01485 0.72 +0.6 325,364 - IAI47_01485 0.72 +0.2 325,369 + IAI47_01485 0.72 +1.0 325,369 + IAI47_01485 0.72 +0.7 325,369 + IAI47_01485 0.72 -0.2 325,369 + IAI47_01485 0.72 -0.9 325,370 - IAI47_01485 0.72 +1.5 325,438 + IAI47_01485 0.76 +0.2 325,438 + IAI47_01485 0.76 -0.7 325,439 - IAI47_01485 0.76 -0.5 325,439 - IAI47_01485 0.76 -0.2 325,439 - IAI47_01485 0.76 -1.9 325,439 - IAI47_01485 0.76 +0.2 325,439 - IAI47_01485 0.76 +0.5 325,439 - IAI47_01485 0.76 -1.4 325,464 + IAI47_01485 0.77 -2.0 325,464 + IAI47_01485 0.77 +0.2 325,464 + IAI47_01485 0.77 +1.3 325,465 - IAI47_01485 0.77 +0.5 325,465 - IAI47_01485 0.77 +0.4 325,465 - IAI47_01485 0.77 -0.5 325,516 - IAI47_01485 0.80 -2.3 325,533 + IAI47_01485 0.80 -1.6 325,533 + IAI47_01485 0.80 +2.8 325,678 + IAI47_01485 0.88 +2.5 325,693 + IAI47_01485 0.89 +0.3 325,693 + IAI47_01485 0.89 -2.6 325,765 - -1.0 325,785 + +1.7 325,786 + -1.4 325,804 + +0.0 325,805 - +0.2 325,909 + -0.9 325,951 - -2.0 325,951 - -0.8 325,959 + -0.5 325,960 - -0.0 325,960 - +0.2 325,960 - +0.9 325,960 - +1.2 325,969 + -2.4 325,969 + +1.1 325,969 + -0.8 325,969 + +1.4 325,969 + -0.4 325,969 + +2.1 325,969 + +0.3 325,969 + -0.6 325,969 + -0.8 325,969 + +1.6 325,969 + +0.5 325,969 + -0.9 325,969 + -0.0 325,969 + -2.4 325,969 + +1.2 325,970 - +0.8 325,970 - +0.0 325,970 - -2.0 325,970 - -2.5 325,970 - -0.2 325,970 - +0.2 325,970 - +0.8 325,973 + +0.6 325,973 + +0.9 325,973 + +2.8 326,000 + +0.3 326,001 - -0.9 326,001 - -1.1 326,024 + -1.4 326,024 + +1.4 326,024 + -0.6 326,024 + -0.1 326,024 + +0.8 326,025 - -0.4 326,025 - -1.0 326,025 - -0.0 326,025 - +1.3 326,025 - +0.6 326,025 - +0.0 326,025 - -2.3 326,225 - IAI47_01490 0.25 +0.1 326,348 + IAI47_01490 0.37 +0.4 326,349 - IAI47_01490 0.37 -2.1 326,358 + IAI47_01490 0.38 -1.1 326,358 + IAI47_01490 0.38 -0.6 326,358 + IAI47_01490 0.38 -0.2 326,359 - IAI47_01490 0.38 +3.8 326,359 - IAI47_01490 0.38 -1.8 326,393 + IAI47_01490 0.41 -0.2 326,394 - IAI47_01490 0.42 +0.1 326,394 - IAI47_01490 0.42 +0.9 326,463 + IAI47_01490 0.48 -0.6 326,463 + IAI47_01490 0.48 +0.7 326,463 + IAI47_01490 0.48 +0.5 326,463 + IAI47_01490 0.48 +2.7 326,463 + IAI47_01490 0.48 -1.8 326,464 - IAI47_01490 0.48 +1.7 326,464 - IAI47_01490 0.48 -2.1 326,464 - IAI47_01490 0.48 +0.5 326,464 - IAI47_01490 0.48 -0.3 326,464 - IAI47_01490 0.48 +1.1 326,464 - IAI47_01490 0.48 +0.5 326,464 - IAI47_01490 0.48 -1.2 326,464 - IAI47_01490 0.48 +0.6 326,464 - IAI47_01490 0.48 -0.5 326,538 + IAI47_01490 0.56 -0.4 326,538 + IAI47_01490 0.56 -0.6 326,538 + IAI47_01490 0.56 -0.1 326,539 - IAI47_01490 0.56 +1.0 326,539 - IAI47_01490 0.56 -0.6 326,539 - IAI47_01490 0.56 -0.2 326,539 - IAI47_01490 0.56 -0.5 326,540 + IAI47_01490 0.56 +0.7 326,540 + IAI47_01490 0.56 -1.0 326,540 + IAI47_01490 0.56 +0.4 326,540 + IAI47_01490 0.56 +1.0 326,541 - IAI47_01490 0.56 +0.2 326,541 - IAI47_01490 0.56 -0.9 326,541 - IAI47_01490 0.56 +0.1 326,541 - IAI47_01490 0.56 +1.7 326,640 - IAI47_01490 0.66 +0.2 326,660 + IAI47_01490 0.68 -0.4 326,670 + IAI47_01490 0.69 -1.7 326,671 - IAI47_01490 0.69 +0.5 326,671 - IAI47_01490 0.69 -1.2 326,676 + IAI47_01490 0.69 +0.1 326,676 + IAI47_01490 0.69 -0.8 326,677 - IAI47_01490 0.70 +0.2 326,740 + IAI47_01490 0.76 +0.0 326,740 + IAI47_01490 0.76 -0.8 326,741 - IAI47_01490 0.76 -0.0 326,811 + IAI47_01490 0.83 -0.1 326,811 + IAI47_01490 0.83 -1.6 326,811 + IAI47_01490 0.83 -0.5 326,811 + IAI47_01490 0.83 -1.9 326,812 - IAI47_01490 0.83 +1.9 326,812 - IAI47_01490 0.83 -0.7 326,812 - IAI47_01490 0.83 -1.6 326,834 + IAI47_01490 0.85 +0.2 326,861 + IAI47_01490 0.88 -2.6 326,861 + IAI47_01490 0.88 -0.3 326,862 - IAI47_01490 0.88 +2.3 326,976 + +1.6 326,976 + -0.0 326,976 + +0.4 326,977 - -0.8 326,977 - -0.1 326,977 - -0.8 326,978 + +2.2 326,978 + +0.8 326,979 - +2.0 326,979 - +1.3 326,979 - +0.8 326,995 + -0.3 326,995 + +0.9 326,996 - -0.8 327,049 - +0.4 327,112 + +0.9 327,113 - +2.0 327,113 - -1.6 327,155 - IAI47_01495 0.14 -1.6 327,179 + IAI47_01495 0.16 +0.0 327,361 + IAI47_01495 0.37 +1.1 327,361 + IAI47_01495 0.37 +1.0 327,361 + IAI47_01495 0.37 -0.9 327,362 - IAI47_01495 0.37 -0.6 327,367 + IAI47_01495 0.37 -0.9 327,367 + IAI47_01495 0.37 +0.7 327,368 - IAI47_01495 0.37 -2.2 327,368 - IAI47_01495 0.37 +0.5 327,432 + IAI47_01495 0.45 -0.4 327,433 - IAI47_01495 0.45 -1.0 327,446 + IAI47_01495 0.46 +2.2 327,547 + IAI47_01495 0.57 +1.1 327,581 + IAI47_01495 0.61 +1.8 327,581 + IAI47_01495 0.61 +1.3 327,581 + IAI47_01495 0.61 -1.8 327,582 - IAI47_01495 0.61 -1.8 327,582 - IAI47_01495 0.61 +0.8 327,582 - IAI47_01495 0.61 -0.9 327,582 - IAI47_01495 0.61 +0.7 327,599 + IAI47_01495 0.63 +0.4 327,599 + IAI47_01495 0.63 -1.6 327,599 + IAI47_01495 0.63 +0.0 327,600 - IAI47_01495 0.63 -1.8 327,600 - IAI47_01495 0.63 +1.0 327,600 - IAI47_01495 0.63 +0.2 327,600 - IAI47_01495 0.63 +1.2 327,600 - IAI47_01495 0.63 +1.2 327,602 + IAI47_01495 0.64 +0.0 327,602 + IAI47_01495 0.64 -1.4 327,648 - IAI47_01495 0.69 +0.3 327,648 - IAI47_01495 0.69 +0.5 327,757 + IAI47_01495 0.81 -0.0 327,800 - IAI47_01495 0.86 +2.4 327,815 + IAI47_01495 0.87 +0.8 327,816 - IAI47_01495 0.87 -0.1 327,821 + IAI47_01495 0.88 +0.6 327,821 + IAI47_01495 0.88 +0.0 327,822 - IAI47_01495 0.88 +0.1 327,881 + +0.4 327,881 + +0.7 327,902 + -2.6 327,903 - +2.0 327,903 - -0.6 327,905 - -1.7 327,916 + +0.4 327,924 + +0.1 327,924 + +0.7 327,924 + +1.3 327,924 + -3.1 327,924 + -0.4 327,926 + -2.6 327,926 + -0.6 327,927 - +0.3 327,980 - +2.8 327,980 - -2.4 327,980 - +0.2
Or see this region's nucleotide sequence