Strain Fitness in Pantoea sp. MT58 around IAI47_15185

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,201,238	+				+1.1
3,201,238	+				+0.3
3,201,238	+				+1.1
3,201,238	+				-0.8
3,201,238	+				+0.9
3,201,238	+				+0.0
3,201,238	+				+0.9
3,201,239	-				+0.4
3,201,239	-				+0.2
3,201,239	-				-1.6
3,201,269	+				+1.2
3,201,270	-				-0.4
3,201,270	-				-1.0
3,201,270	-				+1.2
3,201,276	-				-1.5
3,201,295	-				+0.0
3,201,298	+				-0.7
3,201,299	-				-1.0
3,201,299	-				-0.9
3,201,300	+				-0.5
3,201,301	-				-0.5
3,201,301	-				-0.2
3,201,316	-				-0.1
3,201,324	+				+1.5
3,201,325	-				+0.6
3,201,325	-				-0.3
3,201,343	+				+0.5
3,201,344	-				+0.1
3,201,350	+				-1.2
3,201,351	-				-0.7
3,201,368	+				+0.1
3,201,379	-				-0.5
3,201,428	+				-1.0
3,201,428	+				-0.8
3,201,429	-				-0.9
3,201,496	+				-1.1
3,201,496	+				+1.3
3,201,496	+				-0.1
3,201,496	+				+0.2
3,201,497	-				-1.2
3,201,497	-				+0.1
3,201,497	-				+0.1
3,201,497	-				+0.3
3,201,497	-				-0.2
3,201,497	-				+0.3
3,201,505	+				+0.1
3,201,505	+				+1.1
3,201,505	+				+2.6
3,201,506	-				+1.2
3,201,506	-				-0.7
3,201,506	-				-0.5
3,201,506	-				-0.2
3,201,510	+				-0.6
3,201,510	+				+0.3
3,201,510	+				-0.7
3,201,510	+				-0.4
3,201,510	+				-1.5
3,201,510	+				-1.1
3,201,510	+				+0.9
3,201,510	+				-0.7
3,201,510	+				-0.1
3,201,511	-				-2.7
3,201,511	-				-0.9
3,201,511	-				-0.4
3,201,511	-				-0.2
3,201,511	-				-1.5
3,201,511	-				+1.1
3,201,512	+				-0.7
3,201,512	+				+1.0
3,201,512	+				-1.5
3,201,512	+				-0.1
3,201,512	+				+1.7
3,201,513	-				-0.9
3,201,513	-				+0.8
3,201,513	-				-0.0
3,201,513	-				-1.4
3,201,513	-				-2.4
3,201,513	-				-1.5
3,201,554	+				+0.5
3,201,623	+		IAI47_15180	0.14	+0.1
3,201,623	+		IAI47_15180	0.14	-0.8
3,201,624	-		IAI47_15180	0.14	-1.9
3,201,624	-		IAI47_15180	0.14	-1.1
3,201,635	+		IAI47_15180	0.15	-0.5
3,201,635	+		IAI47_15180	0.15	+0.5
3,201,652	+		IAI47_15180	0.18	-1.1
3,201,652	+				-0.8
3,201,652	+		IAI47_15180	0.18	+0.6
3,201,652	+		IAI47_15180	0.18	-0.1
3,201,652	+		IAI47_15180	0.18	-0.5
3,201,652	+		IAI47_15180	0.18	+0.2
3,201,652	+		IAI47_15180	0.18	+0.3
3,201,652	+		IAI47_15180	0.18	-0.7
3,201,653	-		IAI47_15180	0.18	+1.7
3,201,653	-		IAI47_15180	0.18	-1.8
3,201,653	-		IAI47_15180	0.18	+0.8
3,201,653	-		IAI47_15180	0.18	-1.6
3,201,653	-		IAI47_15180	0.18	-0.8
3,201,653	-		IAI47_15180	0.18	-0.4
3,201,655	-		IAI47_15180	0.18	-0.7
3,201,691	+		IAI47_15180	0.23	+0.9
3,201,727	-		IAI47_15180	0.28	-1.0
3,201,730	+		IAI47_15180	0.28	-0.1
3,201,730	+		IAI47_15180	0.28	+0.5
3,201,730	+		IAI47_15180	0.28	-1.5
3,201,730	+		IAI47_15180	0.28	-1.2
3,201,731	-		IAI47_15180	0.28	-1.1
3,201,731	-		IAI47_15180	0.28	-0.3
3,201,731	-		IAI47_15180	0.28	-0.1
3,201,741	+		IAI47_15180	0.30	+0.1
3,201,742	-		IAI47_15180	0.30	+0.6
3,201,805	+		IAI47_15180	0.38	-0.6
3,201,805	+		IAI47_15180	0.38	+2.0
3,201,806	-		IAI47_15180	0.38	+0.2
3,201,806	-		IAI47_15180	0.38	+0.1
3,201,806	-		IAI47_15180	0.38	-1.4
3,201,888	+		IAI47_15180	0.49	-0.7
3,201,889	-		IAI47_15180	0.49	-0.9
3,201,898	+		IAI47_15180	0.51	-1.0
3,201,898	+		IAI47_15180	0.51	-0.3
3,201,898	+		IAI47_15180	0.51	+0.6
3,201,899	-		IAI47_15180	0.51	-0.2
3,201,899	-		IAI47_15180	0.51	-0.1
3,201,899	-		IAI47_15180	0.51	-1.2
3,201,910	+		IAI47_15180	0.52	+0.2
3,201,910	+		IAI47_15180	0.52	-2.7
3,201,910	+		IAI47_15180	0.52	+2.1
3,201,910	+		IAI47_15180	0.52	-0.9
3,201,910	+		IAI47_15180	0.52	-0.9
3,201,910	+		IAI47_15180	0.52	+0.1
3,201,911	-		IAI47_15180	0.52	-0.9
3,201,933	+		IAI47_15180	0.55	+0.7
3,201,933	+		IAI47_15180	0.55	-2.0
3,201,933	+		IAI47_15180	0.55	-2.5
3,201,933	+		IAI47_15180	0.55	+0.0
3,201,933	+		IAI47_15180	0.55	-0.0
3,201,934	-		IAI47_15180	0.55	-0.3
3,201,934	-		IAI47_15180	0.55	-0.9
3,201,934	-		IAI47_15180	0.55	-0.2
3,201,934	-		IAI47_15180	0.55	-0.5
3,201,949	+		IAI47_15180	0.57	+0.4
3,201,949	+		IAI47_15180	0.57	-1.0
3,201,949	+		IAI47_15180	0.57	-0.7
3,201,949	+		IAI47_15180	0.57	-0.1
3,201,950	-		IAI47_15180	0.58	-3.3
3,201,950	-		IAI47_15180	0.58	-1.1
3,201,950	-		IAI47_15180	0.58	-1.2
3,201,967	+		IAI47_15180	0.60	-0.5
3,201,967	+		IAI47_15180	0.60	+1.0
3,201,967	+		IAI47_15180	0.60	-1.0
3,201,967	+		IAI47_15180	0.60	-1.4
3,201,967	+		IAI47_15180	0.60	+1.2
3,201,967	+		IAI47_15180	0.60	-1.5
3,201,967	+		IAI47_15180	0.60	-0.9
3,201,967	+		IAI47_15180	0.60	+1.1
3,201,967	+		IAI47_15180	0.60	-1.5
3,201,968	-		IAI47_15180	0.60	-0.5
3,201,968	-		IAI47_15180	0.60	-2.6
3,201,969	+		IAI47_15180	0.60	-0.3
3,201,969	+		IAI47_15180	0.60	+0.4
3,201,969	+		IAI47_15180	0.60	-2.1
3,201,969	+		IAI47_15180	0.60	-1.3
3,201,969	+		IAI47_15180	0.60	-0.0
3,201,970	-		IAI47_15180	0.60	-0.9
3,201,970	-		IAI47_15180	0.60	+0.0
3,201,970	-		IAI47_15180	0.60	+0.3
3,201,970	-		IAI47_15180	0.60	+0.5
3,201,984	+		IAI47_15180	0.62	+1.0
3,201,984	+		IAI47_15180	0.62	-0.4
3,201,988	+		IAI47_15180	0.63	-2.1
3,201,988	+		IAI47_15180	0.63	-0.9
3,201,988	+		IAI47_15180	0.63	+1.0
3,201,988	+		IAI47_15180	0.63	-0.4
3,201,989	-		IAI47_15180	0.63	+0.1
3,201,989	-		IAI47_15180	0.63	-0.5
3,201,989	-		IAI47_15180	0.63	-0.9
3,201,989	-		IAI47_15180	0.63	-1.9
3,201,989	-		IAI47_15180	0.63	+1.1
3,201,989	-		IAI47_15180	0.63	+0.9
3,201,989	-		IAI47_15180	0.63	-1.0
3,201,989	-		IAI47_15180	0.63	-2.5
3,201,989	-		IAI47_15180	0.63	-2.5
3,201,989	-		IAI47_15180	0.63	-0.4
3,202,008	+		IAI47_15180	0.65	-1.0
3,202,008	+		IAI47_15180	0.65	-0.9
3,202,009	-		IAI47_15180	0.65	-0.7
3,202,009	-		IAI47_15180	0.65	+1.2
3,202,039	+		IAI47_15180	0.69	-0.2
3,202,039	+		IAI47_15180	0.69	-0.4
3,202,039	+		IAI47_15180	0.69	-1.1
3,202,040	-		IAI47_15180	0.70	-1.8
3,202,040	-		IAI47_15180	0.70	-1.3
3,202,123	+		IAI47_15180	0.81	+0.2
3,202,130	-		IAI47_15180	0.82	-0.4
3,202,130	-		IAI47_15180	0.82	+0.3
3,202,130	-		IAI47_15180	0.82	+0.1
3,202,130	-		IAI47_15180	0.82	+1.1
3,202,141	+		IAI47_15180	0.83	-0.3
3,202,141	+		IAI47_15180	0.83	+0.0
3,202,142	-		IAI47_15180	0.83	+0.3
3,202,142	-				-0.5
3,202,142	-		IAI47_15180	0.83	-1.0
3,202,176	+		IAI47_15180	0.88	-0.4
3,202,176	+		IAI47_15180	0.88	-1.8
3,202,177	-		IAI47_15180	0.88	-1.2
3,202,180	+		IAI47_15180	0.88	+0.1
3,202,180	+		IAI47_15180	0.88	+1.0
3,202,180	+		IAI47_15180	0.88	+0.2
3,202,180	+		IAI47_15180	0.88	-0.5
3,202,180	+		IAI47_15180	0.88	-0.5
3,202,180	+		IAI47_15180	0.88	-1.1
3,202,180	+		IAI47_15180	0.88	-0.4
3,202,180	+		IAI47_15180	0.88	+0.1
3,202,181	-		IAI47_15180	0.88	-0.3
3,202,181	-		IAI47_15180	0.88	+0.2
3,202,181	-		IAI47_15180	0.88	-0.8
3,202,212	-				+1.2
3,202,265	-				+0.6
3,202,323	+		IAI47_15185	0.11	-0.2
3,202,324	-		IAI47_15185	0.11	-0.5
3,202,393	+		IAI47_15185	0.20	-1.1
3,202,393	+		IAI47_15185	0.20	-1.5
3,202,463	+		IAI47_15185	0.29	-1.5
3,202,488	+		IAI47_15185	0.33	+0.8
3,202,489	-		IAI47_15185	0.33	-3.0
3,202,489	-		IAI47_15185	0.33	-1.0
3,202,691	+		IAI47_15185	0.59	-0.7
3,202,691	+		IAI47_15185	0.59	-1.0
3,202,691	+		IAI47_15185	0.59	+1.2
3,202,691	+		IAI47_15185	0.59	+0.2
3,202,691	+		IAI47_15185	0.59	-0.7
3,202,692	-		IAI47_15185	0.59	-1.0
3,202,692	-		IAI47_15185	0.59	+1.1
3,202,692	-		IAI47_15185	0.59	-0.5
3,202,692	-		IAI47_15185	0.59	-0.1
3,202,722	+		IAI47_15185	0.63	-0.6
3,202,773	+		IAI47_15185	0.70	+0.9
3,202,774	-		IAI47_15185	0.70	-0.7
3,202,806	-		IAI47_15185	0.74	-0.4
3,202,836	+		IAI47_15185	0.78	+0.4
3,202,837	-		IAI47_15185	0.78	-1.1
3,202,857	+		IAI47_15185	0.81	-0.4
3,202,857	+		IAI47_15185	0.81	+0.7
3,202,858	-		IAI47_15185	0.81	+0.9
3,202,858	-		IAI47_15185	0.81	+2.3
3,202,864	-		IAI47_15185	0.82	+1.3
3,202,864	-		IAI47_15185	0.82	-0.0
3,202,875	+		IAI47_15185	0.83	-0.6
3,202,876	-		IAI47_15185	0.83	-0.8
3,202,876	-		IAI47_15185	0.83	-0.9
3,202,876	-		IAI47_15185	0.83	-0.0
3,202,884	-		IAI47_15185	0.84	+0.1
3,202,891	-		IAI47_15185	0.85	+0.4
3,202,947	+				-0.9
3,202,962	+				-0.4
3,202,962	+				-0.7
3,202,962	+				+0.2
3,202,963	-				-2.2
3,202,963	-				-1.8
3,203,004	+				+1.1
3,203,004	+				-0.0
3,203,004	+				-1.1
3,203,004	+				-0.5
3,203,004	+				-0.1
3,203,004	+				-0.4
3,203,004	+				-0.7
3,203,004	+				-0.9
3,203,005	-				-1.2
3,203,005	-				+0.8
3,203,005	-				-0.9
3,203,005	-				-1.1
3,203,005	-				+0.6
3,203,005	-				-0.9
3,203,005	-				+1.7
3,203,005	-				-2.0
3,203,005	-				+0.9
3,203,005	-				+1.2
3,203,005	-				-0.5
3,203,005	-				-0.4
3,203,008	+				+1.8
3,203,008	+				-0.9
3,203,009	-				+1.5
3,203,021	+				-0.3
3,203,021	+				-0.3
3,203,022	-				-1.6
3,203,022	-				-0.2
3,203,056	-				-0.1
3,203,056	-				-0.7
3,203,649	-				+1.8
3,203,659	-				-1.4
3,203,724	+				+1.3
3,203,724	+				-1.0
3,203,724	+				+0.2
3,203,734	+				-0.5
3,203,734	+				+0.5
3,203,734	+				-0.4
3,203,735	-				+0.5
3,203,735	-				+1.3
3,203,735	-				+0.0
3,203,735	-				-0.3
3,203,735	-				-0.5
3,203,735	-				+1.1
3,203,737	-				-1.3
3,203,765	+				-0.1
3,203,766	-				+0.1
3,203,793	-				-0.5
3,203,835	-				+0.3
3,203,835	-				-0.0
3,203,835	-				+1.0
3,203,835	-				-0.9
3,203,846	+				+1.1
3,203,846	+				-2.6
3,203,847	-				+0.9
3,203,847	-				-0.2
3,203,848	+				-0.2
3,203,865	+				+0.1
3,203,885	+				+0.4
3,203,885	+				+1.1
3,203,885	+				-1.5
3,203,885	+				+1.6
3,203,886	-				-0.1
3,203,886	-				+0.6
3,203,886	-				-2.5
3,203,902	+				+1.2
3,203,902	+				+0.5
3,203,902	+				+2.4
3,203,937	+				-0.7
3,203,937	+				+1.3
3,203,953	+				-0.8