Strain Fitness in Pantoea sp. MT58 around IAI47_12280

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,594,189	+		IAI47_12275	0.61	-2.1
2,594,189	+		IAI47_12275	0.61	-2.3
2,594,190	-		IAI47_12275	0.61	+0.1
2,594,299	+		IAI47_12275	0.65	-3.9
2,594,299	+		IAI47_12275	0.65	-2.9
2,594,299	+		IAI47_12275	0.65	-1.9
2,594,299	+		IAI47_12275	0.65	-2.7
2,594,299	+		IAI47_12275	0.65	-2.8
2,594,300	-		IAI47_12275	0.66	-2.8
2,594,300	-		IAI47_12275	0.66	-1.4
2,594,300	-		IAI47_12275	0.66	-3.0
2,594,300	-		IAI47_12275	0.66	-2.2
2,594,317	+		IAI47_12275	0.66	-2.4
2,594,317	+		IAI47_12275	0.66	-2.5
2,594,383	+		IAI47_12275	0.69	-1.9
2,594,405	+		IAI47_12275	0.70	-1.8
2,594,406	-		IAI47_12275	0.70	-2.9
2,594,406	-		IAI47_12275	0.70	-1.9
2,594,406	-		IAI47_12275	0.70	-3.7
2,594,417	+		IAI47_12275	0.70	-2.7
2,594,417	+		IAI47_12275	0.70	-2.5
2,594,418	-		IAI47_12275	0.70	-2.1
2,594,418	-		IAI47_12275	0.70	-4.7
2,594,429	+		IAI47_12275	0.71	-2.4
2,594,429	+		IAI47_12275	0.71	-2.8
2,594,429	+		IAI47_12275	0.71	-3.2
2,594,430	-		IAI47_12275	0.71	-2.5
2,594,430	-		IAI47_12275	0.71	-1.7
2,594,430	-		IAI47_12275	0.71	-3.8
2,594,430	-		IAI47_12275	0.71	-1.5
2,594,470	+		IAI47_12275	0.72	-2.8
2,594,471	-		IAI47_12275	0.72	-2.2
2,594,471	-		IAI47_12275	0.72	-1.4
2,594,477	+		IAI47_12275	0.72	-3.8
2,594,477	+		IAI47_12275	0.72	-4.0
2,594,478	-		IAI47_12275	0.73	-1.1
2,594,478	-		IAI47_12275	0.73	-3.6
2,594,478	-		IAI47_12275	0.73	-0.6
2,594,478	-		IAI47_12275	0.73	-1.2
2,594,478	-		IAI47_12275	0.73	-2.0
2,594,482	+		IAI47_12275	0.73	-1.5
2,594,482	+		IAI47_12275	0.73	-1.5
2,594,482	+		IAI47_12275	0.73	-3.1
2,594,483	-		IAI47_12275	0.73	-2.4
2,594,483	-		IAI47_12275	0.73	-2.2
2,594,483	-		IAI47_12275	0.73	-3.5
2,594,483	-		IAI47_12275	0.73	-4.6
2,594,560	-		IAI47_12275	0.76	-1.9
2,594,560	-		IAI47_12275	0.76	-2.4
2,594,592	+		IAI47_12275	0.77	-4.6
2,594,592	+		IAI47_12275	0.77	-2.1
2,594,593	-		IAI47_12275	0.77	-2.9
2,594,593	-		IAI47_12275	0.77	-3.1
2,594,593	-		IAI47_12275	0.77	-2.5
2,594,593	-		IAI47_12275	0.77	-2.0
2,594,593	-		IAI47_12275	0.77	-3.1
2,594,596	+		IAI47_12275	0.77	-3.4
2,594,596	+		IAI47_12275	0.77	-0.2
2,594,596	+		IAI47_12275	0.77	-1.2
2,594,596	+		IAI47_12275	0.77	-2.9
2,594,596	+		IAI47_12275	0.77	-2.0
2,594,596	+		IAI47_12275	0.77	-1.9
2,594,596	+		IAI47_12275	0.77	-2.9
2,594,597	-		IAI47_12275	0.77	-2.8
2,594,597	-		IAI47_12275	0.77	-2.6
2,594,597	-		IAI47_12275	0.77	-2.4
2,594,597	-		IAI47_12275	0.77	-1.0
2,594,597	-		IAI47_12275	0.77	-3.6
2,594,674	+		IAI47_12275	0.80	-2.7
2,594,674	+		IAI47_12275	0.80	-2.7
2,594,674	+		IAI47_12275	0.80	-3.0
2,594,675	-		IAI47_12275	0.80	-3.2
2,594,675	-		IAI47_12275	0.80	-2.3
2,594,685	-		IAI47_12275	0.81	-3.0
2,594,685	-		IAI47_12275	0.81	-2.6
2,594,696	-		IAI47_12275	0.81	-2.3
2,594,696	-		IAI47_12275	0.81	-2.0
2,594,696	-		IAI47_12275	0.81	-1.6
2,594,696	-		IAI47_12275	0.81	-3.4
2,594,696	-		IAI47_12275	0.81	-2.2
2,594,696	-		IAI47_12275	0.81	-0.6
2,594,722	-		IAI47_12275	0.82	-3.1
2,594,722	-		IAI47_12275	0.82	-2.8
2,594,936	-				-2.9
2,594,936	-				-3.3
2,595,148	+				-3.3
2,595,148	+				-3.0
2,595,149	-				-3.9
2,595,149	-				-4.1
2,595,149	-				-4.4
2,595,161	+				-2.2
2,595,161	+				-4.0
2,595,161	+				-2.1
2,595,161	+				-0.6
2,595,161	+				-2.3
2,595,162	-				-1.2
2,595,162	-				-2.9
2,595,173	+				-2.1
2,595,174	-				-1.7
2,595,188	-				-2.2
2,595,194	+				-0.4
2,595,194	+				-2.5
2,595,194	+				-1.3
2,595,195	-				-3.4
2,595,195	-				-2.9
2,595,195	-				-3.3
2,595,195	-				-4.4
2,595,195	-				-2.0
2,595,315	+				-4.0
2,595,316	-				-1.5
2,595,317	+				-2.8
2,595,317	+				-2.4
2,595,317	+				-1.9
2,595,318	-				-2.2
2,595,318	-				-3.3
2,595,318	-				-1.9
2,595,323	-				-1.3
2,595,323	-				-1.4
2,595,323	-				-2.0
2,595,323	-				-1.6
2,595,323	-				-3.3
2,595,323	-				-2.9
2,595,323	-				-1.6
2,595,396	+		IAI47_12280	0.15	-2.7
2,595,396	+		IAI47_12280	0.15	-2.0
2,595,396	+		IAI47_12280	0.15	-2.2
2,595,396	+		IAI47_12280	0.15	-1.8
2,595,397	-		IAI47_12280	0.15	-3.3
2,595,397	-		IAI47_12280	0.15	-1.6
2,595,397	-		IAI47_12280	0.15	-1.7
2,595,397	-		IAI47_12280	0.15	-2.6
2,595,397	-		IAI47_12280	0.15	-2.5
2,595,397	-		IAI47_12280	0.15	-2.7
2,595,397	-		IAI47_12280	0.15	-2.8
2,595,397	-		IAI47_12280	0.15	-4.0
2,595,397	-		IAI47_12280	0.15	-3.1
2,595,462	+		IAI47_12280	0.19	-1.9
2,595,462	+		IAI47_12280	0.19	-0.9
2,595,463	-		IAI47_12280	0.19	-1.8
2,595,463	-		IAI47_12280	0.19	-1.9
2,595,560	+		IAI47_12280	0.25	-2.4
2,595,561	-		IAI47_12280	0.25	-3.1
2,595,561	-		IAI47_12280	0.25	-2.4
2,595,580	-		IAI47_12280	0.27	-1.8
2,595,580	-		IAI47_12280	0.27	-3.6
2,595,722	+		IAI47_12280	0.36	-3.1
2,595,723	-		IAI47_12280	0.36	-1.4
2,595,743	+		IAI47_12280	0.37	-2.9
2,595,743	+		IAI47_12280	0.37	-2.1
2,595,743	+		IAI47_12280	0.37	-2.5
2,595,744	-		IAI47_12280	0.37	-1.6
2,595,832	-		IAI47_12280	0.43	-2.2
2,595,868	-		IAI47_12280	0.45	-2.9
2,595,951	+		IAI47_12280	0.51	-1.5
2,595,951	+		IAI47_12280	0.51	-2.9
2,595,951	+		IAI47_12280	0.51	-1.7
2,595,952	-		IAI47_12280	0.51	-2.1
2,595,952	-		IAI47_12280	0.51	-4.2
2,595,988	-		IAI47_12280	0.53	-2.8
2,595,998	+		IAI47_12280	0.54	-2.6
2,595,999	-		IAI47_12280	0.54	-3.5
2,596,005	+		IAI47_12280	0.54	-2.5
2,596,005	+		IAI47_12280	0.54	-0.9
2,596,055	+		IAI47_12280	0.57	-2.5
2,596,056	-		IAI47_12280	0.58	-1.4
2,596,091	+		IAI47_12280	0.60	-2.1
2,596,091	+		IAI47_12280	0.60	-2.7
2,596,091	+		IAI47_12280	0.60	-3.3
2,596,091	+		IAI47_12280	0.60	-1.5
2,596,091	+		IAI47_12280	0.60	-2.1
2,596,092	-		IAI47_12280	0.60	-3.7
2,596,092	-		IAI47_12280	0.60	-3.1
2,596,092	-		IAI47_12280	0.60	-2.0
2,596,092	-		IAI47_12280	0.60	-3.2
2,596,119	+		IAI47_12280	0.62	-1.8
2,596,120	-		IAI47_12280	0.62	-1.1
2,596,212	-		IAI47_12280	0.68	-1.6
2,596,241	+		IAI47_12280	0.70	-1.6
2,596,242	-		IAI47_12280	0.70	-2.9
2,596,242	-		IAI47_12280	0.70	-2.4
2,596,242	-		IAI47_12280	0.70	-2.5
2,596,279	-		IAI47_12280	0.72	-2.3
2,596,298	+		IAI47_12280	0.73	-1.8
2,596,299	-		IAI47_12280	0.73	-1.8
2,596,354	+		IAI47_12280	0.77	-2.1
2,596,354	+		IAI47_12280	0.77	-1.7
2,596,354	+		IAI47_12280	0.77	-2.9
2,596,354	+		IAI47_12280	0.77	-2.1
2,596,355	-		IAI47_12280	0.77	-1.7
2,596,355	-		IAI47_12280	0.77	-2.4
2,596,355	-		IAI47_12280	0.77	-2.3
2,596,355	-		IAI47_12280	0.77	-2.9
2,596,385	+		IAI47_12280	0.79	-1.9
2,596,385	+		IAI47_12280	0.79	-3.1
2,596,385	+		IAI47_12280	0.79	-2.1
2,596,385	+		IAI47_12280	0.79	-2.8
2,596,385	+		IAI47_12280	0.79	-3.0
2,596,385	+		IAI47_12280	0.79	-2.1
2,596,386	-		IAI47_12280	0.79	-1.7
2,596,386	-		IAI47_12280	0.79	-2.5
2,596,386	-		IAI47_12280	0.79	-1.4
2,596,386	-		IAI47_12280	0.79	-1.9
2,596,390	-		IAI47_12280	0.79	-1.8
2,596,442	-		IAI47_12280	0.83	-2.2
2,596,445	+		IAI47_12280	0.83	-2.2
2,596,445	+		IAI47_12280	0.83	-3.5
2,596,445	+		IAI47_12280	0.83	-1.2
2,596,445	+		IAI47_12280	0.83	-1.1
2,596,445	+		IAI47_12280	0.83	-1.7
2,596,445	+		IAI47_12280	0.83	-0.6
2,596,446	-		IAI47_12280	0.83	-2.4
2,596,446	-		IAI47_12280	0.83	-1.1
2,596,446	-		IAI47_12280	0.83	-0.6
2,596,446	-		IAI47_12280	0.83	-0.2
2,596,446	-		IAI47_12280	0.83	-1.4
2,596,446	-		IAI47_12280	0.83	-2.9
2,596,460	+		IAI47_12280	0.84	-0.6
2,596,460	+		IAI47_12280	0.84	-1.9
2,596,460	+		IAI47_12280	0.84	-2.8
2,596,460	+		IAI47_12280	0.84	-2.7
2,596,460	+		IAI47_12280	0.84	-2.3
2,596,461	-		IAI47_12280	0.84	-1.7
2,596,461	-		IAI47_12280	0.84	-1.9
2,596,461	-		IAI47_12280	0.84	-3.9
2,596,461	-		IAI47_12280	0.84	-2.8
2,596,461	-		IAI47_12280	0.84	-3.3
2,596,461	-		IAI47_12280	0.84	-1.3
2,596,461	-		IAI47_12280	0.84	-2.5
2,596,461	-		IAI47_12280	0.84	-3.6
2,596,507	-		IAI47_12280	0.87	-1.6
2,596,507	-		IAI47_12280	0.87	-1.4
2,596,516	-		IAI47_12280	0.88	-1.1
2,596,533	-		IAI47_12280	0.89	-2.2
2,596,533	-		IAI47_12280	0.89	-2.6
2,596,567	+				-3.8
2,596,568	-				-2.4
2,596,568	-				-2.3
2,596,568	-				-2.9
2,596,578	+				-1.2
2,596,624	+				-1.3
2,596,624	+				-2.7
2,596,625	-				-1.7
2,596,638	+				-3.4
2,596,653	+				-2.7
2,596,654	-				-2.3
2,596,661	+				-0.6
2,596,661	+				-2.9
2,596,662	-				-0.6
2,596,683	+				-2.7
2,596,684	-				-3.4
2,596,696	+				-1.9
2,596,697	-				-1.5
2,596,759	-				+0.9
2,596,759	-				-1.7
2,596,773	+				-2.9
2,596,773	+				-1.9
2,596,774	-				+0.9
2,596,787	-				-2.0
2,596,806	+				-0.4
2,596,806	+				+0.8
2,596,806	+				-0.4
2,596,806	+				-0.5
2,596,807	-				+0.1
2,596,807	-				+1.5
2,596,807	-				+1.0
2,596,852	+				+0.5
2,596,861	+				+0.5
2,596,861	+				+0.7
2,596,861	+				+0.4
2,596,862	-				+0.2
2,596,862	-				+0.6
2,596,862	-				-1.0
2,596,862	-				-0.6
2,596,862	-				+0.6
2,596,862	-				+0.6
2,596,868	+				-0.7
2,596,883	+				-0.2
2,596,883	+				+1.1
2,596,883	+				-1.9
2,596,883	+				-0.3
2,596,883	+				-0.1
2,596,883	+				+0.2
2,596,883	+				-0.4
2,596,884	-				+0.8
2,596,884	-				-0.6
2,596,884	-				+1.8
2,596,884	-				+1.3
2,596,884	-				+0.6
2,596,884	-				-1.0
2,596,884	-				-1.2
2,596,884	-				+0.4
2,596,886	+				-0.4
2,596,886	+				-0.9
2,596,886	+				+0.5
2,596,887	-				+0.1
2,596,887	-				+1.2
2,596,887	-				+0.2
2,596,888	+				-0.6
2,596,888	+				-0.1
2,596,888	+				+0.8
2,596,888	+				+2.3
2,596,888	+				+1.4
2,596,888	+				+0.1
2,596,888	+				+2.2
2,596,888	+				-0.2
2,596,888	+				+1.8
2,596,888	+				-0.6
2,596,889	-				-0.9
2,596,889	-				-1.0
2,596,889	-				+1.0
2,596,889	-				+0.9
2,596,889	-				+0.2
2,596,889	-				+0.9
2,596,889	-				+1.4
2,596,889	-				-1.4
2,596,889	-				+0.5
2,596,889	-				-0.1
2,596,889	-				-1.5
2,596,924	+				-0.9
2,596,924	+				+1.0
2,596,924	+				+0.2
2,596,924	+				+0.8
2,596,925	-				-0.2
2,596,925	-				+0.5
2,596,925	-				+0.9
2,596,925	-				-1.5
2,596,952	+				-0.8
2,596,952	+				+0.6
2,596,952	+				-0.0
2,596,952	+				-1.4
2,596,952	+				+0.8
2,596,952	+				-0.4
2,596,952	+				+0.6
2,596,952	+				+0.6
2,596,953	-				-0.1
2,596,953	-				+0.8
2,596,956	+				+0.8
2,596,956	+				-1.6
2,596,956	+				-0.5
2,596,956	+				-0.0
2,596,957	-				-0.5
2,596,957	-				+0.4
2,596,957	-				-1.3
2,596,957	-				+0.1
2,596,957	-				+2.3
2,596,957	-				-1.3
2,596,957	-				+3.0
2,596,957	-				+0.3
2,596,957	-				-2.4
2,596,957	-				+2.6
2,596,957	-				+2.1
2,596,957	-				+1.6
2,596,957	-				+0.3
2,596,975	+				+0.2
2,596,975	+				+0.6
2,596,975	+				-0.4
2,596,976	-				+0.6
2,596,976	-				-0.0
2,596,981	+				+0.5
2,596,981	+				+1.0
2,596,982	-				-0.1
2,596,982	-				+1.3
2,596,982	-				-0.6
2,596,982	-				+0.8
2,596,986	+				-2.1
2,596,986	+				-1.1
2,596,987	-				-0.8
2,597,003	+				-0.5
2,597,004	-				-0.6
2,597,004	-				-0.6
2,597,004	-				+0.9
2,597,019	+				+0.4
2,597,020	-				+0.7
2,597,020	-				+0.1
2,597,027	+				-1.4
2,597,027	+				-1.4
2,597,027	+				-1.9
2,597,028	-				+1.4
2,597,028	-				-0.1
2,597,037	+				+0.0
2,597,037	+				+0.3
2,597,037	+				-0.4
2,597,038	-				+1.4
2,597,038	-				-1.0
2,597,038	-				+0.6
2,597,046	+				+0.6
2,597,046	+				+2.3
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2,597,152	+		IAI47_12285	0.16	-0.5
2,597,152	+		IAI47_12285	0.16	+0.1
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2,597,153	-		IAI47_12285	0.16	-0.0
2,597,181	-		IAI47_12285	0.18	+0.1
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2,597,189	+		IAI47_12285	0.19	-0.3
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2,597,199	-		IAI47_12285	0.20	-2.0
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2,597,199	-		IAI47_12285	0.20	+1.2
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2,597,321	-		IAI47_12285	0.30	+0.3
2,597,321	-		IAI47_12285	0.30	-0.6
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2,597,482	+		IAI47_12285	0.45	+0.7
2,597,483	-		IAI47_12285	0.45	+0.4
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2,597,518	-		IAI47_12285	0.48	-0.4
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2,597,564	-		IAI47_12285	0.52	-0.1
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2,597,564	-		IAI47_12285	0.52	-0.6
2,597,566	-		IAI47_12285	0.52	-0.6
2,597,566	-		IAI47_12285	0.52	-1.8
2,597,595	+		IAI47_12285	0.55	+1.1
2,597,595	+		IAI47_12285	0.55	-1.5
2,597,596	-		IAI47_12285	0.55	+0.4
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2,597,628	-		IAI47_12285	0.57	-0.7
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2,597,699	-		IAI47_12285	0.64	+0.6
2,597,699	-		IAI47_12285	0.64	-1.5
2,597,699	-		IAI47_12285	0.64	+1.4
2,597,699	-		IAI47_12285	0.64	-1.1