Strain Fitness in Pantoea sp. MT58 around IAI47_08270

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,748,609	+		IAI47_08265	0.68	+0.2
1,748,616	+		IAI47_08265	0.68	+0.4
1,748,618	+		IAI47_08265	0.68	+0.5
1,748,618	+		IAI47_08265	0.68	+0.8
1,748,619	-		IAI47_08265	0.68	-2.2
1,748,619	-		IAI47_08265	0.68	+1.1
1,748,619	-		IAI47_08265	0.68	-2.4
1,748,619	-		IAI47_08265	0.68	-0.2
1,748,619	-		IAI47_08265	0.68	-1.0
1,748,619	-		IAI47_08265	0.68	+3.4
1,748,619	-		IAI47_08265	0.68	-1.7
1,748,619	-		IAI47_08265	0.68	-0.2
1,748,751	+		IAI47_08265	0.76	-0.7
1,748,751	+		IAI47_08265	0.76	-2.5
1,748,751	+		IAI47_08265	0.76	+2.1
1,748,751	+		IAI47_08265	0.76	+0.7
1,748,751	+		IAI47_08265	0.76	+0.2
1,748,751	+		IAI47_08265	0.76	-0.3
1,748,751	+		IAI47_08265	0.76	-0.8
1,748,752	-		IAI47_08265	0.76	+0.3
1,748,752	-		IAI47_08265	0.76	-1.3
1,748,752	-		IAI47_08265	0.76	+0.9
1,748,752	-		IAI47_08265	0.76	-1.6
1,748,752	-		IAI47_08265	0.76	+0.3
1,748,752	-		IAI47_08265	0.76	+1.2
1,748,752	-		IAI47_08265	0.76	+2.0
1,748,850	+		IAI47_08265	0.82	-1.0
1,748,850	+		IAI47_08265	0.82	+0.3
1,748,850	+		IAI47_08265	0.82	-1.1
1,748,850	+		IAI47_08265	0.82	-0.3
1,748,851	-		IAI47_08265	0.83	+3.4
1,748,851	-		IAI47_08265	0.83	-1.5
1,748,851	-		IAI47_08265	0.83	+0.4
1,748,851	-		IAI47_08265	0.83	+0.3
1,748,851	-		IAI47_08265	0.83	+2.1
1,748,851	-		IAI47_08265	0.83	+0.1
1,748,851	-		IAI47_08265	0.83	-0.8
1,748,852	+		IAI47_08265	0.83	-1.4
1,748,852	+		IAI47_08265	0.83	-0.9
1,748,852	+		IAI47_08265	0.83	-1.8
1,748,852	+		IAI47_08265	0.83	+0.3
1,748,853	-		IAI47_08265	0.83	+0.9
1,748,853	-		IAI47_08265	0.83	-0.3
1,748,853	-		IAI47_08265	0.83	-1.0
1,748,853	-		IAI47_08265	0.83	-0.3
1,748,853	-		IAI47_08265	0.83	+0.3
1,748,853	-		IAI47_08265	0.83	-0.5
1,748,862	+		IAI47_08265	0.83	+0.0
1,748,868	-		IAI47_08265	0.84	+0.2
1,748,892	+		IAI47_08265	0.85	+0.1
1,748,892	+		IAI47_08265	0.85	+0.8
1,748,892	+		IAI47_08265	0.85	+0.5
1,748,893	-		IAI47_08265	0.85	-1.8
1,748,893	-		IAI47_08265	0.85	+1.3
1,748,926	-		IAI47_08265	0.87	+1.7
1,748,940	+		IAI47_08265	0.88	-2.0
1,748,940	+		IAI47_08265	0.88	-0.8
1,748,940	+		IAI47_08265	0.88	-1.4
1,748,940	+		IAI47_08265	0.88	+0.4
1,748,941	-		IAI47_08265	0.88	+0.5
1,748,941	-		IAI47_08265	0.88	-0.5
1,748,941	-		IAI47_08265	0.88	-3.0
1,748,949	+		IAI47_08265	0.89	-1.5
1,748,950	-		IAI47_08265	0.89	+0.1
1,748,950	-		IAI47_08265	0.89	+0.7
1,748,950	-		IAI47_08265	0.89	-0.6
1,748,952	+		IAI47_08265	0.89	-0.5
1,748,952	+		IAI47_08265	0.89	-0.3
1,748,952	+		IAI47_08265	0.89	+2.3
1,748,952	+		IAI47_08265	0.89	+0.9
1,748,952	+		IAI47_08265	0.89	+0.3
1,748,953	-		IAI47_08265	0.89	-0.2
1,748,953	-		IAI47_08265	0.89	+0.7
1,748,953	-		IAI47_08265	0.89	+0.7
1,748,953	-		IAI47_08265	0.89	+0.5
1,748,953	-		IAI47_08265	0.89	+1.2
1,748,983	+				+1.0
1,748,984	-				-0.3
1,749,001	-				-0.2
1,749,001	-				+0.2
1,749,041	+				-0.4
1,749,041	+				-1.0
1,749,041	+				-0.7
1,749,042	-				-1.9
1,749,042	-				+1.1
1,749,042	-				-1.0
1,749,044	+				-0.8
1,749,044	+				+0.2
1,749,051	+				-0.5
1,749,051	+				-1.0
1,749,051	+				-0.1
1,749,051	+				+0.1
1,749,052	-				+0.0
1,749,052	-				-1.6
1,749,052	-				-0.0
1,749,052	-				+0.5
1,749,052	-				+0.1
1,749,054	+				+1.1
1,749,054	+				-0.2
1,749,055	-				-0.3
1,749,096	+				+0.7
1,749,096	+				-1.6
1,749,096	+				+0.0
1,749,096	+				+0.6
1,749,096	+				-1.1
1,749,097	-				+0.6
1,749,097	-				+2.0
1,749,097	-				+0.3
1,749,110	-				+0.6
1,749,121	-				+0.3
1,749,153	+				+0.3
1,749,154	-				-1.8
1,749,157	-				-0.6
1,749,157	-				+0.9
1,749,184	+				-1.5
1,749,184	+				-0.5
1,749,184	+				-0.6
1,749,188	-				+1.1
1,749,193	+				+0.4
1,749,193	+				+0.5
1,749,193	+				-2.0
1,749,193	+				-0.4
1,749,194	-				-0.4
1,749,199	-				+1.2
1,749,207	+				-0.3
1,749,207	+				+0.6
1,749,242	+				+0.0
1,749,243	-				+1.3
1,749,243	-				+1.2
1,749,243	-				-1.3
1,749,243	-				-0.1
1,749,243	-				-0.1
1,749,319	-				-0.7
1,749,319	-				-0.6
1,749,319	-				+1.6
1,749,319	-				+0.9
1,749,329	-				-0.9
1,749,329	-				-0.4
1,749,358	-				+0.3
1,749,385	+				-1.0
1,749,385	+				+0.1
1,749,386	-				+0.3
1,749,391	+				+0.8
1,749,391	+				-0.1
1,749,392	-				-1.5
1,749,392	-				-1.8
1,749,413	-				+0.2
1,749,413	-				+0.9
1,749,419	+				+0.1
1,749,419	+				-1.0
1,749,420	-				+1.3
1,749,460	-				-1.7
1,749,496	+				+0.7
1,749,563	-				+0.3
1,749,585	+				-0.5
1,749,585	+				+1.2
1,749,586	-				+0.4
1,749,586	-				+0.8
1,749,606	+				-2.1
1,749,630	-				+1.5
1,749,630	-				-0.7
1,749,643	+				+0.6
1,749,643	+				-0.8
1,749,643	+				+1.1
1,749,644	-				+1.6
1,749,644	-				-1.3
1,749,705	-		IAI47_08270	0.15	-1.4
1,749,708	+		IAI47_08270	0.15	-0.3
1,749,708	+		IAI47_08270	0.15	-2.0
1,749,708	+		IAI47_08270	0.15	-0.0
1,749,708	+		IAI47_08270	0.15	-0.8
1,749,791	+		IAI47_08270	0.26	+1.3
1,749,791	+		IAI47_08270	0.26	-0.2
1,749,791	+		IAI47_08270	0.26	+0.4
1,749,791	+		IAI47_08270	0.26	-0.3
1,749,791	+		IAI47_08270	0.26	+0.3
1,749,792	-		IAI47_08270	0.26	+1.2
1,749,874	-		IAI47_08270	0.36	+0.1
1,749,998	-		IAI47_08270	0.52	+1.6
1,750,052	+		IAI47_08270	0.59	-0.8
1,750,052	+		IAI47_08270	0.59	-0.4
1,750,053	-		IAI47_08270	0.59	-0.5
1,750,053	-		IAI47_08270	0.59	+1.8
1,750,097	+		IAI47_08270	0.64	-2.3
1,750,123	-		IAI47_08270	0.68	+0.0
1,750,146	+		IAI47_08270	0.71	-0.5
1,750,146	+		IAI47_08270	0.71	+0.0
1,750,146	+		IAI47_08270	0.71	-0.4
1,750,147	-		IAI47_08270	0.71	-1.1
1,750,173	+		IAI47_08270	0.74	-1.1
1,750,173	+		IAI47_08270	0.74	+0.4
1,750,185	+		IAI47_08270	0.76	-1.6
1,750,290	-		IAI47_08270	0.89	-0.3
1,750,331	+				+0.3
1,750,331	+				-0.7
1,750,331	+				+0.3
1,750,331	+				-0.3
1,750,332	-				-0.6
1,750,334	+				-0.2
1,750,334	+				-1.2
1,750,334	+				+1.3
1,750,335	-				+0.3
1,750,335	-				+1.3
1,750,335	-				-0.4
1,750,337	+				-0.6
1,750,337	+				+0.2
1,750,337	+				-1.0
1,750,338	-				+0.5
1,750,338	-				-1.5
1,750,340	+				+0.3
1,750,340	+				-1.4
1,750,368	+				+0.9
1,750,369	-				-1.0
1,750,373	+				+1.0
1,750,373	+				-0.2
1,750,373	+				+0.8
1,750,373	+				-1.7
1,750,385	-				+0.7
1,750,385	-				+1.5
1,750,397	+				+0.9
1,750,451	-				-0.1
1,750,451	-				+1.9
1,750,534	+		IAI47_08275	0.11	+1.0
1,750,535	-		IAI47_08275	0.11	-0.5
1,750,565	+		IAI47_08275	0.13	+1.9
1,750,566	-		IAI47_08275	0.13	+0.7
1,750,572	+		IAI47_08275	0.14	-0.0
1,750,572	+		IAI47_08275	0.14	-2.2
1,750,573	-		IAI47_08275	0.14	+0.6
1,750,573	-		IAI47_08275	0.14	-1.7
1,750,573	-		IAI47_08275	0.14	+0.9
1,750,611	+		IAI47_08275	0.16	+1.8
1,750,612	-		IAI47_08275	0.17	-0.4
1,750,614	+		IAI47_08275	0.17	+0.1
1,750,614	+		IAI47_08275	0.17	-0.4
1,750,614	+		IAI47_08275	0.17	+0.9
1,750,614	+		IAI47_08275	0.17	-0.8
1,750,615	-		IAI47_08275	0.17	+1.0
1,750,615	-		IAI47_08275	0.17	+0.0
1,750,631	+		IAI47_08275	0.18	-1.7
1,750,631	+		IAI47_08275	0.18	-0.5
1,750,631	+		IAI47_08275	0.18	-0.1
1,750,631	+		IAI47_08275	0.18	-0.7
1,750,631	+		IAI47_08275	0.18	-1.4
1,750,632	-		IAI47_08275	0.18	-0.4
1,750,657	-		IAI47_08275	0.20	-1.9
1,750,701	+		IAI47_08275	0.23	-0.3
1,750,701	+		IAI47_08275	0.23	-1.3
1,750,701	+		IAI47_08275	0.23	-0.8
1,750,702	-		IAI47_08275	0.23	-0.3
1,750,761	-		IAI47_08275	0.27	+0.7
1,750,761	-		IAI47_08275	0.27	-1.0
1,750,779	+		IAI47_08275	0.28	+1.7
1,750,790	-		IAI47_08275	0.29	-0.1
1,750,850	+		IAI47_08275	0.33	-1.1
1,750,850	+		IAI47_08275	0.33	+0.9
1,750,850	+		IAI47_08275	0.33	+0.5
1,750,850	+		IAI47_08275	0.33	-1.4
1,750,878	-		IAI47_08275	0.35	-0.4
1,750,923	+		IAI47_08275	0.38	+0.9
1,750,923	+		IAI47_08275	0.38	-0.1
1,750,923	+		IAI47_08275	0.38	-0.8
1,750,923	+		IAI47_08275	0.38	-0.3
1,750,923	+		IAI47_08275	0.38	-1.1
1,750,924	-		IAI47_08275	0.38	-0.5
1,750,924	-		IAI47_08275	0.38	+0.3
1,750,924	-		IAI47_08275	0.38	-0.3
1,750,996	+		IAI47_08275	0.43	+0.6
1,750,996	+		IAI47_08275	0.43	-0.2
1,750,997	-		IAI47_08275	0.43	-0.8
1,750,997	-		IAI47_08275	0.43	+1.6
1,751,003	+		IAI47_08275	0.44	+0.6
1,751,004	-		IAI47_08275	0.44	+0.8
1,751,004	-		IAI47_08275	0.44	-0.6
1,751,042	+		IAI47_08275	0.46	+0.5
1,751,042	+		IAI47_08275	0.46	+1.2
1,751,042	+		IAI47_08275	0.46	+0.7
1,751,042	+		IAI47_08275	0.46	+0.2
1,751,056	-		IAI47_08275	0.47	+0.3
1,751,084	+		IAI47_08275	0.49	+0.1
1,751,084	+		IAI47_08275	0.49	+0.3
1,751,084	+		IAI47_08275	0.49	-0.0
1,751,084	+		IAI47_08275	0.49	+3.5
1,751,084	+		IAI47_08275	0.49	+1.2
1,751,085	-		IAI47_08275	0.49	+2.0
1,751,085	-		IAI47_08275	0.49	+0.3
1,751,214	+		IAI47_08275	0.58	+0.5
1,751,214	+		IAI47_08275	0.58	-1.6
1,751,214	+		IAI47_08275	0.58	+1.0
1,751,214	+		IAI47_08275	0.58	+1.0
1,751,214	+		IAI47_08275	0.58	+1.7
1,751,214	+		IAI47_08275	0.58	-1.1
1,751,215	-		IAI47_08275	0.59	+0.2
1,751,215	-		IAI47_08275	0.59	-0.8
1,751,304	+		IAI47_08275	0.65	-0.7
1,751,355	-		IAI47_08275	0.68	+0.3
1,751,358	+		IAI47_08275	0.68	+0.4
1,751,358	+		IAI47_08275	0.68	+1.2
1,751,358	+		IAI47_08275	0.68	+0.0
1,751,359	-		IAI47_08275	0.69	+1.2
1,751,359	-		IAI47_08275	0.69	+1.4
1,751,359	-		IAI47_08275	0.69	+1.5
1,751,359	-		IAI47_08275	0.69	-0.4