Strain Fitness in Pantoea sp. MT58 around IAI47_06890

Experiment: Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4 with 1 mM Glucose and 0 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,444,275	-		IAI47_06885	0.54	-1.2
1,444,352	+		IAI47_06885	0.60	-1.7
1,444,356	+		IAI47_06885	0.60	-0.2
1,444,356	+		IAI47_06885	0.60	+0.5
1,444,356	+		IAI47_06885	0.60	+1.0
1,444,356	+		IAI47_06885	0.60	-1.9
1,444,357	-		IAI47_06885	0.60	-1.4
1,444,357	-		IAI47_06885	0.60	+1.1
1,444,369	-		IAI47_06885	0.61	-1.8
1,444,371	+		IAI47_06885	0.61	-0.3
1,444,371	+		IAI47_06885	0.61	-1.1
1,444,371	+		IAI47_06885	0.61	-0.1
1,444,371	+		IAI47_06885	0.61	-0.7
1,444,372	-		IAI47_06885	0.61	-0.4
1,444,372	-		IAI47_06885	0.61	-0.4
1,444,374	+		IAI47_06885	0.61	+0.0
1,444,374	+		IAI47_06885	0.61	-0.1
1,444,374	+		IAI47_06885	0.61	-0.2
1,444,375	-		IAI47_06885	0.61	+2.1
1,444,398	+		IAI47_06885	0.63	-1.3
1,444,398	+		IAI47_06885	0.63	+1.2
1,444,399	-		IAI47_06885	0.63	+0.7
1,444,423	-		IAI47_06885	0.65	+1.1
1,444,443	+		IAI47_06885	0.66	-1.6
1,444,443	+		IAI47_06885	0.66	+0.2
1,444,443	+		IAI47_06885	0.66	+1.2
1,444,443	+		IAI47_06885	0.66	-0.9
1,444,444	-		IAI47_06885	0.67	+0.4
1,444,452	+		IAI47_06885	0.67	+1.5
1,444,453	-		IAI47_06885	0.67	+0.4
1,444,462	+		IAI47_06885	0.68	-1.0
1,444,559	+		IAI47_06885	0.75	-1.0
1,444,559	+		IAI47_06885	0.75	+0.0
1,444,560	-		IAI47_06885	0.75	-0.2
1,444,563	+		IAI47_06885	0.75	-0.3
1,444,563	+		IAI47_06885	0.75	-0.1
1,444,563	+		IAI47_06885	0.75	+0.1
1,444,563	+		IAI47_06885	0.75	-0.4
1,444,564	-		IAI47_06885	0.75	-0.9
1,444,564	-		IAI47_06885	0.75	-0.2
1,444,564	-		IAI47_06885	0.75	+2.1
1,444,564	-		IAI47_06885	0.75	-0.3
1,444,564	-		IAI47_06885	0.75	+1.5
1,444,564	-		IAI47_06885	0.75	+0.6
1,444,564	-		IAI47_06885	0.75	-0.9
1,444,564	-		IAI47_06885	0.75	-0.5
1,444,564	-		IAI47_06885	0.75	+0.3
1,444,572	-		IAI47_06885	0.76	-0.5
1,444,581	-		IAI47_06885	0.77	-1.2
1,444,640	+		IAI47_06885	0.81	+0.1
1,444,641	-		IAI47_06885	0.81	+0.1
1,444,641	-		IAI47_06885	0.81	+0.4
1,444,659	+		IAI47_06885	0.83	-0.3
1,444,659	+		IAI47_06885	0.83	-0.7
1,444,659	+		IAI47_06885	0.83	-0.6
1,444,659	+		IAI47_06885	0.83	-1.3
1,444,660	-		IAI47_06885	0.83	-2.3
1,444,722	+		IAI47_06885	0.87	-0.1
1,444,722	+		IAI47_06885	0.87	-0.3
1,444,722	+				+0.2
1,444,723	-		IAI47_06885	0.87	-1.6
1,444,723	-		IAI47_06885	0.87	+0.6
1,444,749	+		IAI47_06885	0.89	+1.2
1,444,749	+		IAI47_06885	0.89	+0.2
1,444,750	-		IAI47_06885	0.89	+0.1
1,444,750	-		IAI47_06885	0.89	+0.6
1,444,755	+		IAI47_06885	0.90	-1.8
1,444,755	+		IAI47_06885	0.90	+0.5
1,444,755	+		IAI47_06885	0.90	-0.4
1,444,755	+		IAI47_06885	0.90	+0.9
1,444,755	+		IAI47_06885	0.90	-0.8
1,444,755	+		IAI47_06885	0.90	-2.6
1,444,755	+		IAI47_06885	0.90	+1.4
1,444,755	+		IAI47_06885	0.90	-1.0
1,444,755	+		IAI47_06885	0.90	-0.4
1,444,755	+		IAI47_06885	0.90	-0.2
1,444,755	+		IAI47_06885	0.90	+0.2
1,444,756	-		IAI47_06885	0.90	+0.1
1,444,756	-		IAI47_06885	0.90	+0.3
1,444,756	-		IAI47_06885	0.90	-0.9
1,444,756	-		IAI47_06885	0.90	+0.6
1,444,756	-		IAI47_06885	0.90	-0.5
1,444,756	-		IAI47_06885	0.90	+1.9
1,444,756	-		IAI47_06885	0.90	-0.6
1,444,756	-		IAI47_06885	0.90	+0.3
1,444,764	+				+0.9
1,444,765	-				-0.4
1,444,767	+				-0.6
1,444,767	+				+0.1
1,444,767	+				-0.2
1,444,768	-				-0.4
1,444,768	-				-1.2
1,444,768	-				+1.0
1,444,815	+				-0.5
1,444,815	+				-1.8
1,444,815	+				+0.2
1,444,815	+				-1.0
1,444,815	+				-1.5
1,444,815	+				+0.8
1,444,815	+				+0.4
1,444,816	-				-0.0
1,444,816	-				+1.5
1,444,816	-				+2.2
1,444,816	-				-1.1
1,444,816	-				+0.7
1,444,816	-				-0.8
1,444,816	-				-0.8
1,444,816	-				+0.1
1,444,816	-				-0.8
1,444,816	-				+1.8
1,444,816	-				+0.3
1,444,838	-				+0.5
1,444,838	-				+2.1
1,444,880	+				+1.1
1,444,880	+				+0.5
1,444,881	-				-0.8
1,444,895	+				+0.3
1,444,895	+				-0.1
1,444,918	+				+0.2
1,444,919	-				-0.1
1,444,919	-				+0.2
1,444,919	-				+1.7
1,444,919	-				+0.0
1,444,943	-				+0.1
1,444,943	-				+0.0
1,444,988	-				-1.0
1,445,030	+				-1.5
1,445,031	-				+2.3
1,445,031	-				-0.8
1,445,055	+				+0.5
1,445,055	+				+0.4
1,445,055	+				+0.8
1,445,055	+				-0.7
1,445,056	-				-0.4
1,445,082	+				+0.2
1,445,083	-				-0.3
1,445,083	-				+2.4
1,445,168	-				+0.7
1,445,168	-				+0.5
1,445,168	-				-0.4
1,445,168	-				-1.1
1,445,168	-				+0.5
1,445,226	+				-1.0
1,445,226	+				+1.6
1,445,226	+				-0.3
1,445,226	+				+0.7
1,445,226	+				-0.5
1,445,226	+				-0.5
1,445,226	+				-0.4
1,445,226	+				+0.8
1,445,227	-				-1.3
1,445,227	-				-1.2
1,445,227	-				-1.1
1,445,227	-				+1.9
1,445,227	-				-0.5
1,445,227	-				+0.1
1,445,227	-				+0.2
1,445,247	+				-0.1
1,445,247	+				+0.5
1,445,247	+				+0.1
1,445,248	-				-1.6
1,445,248	-				+0.7
1,445,248	-				-2.1
1,445,248	-				-1.1
1,445,248	-				-2.1
1,445,248	-				+0.6
1,445,377	-				+0.9
1,445,407	+		IAI47_06890	0.10	+0.2
1,445,407	+		IAI47_06890	0.10	-0.6
1,445,408	-		IAI47_06890	0.11	-0.7
1,445,423	+		IAI47_06890	0.12	-1.1
1,445,423	+		IAI47_06890	0.12	+0.1
1,445,424	-		IAI47_06890	0.12	-0.6
1,445,523	+		IAI47_06890	0.19	+2.4
1,445,523	+		IAI47_06890	0.19	-2.1
1,445,524	-		IAI47_06890	0.19	+1.0
1,445,537	+		IAI47_06890	0.20	-2.5
1,445,538	-		IAI47_06890	0.20	+0.8
1,445,555	+		IAI47_06890	0.21	-1.2
1,445,556	-		IAI47_06890	0.22	+0.1
1,445,556	-		IAI47_06890	0.22	-0.1
1,445,568	-		IAI47_06890	0.22	-0.4
1,445,568	-		IAI47_06890	0.22	+0.1
1,445,614	+		IAI47_06890	0.26	+0.6
1,445,682	+		IAI47_06890	0.31	-1.8
1,445,682	+		IAI47_06890	0.31	+0.3
1,445,716	+		IAI47_06890	0.33	+0.6
1,445,716	+		IAI47_06890	0.33	-0.7
1,445,717	-		IAI47_06890	0.33	+0.6
1,445,717	-		IAI47_06890	0.33	-0.4
1,445,745	+		IAI47_06890	0.35	-0.3
1,445,745	+		IAI47_06890	0.35	+0.1
1,445,798	+		IAI47_06890	0.39	+0.3
1,445,799	-		IAI47_06890	0.39	-1.7
1,445,799	-		IAI47_06890	0.39	-0.4
1,445,801	+		IAI47_06890	0.40	-0.9
1,445,801	+		IAI47_06890	0.40	-0.6
1,445,802	-		IAI47_06890	0.40	-2.4
1,445,817	+		IAI47_06890	0.41	+0.1
1,445,818	-		IAI47_06890	0.41	-2.1
1,445,818	-		IAI47_06890	0.41	-0.7
1,445,834	+		IAI47_06890	0.42	-2.0
1,445,834	+		IAI47_06890	0.42	-0.4
1,445,835	-		IAI47_06890	0.42	-1.6
1,445,849	+		IAI47_06890	0.43	-0.5
1,445,850	-		IAI47_06890	0.43	-2.9
1,445,882	+		IAI47_06890	0.46	+0.1
1,445,915	+		IAI47_06890	0.48	-0.9
1,445,915	+		IAI47_06890	0.48	+0.2
1,445,915	+		IAI47_06890	0.48	-0.3
1,445,916	-		IAI47_06890	0.48	-1.3
1,445,916	-		IAI47_06890	0.48	+0.7
1,445,916	-		IAI47_06890	0.48	-0.4
1,445,973	-		IAI47_06890	0.52	-1.1
1,446,113	+		IAI47_06890	0.63	+0.8
1,446,114	-		IAI47_06890	0.63	-0.2
1,446,299	+		IAI47_06890	0.76	+1.0
1,446,299	+		IAI47_06890	0.76	+0.6
1,446,328	+		IAI47_06890	0.79	+0.6
1,446,329	+		IAI47_06890	0.79	+0.5
1,446,329	+		IAI47_06890	0.79	+1.9
1,446,329	+		IAI47_06890	0.79	-1.1
1,446,329	+		IAI47_06890	0.79	-0.3
1,446,329	+		IAI47_06890	0.79	+0.3
1,446,329	+		IAI47_06890	0.79	+0.2
1,446,329	+		IAI47_06890	0.79	-0.9
1,446,330	-		IAI47_06890	0.79	+0.2
1,446,330	-		IAI47_06890	0.79	+0.3
1,446,330	-		IAI47_06890	0.79	-1.3
1,446,330	-		IAI47_06890	0.79	-0.9
1,446,330	-		IAI47_06890	0.79	+0.4
1,446,330	-		IAI47_06890	0.79	-0.5
1,446,330	-		IAI47_06890	0.79	+0.4
1,446,330	-		IAI47_06890	0.79	-1.7
1,446,330	-		IAI47_06890	0.79	+0.2
1,446,330	-		IAI47_06890	0.79	+0.1
1,446,330	-		IAI47_06890	0.79	-0.3
1,446,331	+		IAI47_06890	0.79	-0.2
1,446,331	+		IAI47_06890	0.79	+1.2
1,446,331	+		IAI47_06890	0.79	+0.4
1,446,331	+		IAI47_06890	0.79	+0.8
1,446,331	+		IAI47_06890	0.79	-1.1
1,446,331	+		IAI47_06890	0.79	-0.3
1,446,331	+		IAI47_06890	0.79	+0.2
1,446,331	+		IAI47_06890	0.79	+1.5
1,446,331	+		IAI47_06890	0.79	-0.6
1,446,331	+		IAI47_06890	0.79	-1.3
1,446,331	+		IAI47_06890	0.79	+1.8
1,446,332	-		IAI47_06890	0.79	-1.0
1,446,332	-		IAI47_06890	0.79	+1.8
1,446,332	-		IAI47_06890	0.79	+0.0
1,446,332	-		IAI47_06890	0.79	-1.3
1,446,332	-		IAI47_06890	0.79	-1.1
1,446,332	-		IAI47_06890	0.79	-0.5
1,446,332	-		IAI47_06890	0.79	-0.2
1,446,332	-		IAI47_06890	0.79	-0.8
1,446,332	-		IAI47_06890	0.79	-0.8
1,446,332	-		IAI47_06890	0.79	-1.3
1,446,332	-		IAI47_06890	0.79	+2.5
1,446,348	-		IAI47_06890	0.80	+0.1
1,446,383	+		IAI47_06890	0.83	-0.6
1,446,383	+		IAI47_06890	0.83	-1.3
1,446,383	+		IAI47_06890	0.83	-0.5
1,446,384	-		IAI47_06890	0.83	+0.1
1,446,384	-		IAI47_06890	0.83	+0.5
1,446,399	-		IAI47_06890	0.84	-1.8
1,446,399	-		IAI47_06890	0.84	-0.4
1,446,399	-		IAI47_06890	0.84	-0.1
1,446,400	+		IAI47_06890	0.84	-0.9
1,446,401	-		IAI47_06890	0.84	+0.3
1,446,401	-		IAI47_06890	0.84	+0.0
1,446,401	-		IAI47_06890	0.84	+0.9
1,446,543	+				-0.1
1,446,588	-				+0.3
1,446,588	-				+0.0
1,446,588	-				+0.8
1,446,588	-				+0.4
1,446,588	-				+0.1
1,446,588	-				-0.3
1,446,609	+				+2.4
1,446,610	-				-0.7
1,446,610	-				+1.1
1,446,610	-				+1.1
1,446,610	-				+0.4
1,446,695	-				+0.0
1,446,843	-				+0.2
1,446,843	-				+0.7
1,446,866	+				+0.5
1,446,866	+				+0.8
1,446,896	+				+1.0
1,446,897	-				+1.4
1,446,897	-				+1.9
1,446,897	-				-2.1
1,446,897	-				-1.2
1,446,897	-				+0.6
1,446,908	+				+1.9
1,446,909	-				+0.7
1,446,931	-				+1.2
1,446,937	+				+0.3
1,446,938	-				+0.7
1,446,938	-				-1.4
1,446,966	-				+1.5
1,446,999	+				+3.3
1,446,999	+				+0.5
1,446,999	+				-1.6
1,446,999	+				-1.7
1,446,999	+				-1.0
1,447,000	-				+1.7
1,447,000	-				-0.5
1,447,000	-				-2.1
1,447,000	-				-1.1
1,447,000	-				+0.1
1,447,000	-				+0.7
1,447,042	+		IAI47_06895	0.10	+2.4
1,447,043	-		IAI47_06895	0.10	+0.1
1,447,043	-		IAI47_06895	0.10	-2.1
1,447,247	+		IAI47_06895	0.17	+0.3
1,447,247	+		IAI47_06895	0.17	-0.9
1,447,248	-		IAI47_06895	0.17	-0.8
1,447,248	-		IAI47_06895	0.17	+0.0
1,447,248	-		IAI47_06895	0.17	+1.0
1,447,248	-		IAI47_06895	0.17	+1.5
1,447,248	-		IAI47_06895	0.17	-0.3
1,447,317	+		IAI47_06895	0.19	+0.2
1,447,317	+		IAI47_06895	0.19	+2.4
1,447,333	-		IAI47_06895	0.19	-1.5
1,447,341	+		IAI47_06895	0.19	-0.9
1,447,341	+		IAI47_06895	0.19	-0.6
1,447,341	+		IAI47_06895	0.19	+0.0
1,447,341	+		IAI47_06895	0.19	+0.3
1,447,341	+		IAI47_06895	0.19	-1.0
1,447,341	+		IAI47_06895	0.19	-1.7
1,447,341	+		IAI47_06895	0.19	-0.5
1,447,342	-		IAI47_06895	0.19	-0.1
1,447,342	-		IAI47_06895	0.19	+0.5
1,447,342	-		IAI47_06895	0.19	-0.9
1,447,342	-		IAI47_06895	0.19	+1.4
1,447,358	+		IAI47_06895	0.20	-1.4
1,447,358	+		IAI47_06895	0.20	-0.6
1,447,359	-		IAI47_06895	0.20	+0.0
1,447,359	-		IAI47_06895	0.20	+0.6
1,447,359	-		IAI47_06895	0.20	-0.1
1,447,359	-		IAI47_06895	0.20	+0.3
1,447,379	+		IAI47_06895	0.21	+0.2
1,447,379	+		IAI47_06895	0.21	+1.7
1,447,379	+		IAI47_06895	0.21	+1.0
1,447,380	-		IAI47_06895	0.21	-0.3
1,447,380	-		IAI47_06895	0.21	-1.1
1,447,467	+		IAI47_06895	0.23	-0.6
1,447,468	-		IAI47_06895	0.23	-0.1
1,447,468	-		IAI47_06895	0.23	-0.5
1,447,472	+		IAI47_06895	0.23	-0.2
1,447,472	+		IAI47_06895	0.23	+0.1
1,447,472	+		IAI47_06895	0.23	+1.0
1,447,472	+		IAI47_06895	0.23	+0.5
1,447,472	+		IAI47_06895	0.23	+0.8
1,447,472	+		IAI47_06895	0.23	-1.1
1,447,473	-		IAI47_06895	0.23	+0.9
1,447,473	-		IAI47_06895	0.23	+2.5
1,447,473	-		IAI47_06895	0.23	+0.3
1,447,473	-		IAI47_06895	0.23	-0.6
1,447,473	-		IAI47_06895	0.23	+0.9
1,447,473	-		IAI47_06895	0.23	+0.7
1,447,473	-		IAI47_06895	0.23	-0.9
1,447,473	-		IAI47_06895	0.23	+0.4
1,447,483	+		IAI47_06895	0.24	+1.0
1,447,483	+		IAI47_06895	0.24	+1.0
1,447,483	+		IAI47_06895	0.24	+0.2
1,447,484	-		IAI47_06895	0.24	-0.1
1,447,484	-		IAI47_06895	0.24	+0.2
1,447,523	-		IAI47_06895	0.25	-0.8
1,447,612	+		IAI47_06895	0.27	-0.2
1,447,612	+		IAI47_06895	0.27	-0.1
1,447,612	+		IAI47_06895	0.27	-1.4
1,447,612	+		IAI47_06895	0.27	-0.3
1,447,612	+		IAI47_06895	0.27	+1.5
1,447,613	-		IAI47_06895	0.28	+0.1
1,447,613	-		IAI47_06895	0.28	+1.5