Strain Fitness in Pantoea sp. MT58 around IAI47_15165

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,197,134	+		IAI47_15160	0.36	-0.1
3,197,134	+		IAI47_15160	0.36	+2.2
3,197,156	+		IAI47_15160	0.38	+0.7
3,197,183	+		IAI47_15160	0.40	+0.6
3,197,183	+		IAI47_15160	0.40	+0.4
3,197,183	+		IAI47_15160	0.40	-1.4
3,197,183	+		IAI47_15160	0.40	-0.4
3,197,184	-		IAI47_15160	0.40	-0.1
3,197,184	-		IAI47_15160	0.40	+0.4
3,197,184	-		IAI47_15160	0.40	+1.9
3,197,184	-		IAI47_15160	0.40	-0.1
3,197,195	+		IAI47_15160	0.40	+0.9
3,197,328	-		IAI47_15160	0.49	+0.9
3,197,411	+		IAI47_15160	0.55	-1.4
3,197,411	+		IAI47_15160	0.55	+0.5
3,197,412	-		IAI47_15160	0.55	-1.4
3,197,429	+		IAI47_15160	0.56	-1.9
3,197,430	-		IAI47_15160	0.56	-0.7
3,197,585	+		IAI47_15160	0.66	+0.2
3,197,627	+		IAI47_15160	0.69	-2.1
3,197,627	+		IAI47_15160	0.69	+0.2
3,197,627	+		IAI47_15160	0.69	+0.9
3,197,627	+		IAI47_15160	0.69	-0.1
3,197,627	+		IAI47_15160	0.69	+1.8
3,197,628	-		IAI47_15160	0.69	-1.4
3,197,628	-		IAI47_15160	0.69	+0.7
3,197,732	+		IAI47_15160	0.76	+0.3
3,197,733	-		IAI47_15160	0.76	-1.2
3,197,734	+		IAI47_15160	0.76	-0.4
3,197,734	+		IAI47_15160	0.76	-0.0
3,197,734	+		IAI47_15160	0.76	-0.0
3,197,734	+		IAI47_15160	0.76	+0.8
3,197,734	+		IAI47_15160	0.76	-0.9
3,197,735	-		IAI47_15160	0.76	-1.1
3,197,735	-		IAI47_15160	0.76	+0.3
3,197,735	-		IAI47_15160	0.76	-2.1
3,197,882	+		IAI47_15160	0.86	-0.1
3,197,882	+		IAI47_15160	0.86	+0.1
3,197,883	-		IAI47_15160	0.86	-0.6
3,197,942	+				-0.9
3,197,943	-				+0.3
3,197,943	-				+0.6
3,197,943	-				+0.5
3,197,946	+				+0.2
3,197,946	+				-0.4
3,197,946	+				-0.4
3,197,947	-				-0.7
3,197,947	-				+0.5
3,197,980	+				+0.3
3,197,980	+				+0.2
3,198,066	+				-0.6
3,198,066	+				+0.3
3,198,067	-				+0.4
3,198,067	-				-1.9
3,198,158	+				-0.0
3,198,186	+				-0.9
3,198,186	+				+0.7
3,198,186	+				-0.6
3,198,186	+				-0.4
3,198,187	-				+0.4
3,198,238	+		IAI47_15165	0.15	-2.4
3,198,238	+		IAI47_15165	0.15	-0.5
3,198,238	+		IAI47_15165	0.15	+0.0
3,198,239	-		IAI47_15165	0.15	-1.8
3,198,250	+		IAI47_15165	0.16	-0.2
3,198,250	+		IAI47_15165	0.16	-0.2
3,198,251	-		IAI47_15165	0.16	-0.2
3,198,251	-		IAI47_15165	0.16	+2.1
3,198,251	-		IAI47_15165	0.16	-2.3
3,198,275	-		IAI47_15165	0.19	-0.4
3,198,275	-		IAI47_15165	0.19	+0.3
3,198,386	+		IAI47_15165	0.30	-2.4
3,198,387	-		IAI47_15165	0.30	-2.2
3,198,417	+		IAI47_15165	0.33	-0.1
3,198,418	-		IAI47_15165	0.33	-1.3
3,198,418	-		IAI47_15165	0.33	-0.9
3,198,539	+		IAI47_15165	0.45	+0.5
3,198,539	+		IAI47_15165	0.45	-0.1
3,198,539	+		IAI47_15165	0.45	-0.9
3,198,539	+		IAI47_15165	0.45	+0.5
3,198,539	+		IAI47_15165	0.45	-0.1
3,198,540	-		IAI47_15165	0.45	-2.5
3,198,590	-		IAI47_15165	0.50	+1.1
3,198,605	-		IAI47_15165	0.51	+0.5
3,198,719	+		IAI47_15165	0.63	-1.4
3,198,769	+		IAI47_15165	0.68	+0.3
3,198,769	+		IAI47_15165	0.68	+0.7
3,198,769	+		IAI47_15165	0.68	-1.9
3,198,770	-		IAI47_15165	0.68	+0.5
3,198,791	+		IAI47_15165	0.70	-1.5
3,198,791	+		IAI47_15165	0.70	+0.4
3,198,791	+		IAI47_15165	0.70	+1.4
3,198,791	+		IAI47_15165	0.70	+0.5
3,198,791	+		IAI47_15165	0.70	-0.3
3,198,791	+		IAI47_15165	0.70	-0.7
3,198,792	-		IAI47_15165	0.70	+1.4
3,198,792	-		IAI47_15165	0.70	-1.6
3,198,792	-		IAI47_15165	0.70	-1.4
3,198,792	-		IAI47_15165	0.70	+0.1
3,198,795	+		IAI47_15165	0.70	+0.4
3,198,795	+		IAI47_15165	0.70	+0.6
3,198,796	-		IAI47_15165	0.71	-1.3
3,198,796	-		IAI47_15165	0.71	-0.5
3,198,796	-		IAI47_15165	0.71	+0.9
3,198,796	-		IAI47_15165	0.71	-0.5
3,198,796	-		IAI47_15165	0.71	+0.3
3,198,796	-		IAI47_15165	0.71	+0.8
3,198,796	-		IAI47_15165	0.71	-1.3
3,198,878	+		IAI47_15165	0.79	-1.8
3,199,016	+				+0.6
3,199,017	-				-0.5
3,199,020	-				-0.9
3,199,033	+				-1.1
3,199,033	+				+0.5
3,199,033	+				+0.7
3,199,033	+				+1.1
3,199,034	-				+0.6
3,199,034	-				-0.8
3,199,034	-				+0.6
3,199,034	-				+0.9
3,199,034	-				-0.6
3,199,036	+				+0.2
3,199,036	+				+0.8
3,199,036	+				+0.5
3,199,037	-				+0.2
3,199,037	-				-1.1
3,199,037	-				+1.9
3,199,056	+				-1.1
3,199,057	-				+0.9
3,199,073	+				-1.6
3,199,073	+				-0.5
3,199,073	+				-0.8
3,199,073	+				-0.2
3,199,073	+				+1.6
3,199,073	+				-0.9
3,199,073	+				-0.8
3,199,073	+				+1.7
3,199,073	+				+1.0
3,199,073	+				+0.3
3,199,074	-				-0.2
3,199,074	-				-0.7
3,199,074	-				-0.7
3,199,074	-				-0.4
3,199,074	-				-0.3
3,199,074	-				-0.6
3,199,074	-				+0.6
3,199,075	+				-1.7
3,199,100	-				+0.6
3,199,111	+				-1.0
3,199,111	+				-1.0
3,199,111	+				-0.2
3,199,112	-				-1.4
3,199,112	-				-0.5
3,199,127	-				+2.3
3,199,232	+		IAI47_15170	0.11	-1.9
3,199,233	-		IAI47_15170	0.11	-2.4
3,199,319	+		IAI47_15170	0.19	-0.2
3,199,319	+		IAI47_15170	0.19	+0.9
3,199,320	-		IAI47_15170	0.19	+1.0
3,199,396	-		IAI47_15170	0.26	+0.5
3,199,396	-		IAI47_15170	0.26	-0.2
3,199,396	-		IAI47_15170	0.26	-2.0
3,199,396	-		IAI47_15170	0.26	+1.7
3,199,421	+		IAI47_15170	0.29	+0.4
3,199,431	+		IAI47_15170	0.29	+1.4
3,199,499	-		IAI47_15170	0.36	-2.4
3,199,499	-		IAI47_15170	0.36	-0.0
3,199,502	+		IAI47_15170	0.36	+0.1
3,199,502	+		IAI47_15170	0.36	+0.1
3,199,502	+		IAI47_15170	0.36	+0.8
3,199,575	-		IAI47_15170	0.43	-1.5
3,199,575	-		IAI47_15170	0.43	+0.3
3,199,575	-		IAI47_15170	0.43	-1.2
3,199,601	+		IAI47_15170	0.45	-1.2
3,199,602	-		IAI47_15170	0.46	+0.5
3,199,602	-		IAI47_15170	0.46	-2.4
3,199,656	+		IAI47_15170	0.51	+0.9
3,199,656	+		IAI47_15170	0.51	-0.0
3,199,656	+		IAI47_15170	0.51	-0.5
3,199,657	-		IAI47_15170	0.51	-1.1
3,199,657	-		IAI47_15170	0.51	-0.4
3,199,657	-		IAI47_15170	0.51	-2.4
3,199,726	+		IAI47_15170	0.57	+0.3
3,199,726	+		IAI47_15170	0.57	+1.3
3,199,727	-		IAI47_15170	0.57	+0.1
3,199,727	-		IAI47_15170	0.57	-0.6
3,199,727	-		IAI47_15170	0.57	+0.5
3,199,727	-		IAI47_15170	0.57	-0.7
3,199,771	-		IAI47_15170	0.61	-0.3
3,199,830	+		IAI47_15170	0.67	+0.1
3,199,830	+		IAI47_15170	0.67	-1.4
3,199,830	+		IAI47_15170	0.67	-0.1
3,199,830	+		IAI47_15170	0.67	+1.8
3,199,872	+		IAI47_15170	0.71	-1.5
3,199,872	+		IAI47_15170	0.71	-0.9
3,199,872	+		IAI47_15170	0.71	+1.8
3,199,872	+		IAI47_15170	0.71	+0.3
3,199,873	-		IAI47_15170	0.71	-1.0
3,199,873	-		IAI47_15170	0.71	-0.3
3,199,873	-		IAI47_15170	0.71	+0.8
3,199,873	-		IAI47_15170	0.71	+1.9
3,199,877	+		IAI47_15170	0.71	-0.4
3,199,877	+		IAI47_15170	0.71	+1.2
3,199,877	+		IAI47_15170	0.71	+1.6
3,199,877	+		IAI47_15170	0.71	+0.4
3,199,877	+		IAI47_15170	0.71	-2.0
3,199,877	+		IAI47_15170	0.71	-0.5
3,199,877	+		IAI47_15170	0.71	+1.4
3,199,877	+		IAI47_15170	0.71	-1.5
3,199,877	+		IAI47_15170	0.71	-0.4
3,199,878	-		IAI47_15170	0.71	+0.4
3,199,878	-		IAI47_15170	0.71	-1.6
3,199,878	-		IAI47_15170	0.71	-1.1
3,199,878	-		IAI47_15170	0.71	-1.1
3,199,878	-		IAI47_15170	0.71	-2.3
3,199,878	-		IAI47_15170	0.71	+1.0
3,199,955	+		IAI47_15170	0.79	+0.7
3,199,955	+		IAI47_15170	0.79	+0.1
3,199,955	+		IAI47_15170	0.79	-1.4
3,199,955	+		IAI47_15170	0.79	+0.6
3,199,956	-		IAI47_15170	0.79	+0.1
3,199,976	+		IAI47_15170	0.81	+0.2
3,199,976	+		IAI47_15170	0.81	+0.7
3,199,977	-		IAI47_15170	0.81	+1.9
3,199,977	-		IAI47_15170	0.81	-1.3
3,200,025	+		IAI47_15170	0.85	+0.0
3,200,026	-		IAI47_15170	0.85	-0.3